mRNA_M-pyrifera_M_contig111754.2453.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111754.2453.1
Unique NamemRNA_M-pyrifera_M_contig111754.2453.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111754.2453.1 vs. uniprot
Match: D8LG49_ECTSI (Succinate dehydrogenase assembly factor 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG49_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 4.070e-6
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 GQVGLSLSEDDVAHLNDEQRAQLFRLKQQTSATP 102
            GQVG SLS  DV+HLNDEQR QL RLKQQ S++P
Sbjct:   72 GQVGRSLSAADVSHLNDEQRKQLVRLKQQASSSP 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111754.2453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG49_ECTSI4.070e-673.53Succinate dehydrogenase assembly factor 3 n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111754contigM-pyrifera_M_contig111754:297..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionACN9
Ec32 orthologEc-11_001950.1
Exons1
Model size293
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.7355363-CDS-M-pyrifera_M_contig111754:296..4161622815630.7355363-CDS-M-pyrifera_M_contig111754:296..416Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111754 297..416 +
1692277495.9139009-CDS-M-pyrifera_M_contig111754:296..4161692277495.9139009-CDS-M-pyrifera_M_contig111754:296..416Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111754 297..416 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.7496974-UTR-M-pyrifera_M_contig111754:416..5891622815630.7496974-UTR-M-pyrifera_M_contig111754:416..589Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111754 417..589 +
1692277495.9255714-UTR-M-pyrifera_M_contig111754:416..5891692277495.9255714-UTR-M-pyrifera_M_contig111754:416..589Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111754 417..589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111754.2453.1prot_M-pyrifera_M_contig111754.2453.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111754 297..416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111754.2453.1

>prot_M-pyrifera_M_contig111754.2453.1 ID=prot_M-pyrifera_M_contig111754.2453.1|Name=mRNA_M-pyrifera_M_contig111754.2453.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
GQVGLSLSEDDVAHLNDEQRAQLFRLKQQTSATPEGGNV*
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mRNA from alignment at M-pyrifera_M_contig111754:297..589+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111754.2453.1 ID=mRNA_M-pyrifera_M_contig111754.2453.1|Name=mRNA_M-pyrifera_M_contig111754.2453.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=293bp|location=Sequence derived from alignment at M-pyrifera_M_contig111754:297..589+ (Macrocystis pyrifera P11B4 male)
GGGCAGGTCGGCCTTTCCTTGAGCGAAGACGATGTAGCCCACCTGAACGA
CGAGCAGCGGGCGCAGCTGTTCCGATTGAAGCAGCAGACATCGGCAACCC
CGGAGGGGGGAAACGTCTAGTAGCATTAGGAAACCCGTCCCAAGCAGACA
TGTTGAAAAGGGAGCACACTGCAAACCCAAACAGCATGTAGTAACACCTG
AACGACGAGCAGCGGGCACAGCTACTTCAAGTGAGACAGCAGGCGTGCGC
ACCCCCCGCCGGGAAACGCAACCTGGAGCGTCCCTCCTCCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111754:297..589+

>mRNA_M-pyrifera_M_contig111754.2453.1 ID=mRNA_M-pyrifera_M_contig111754.2453.1|Name=mRNA_M-pyrifera_M_contig111754.2453.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig111754:297..589+ (Macrocystis pyrifera P11B4 male)
GGGCAGGTCGGCCTTTCCTTGAGCGAAGACGATGTAGCCCACCTGAACGA
CGAGCAGCGGGCGCAGCTGTTCCGATTGAAGCAGCAGACATCGGCAACCC
CGGAGGGGGGAAACGTCTAGGGGCAGGTCGGCCTTTCCTTGAGCGAAGAC
GATGTAGCCCACCTGAACGACGAGCAGCGGGCGCAGCTGTTCCGATTGAA
GCAGCAGACATCGGCAACCCCGGAGGGGGGAAACGTCTAG
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