mRNA_M-pyrifera_M_contig111764.2457.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111764.2457.1
Unique NamemRNA_M-pyrifera_M_contig111764.2457.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Match: D8TP34_VOLCA (Uncharacterized protein n=4 Tax=Volvocaceae TaxID=3065 RepID=D8TP34_VOLCA)

HSP 1 Score: 176 bits (446), Expect = 2.530e-48
Identity = 76/146 (52.05%), Postives = 113/146 (77.40%), Query Frame = 1
Query:    1 LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETKTPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKMKKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGYGNWDALK 438
            LT+EE+  +E+L   GF +W+K+DF+ F++ CE YGR +   IAAE + KT EEV  Y+ VFW+RY E+  WEK++ +IERGE K+Q++  ++NA++AK+++YK+PW++LK+ Y  NKGK +T EEDRF++CM H++GYGNWD LK
Sbjct:  826 LTEEEQAEREQLLEDGFKDWTKRDFNAFVRACEKYGRENIPQIAAEVDGKTDEEVHAYAKVFWKRYRELSDWEKVIKNIERGEQKIQRQQDIMNAVAAKLERYKNPWQELKIQYGANKGKAYTEEEDRFILCMVHKLGYGNWDDLK 971          
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Match: I0Z4M3_COCSC (Uncharacterized protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z4M3_COCSC)

HSP 1 Score: 174 bits (440), Expect = 1.580e-47
Identity = 75/146 (51.37%), Postives = 114/146 (78.08%), Query Frame = 1
Query:    1 LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETKTPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKMKKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGYGNWDALK 438
            L +EE + KE+L ++GFSNW+++DF+ F++ CE YGRNS A I  E + KT EEV+ YS  FW+RY+E+  WE+++ +IERGE ++Q++  ++ A++AKM++YK+PW++LK+ Y  NKGK +T EEDRF++CM H++GYG WD LK
Sbjct:  766 LGEEEIEEKEQLLSEGFSNWNRRDFNAFVRACEKYGRNSLAEITREVDGKTEEEVSTYSKTFWKRYKELSDWERVIKNIERGEQRIQRQQDIMTAIAAKMERYKNPWQELKLQYGANKGKAYTEEEDRFILCMVHKLGYGAWDELK 911          
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Match: A0A1Y1HX93_KLENI (Chromatin remodeling complex WSTF-ISWI small subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HX93_KLENI)

HSP 1 Score: 174 bits (440), Expect = 1.640e-47
Identity = 76/146 (52.05%), Postives = 111/146 (76.03%), Query Frame = 1
Query:    1 LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETKTPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKMKKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGYGNWDALK 438
            LT EEE  KE+L  +GF NWS++DF+ F++  E YGR+  A IA E E KTP+EV +Y+AVFW+RY+E++ WEK + +IERGE ++ ++D M+ A+  K+ +Y++PW +LK+ Y  NKGK +T E+DRFL+CM +++GYGNWD LK
Sbjct:  856 LTPEEEAEKEQLLQEGFDNWSRRDFNAFIRANEKYGRHDLASIATEIEGKTPDEVQDYAAVFWDRYQELNDWEKFIKNIERGEQRIARKDEMMQAIERKLARYRNPWYELKIQYGQNKGKLYTEEDDRFLLCMVNKLGYGNWDELK 1001          
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Match: Q4JLR9_CHLRE (Chromatin-remodelling complex ATPase ISWI2 n=4 Tax=Chlamydomonas TaxID=3052 RepID=Q4JLR9_CHLRE)

HSP 1 Score: 173 bits (439), Expect = 2.220e-47
Identity = 75/146 (51.37%), Postives = 114/146 (78.08%), Query Frame = 1
Query:    1 LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETKTPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKMKKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGYGNWDALK 438
            LT+EE + +E+L  +GF  W+K+DF+ F++ CE YGR +   IAAE + KT +EV EY+ VFW+RY E+  +EK++ +IERGE K+Q++  ++NA++AK+++YK+PW++LK+ Y  NKGK +T EEDRF++CM H++GYGNWD LK
Sbjct:  830 LTEEELEEREKLLEEGFKEWTKRDFNAFVRACEKYGRENIPQIAAEVDGKTEDEVREYAKVFWQRYRELADYEKVIKNIERGEQKIQRQQDIMNAIAAKLERYKNPWQELKIQYGANKGKAYTEEEDRFILCMVHKLGYGNWDDLK 975          
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Match: A0A2V0PM92_9CHLO (Chromatin-remodeling complex ATPase chain (Fragment) n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PM92_9CHLO)

HSP 1 Score: 163 bits (412), Expect = 3.120e-47
Identity = 73/146 (50.00%), Postives = 108/146 (73.97%), Query Frame = 1
Query:    1 LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETKTPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKMKKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGYGNWDALK 438
            LT+EE   KE L T+GFS+W+++DF  F++ CE YGR+    IA E +TK+ +EV  Y+A FW RY+E++ WEK++ +IERGE K+Q++  ++ AL AK+++Y++PW+ LKV Y   KGK +  EEDRF++C TH++GYG WD LK
Sbjct:   22 LTEEEVAEKERLLTEGFSSWNRRDFGAFVRACEKYGRDRLDQIAGELDTKSLDEVKAYAAAFWARYQELNDWEKVIKNIERGEQKIQRQADIMAALRAKIERYRNPWQDLKVAYGQAKGKAYNEEEDRFILCKTHELGYGAWDELK 167          
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Match: A0A7J8P7W4_GOSRA (SANT domain-containing protein (Fragment) n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8P7W4_GOSRA)

HSP 1 Score: 159 bits (403), Expect = 2.780e-46
Identity = 72/146 (49.32%), Postives = 107/146 (73.29%), Query Frame = 1
Query:    1 LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETKTPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKMKKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGYGNWDALK 438
            LT EE + KE L  +GFS+WS++DF+ F++ CE YGRN    IA+E E KT EEV  Y+ VF ERY+E++ +++++ +IERGE ++ +RD ++ A+  K+ +YK+PW +LK+ Y  NKGK +  E DRF+ICM H++GYGNW+ LK
Sbjct:   15 LTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIMSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRRDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWEELK 160          
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Match: A0A1I9Q1V6_9INSE (SANT domain-containing protein (Fragment) n=10 Tax=Cloeon TaxID=197151 RepID=A0A1I9Q1V6_9INSE)

HSP 1 Score: 158 bits (400), Expect = 5.630e-46
Identity = 77/139 (55.40%), Postives = 103/139 (74.10%), Query Frame = 1
Query:    1 LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETKTPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKMKKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGY 417
            LTDEE+  KE L T GF+NWSK+DF+ F+K  E YGR+    IA E E KTPEEV EYSAVFW+R  E+   ++++T IERGE K+Q+R ++  AL AKM +Y+ P+ QL++ Y TNKGK +T EEDRFL+CM H++G+
Sbjct:   26 LTDEEQTEKERLLTTGFTNWSKRDFNQFIKANEKYGRDDIDNIAREVEGKTPEEVMEYSAVFWDRCSELQDIDRIMTQIERGETKIQRRASIKKALDAKMARYRAPFHQLRIAYGTNKGKNYTEEEDRFLVCMLHKLGF 164          
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Match: A0A250X559_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X559_9CHLO)

HSP 1 Score: 168 bits (425), Expect = 1.710e-45
Identity = 74/146 (50.68%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETKTPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKMKKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGYGNWDALK 438
            L+ EE++ +  L  QGF  W+++DF++F++ CE +GRN+   IA E E K+ EEV +YS VFW+R++E+  WEK+  +IERGE K+QK     NA+++K+ KYK+PW++LK+VY  NKGK +T +EDRF++CMTH++GYG WD LK
Sbjct:  807 LSQEEDEERMRLLEQGFGGWTRRDFNMFVRACEKFGRNALTQIAGEIEGKSEEEVRQYSKVFWQRHKELSDWEKVTKNIERGEQKIQKFHDNQNAIASKLAKYKNPWQELKLVYGPNKGKAYTEDEDRFILCMTHKLGYGQWDELK 952          
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Match: A0A835YLR3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YLR3_9CHLO)

HSP 1 Score: 167 bits (423), Expect = 3.190e-45
Identity = 72/146 (49.32%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETKTPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKMKKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGYGNWDALK 438
            L++EE   +E L  +GF  W+K+DF+ F++ CE YGR +   IAAE + KT +EV  Y+ VFW+R+ E+  WEK++ +IERGE K+Q++  ++NA++ K+++YK+PW++LK+ Y  NKGK +T EEDRF++CM H++GYGNWD LK
Sbjct:  828 LSEEELAEREALLEEGFKEWTKRDFNAFVRACEKYGRENVPQIAAEVDGKTEDEVRAYAKVFWKRHRELADWEKVIKNIERGEQKIQRQQDIMNAIAGKLERYKNPWQELKIQYGANKGKAYTEEEDRFILCMVHKLGYGNWDDLK 973          
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Match: UPI00053CA22F (ISWI chromatin-remodeling complex ATPase CHR11-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA22F)

HSP 1 Score: 158 bits (399), Expect = 3.570e-45
Identity = 72/146 (49.32%), Postives = 104/146 (71.23%), Query Frame = 1
Query:    1 LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETKTPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKMKKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGYGNWDALK 438
            LT EE + KE L  +GFS WS++DF+ FL+ CE YGRN    IA E E KT EEV  Y+  F ERY+E++ +++++ +IERGE ++ ++D ++ A+  K+ +YK+PW +LKV Y  NKGK +  + DRF+ICM H++GYGNWD LK
Sbjct:   52 LTAEEVEEKERLLEEGFSTWSRRDFNTFLRACEKYGRNDIKSIATEMEGKTEEEVERYAKAFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEDCDRFMICMVHKLGYGNWDELK 197          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111764.2457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8TP34_VOLCA2.530e-4852.05Uncharacterized protein n=4 Tax=Volvocaceae TaxID=... [more]
I0Z4M3_COCSC1.580e-4751.37Uncharacterized protein n=2 Tax=Coccomyxa TaxID=41... [more]
A0A1Y1HX93_KLENI1.640e-4752.05Chromatin remodeling complex WSTF-ISWI small subun... [more]
Q4JLR9_CHLRE2.220e-4751.37Chromatin-remodelling complex ATPase ISWI2 n=4 Tax... [more]
A0A2V0PM92_9CHLO3.120e-4750.00Chromatin-remodeling complex ATPase chain (Fragmen... [more]
A0A7J8P7W4_GOSRA2.780e-4649.32SANT domain-containing protein (Fragment) n=2 Tax=... [more]
A0A1I9Q1V6_9INSE5.630e-4655.40SANT domain-containing protein (Fragment) n=10 Tax... [more]
A0A250X559_9CHLO1.710e-4550.68Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A835YLR3_9CHLO3.190e-4549.32Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
UPI00053CA22F3.570e-4549.32ISWI chromatin-remodeling complex ATPase CHR11-lik... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111764contigM-pyrifera_M_contig111764:8..448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score176.8
Seed ortholog evalue7.5e-42
Seed eggNOG ortholog3067.XP_002948283.1
KEGG koko:K11654
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chromatin-remodeling complex ATPase
EggNOG OGs34GQ8@3041,37QUZ@33090,COG0553@1,KOG0385@2759
COG Functional cat.K
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.9761772-CDS-M-pyrifera_M_contig111764:7..4481622815630.9761772-CDS-M-pyrifera_M_contig111764:7..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111764 8..448 -
1692277496.0548198-CDS-M-pyrifera_M_contig111764:7..4481692277496.0548198-CDS-M-pyrifera_M_contig111764:7..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111764 8..448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111764.2457.1prot_M-pyrifera_M_contig111764.2457.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111764 8..448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111764.2457.1

>prot_M-pyrifera_M_contig111764.2457.1 ID=prot_M-pyrifera_M_contig111764.2457.1|Name=mRNA_M-pyrifera_M_contig111764.2457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
LTDEEEQRKEELSTQGFSNWSKKDFSIFLKCCEVYGRNSHALIAAETETK
TPEEVAEYSAVFWERYEEVDGWEKMLTHIERGEVKLQKRDAMINALSAKM
KKYKDPWKQLKVVYNTNKGKQFTAEEDRFLICMTHQVGYGNWDALK*
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mRNA from alignment at M-pyrifera_M_contig111764:8..448-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111764.2457.1 ID=mRNA_M-pyrifera_M_contig111764.2457.1|Name=mRNA_M-pyrifera_M_contig111764.2457.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig111764:8..448- (Macrocystis pyrifera P11B4 male)
CTCACCGATGAGGAGGAGCAGCGCAAGGAAGAGCTCTCGACGCAGGGCTT CAGCAACTGGTCGAAGAAGGACTTCTCGATCTTCCTGAAGTGCTGCGAAG TGTACGGCCGCAACTCCCACGCCCTCATCGCTGCCGAGACGGAGACCAAG ACGCCAGAGGAGGTGGCGGAGTACTCGGCAGTCTTCTGGGAGCGCTACGA AGAGGTAGATGGCTGGGAGAAGATGCTCACCCACATCGAGCGTGGTGAGG TCAAGCTCCAGAAGCGTGACGCCATGATCAATGCGCTGAGCGCCAAGATG AAGAAGTACAAGGACCCCTGGAAGCAGCTGAAGGTGGTGTACAACACCAA CAAGGGCAAGCAGTTCACTGCGGAGGAGGACCGCTTCCTCATCTGCATGA CGCACCAGGTGGGCTACGGCAACTGGGACGCTCTCAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111764:8..448-

>mRNA_M-pyrifera_M_contig111764.2457.1 ID=mRNA_M-pyrifera_M_contig111764.2457.1|Name=mRNA_M-pyrifera_M_contig111764.2457.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig111764:8..448- (Macrocystis pyrifera P11B4 male)
CTCACCGATGAGGAGGAGCAGCGCAAGGAAGAGCTCTCGACGCAGGGCTT
CAGCAACTGGTCGAAGAAGGACTTCTCGATCTTCCTGAAGTGCTGCGAAG
TGTACGGCCGCAACTCCCACGCCCTCATCGCTGCCGAGACGGAGACCAAG
ACGCCAGAGGAGGTGGCGGAGTACTCGGCAGTCTTCTGGGAGCGCTACGA
AGAGGTAGATGGCTGGGAGAAGATGCTCACCCACATCGAGCGTGGTGAGG
TCAAGCTCCAGAAGCGTGACGCCATGATCAATGCGCTGAGCGCCAAGATG
AAGAAGTACAAGGACCCCTGGAAGCAGCTGAAGGTGGTGTACAACACCAA
CAAGGGCAAGCAGTTCACTGCGGAGGAGGACCGCTTCCTCATCTGCATGA
CGCACCAGGTGGGCTACGGCAACTGGGACGCTCTCAAGTAGCTCACCGAT
GAGGAGGAGCAGCGCAAGGAAGAGCTCTCGACGCAGGGCTTCAGCAACTG
GTCGAAGAAGGACTTCTCGATCTTCCTGAAGTGCTGCGAAGTGTACGGCC
GCAACTCCCACGCCCTCATCGCTGCCGAGACGGAGACCAAGACGCCAGAG
GAGGTGGCGGAGTACTCGGCAGTCTTCTGGGAGCGCTACGAAGAGGTAGA
TGGCTGGGAGAAGATGCTCACCCACATCGAGCGTGGTGAGGTCAAGCTCC
AGAAGCGTGACGCCATGATCAATGCGCTGAGCGCCAAGATGAAGAAGTAC
AAGGACCCCTGGAAGCAGCTGAAGGTGGTGTACAACACCAACAAGGGCAA
GCAGTTCACTGCGGAGGAGGACCGCTTCCTCATCTGCATGACGCACCAGG
TGGGCTACGGCAACTGGGACGCTCTCAAGTAG
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