mRNA_M-pyrifera_M_contig111730.2451.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A6H5KX57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX57_9PHAE) HSP 1 Score: 126 bits (317), Expect = 6.600e-32 Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1
Query: 7 LRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLS-FDVLVATPDAF 276
LR YQ RIA C NTIVVLPTGSGKTL+AAE I+R+GPPALFLVPT L+VDQQAEAL SWTGL+V KY GG +P S F +LV+TP AF
Sbjct: 24 LRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEAIKRLGPPALFLVPTRLMVDQQAEALGSWTGLSVTKYMGGAGLPPSTFKILVSTPQAF 114
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A1Q9EU77_SYMMI (Endoribonuclease Dicer-like 2a n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EU77_SYMMI) HSP 1 Score: 122 bits (307), Expect = 1.180e-30 Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 1 MRLRDYQLRIARGC-GEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
M LR YQ R+ NT+VVLPTG+GKTLIA+E+I+R+GPP LFLVPTCLLV+QQA+A+ WTGL VA++ GG+S+P FDVLV+TP AF
Sbjct: 1 MELRAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLPAHFDVLVSTPKAF 93
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A812TEW1_9DINO (DCL2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TEW1_9DINO) HSP 1 Score: 122 bits (307), Expect = 1.550e-30 Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 1 MRLRDYQLRIARGC-GEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
M LR YQ R+ NT+VVLPTG+GKTLIA+E+I+R+GPP LFLVPTCLLV+QQA+A+ WTGL VA++ GG+S+P FDVLV+TP AF
Sbjct: 1 MELRAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLPAHFDVLVSTPKAF 93
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A812RBN0_9DINO (DCL2A protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RBN0_9DINO) HSP 1 Score: 120 bits (301), Expect = 8.180e-30 Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 1
Query: 1 MRLRDYQLRIARGC-GEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
M+LR YQ RI NTIVVLPTG+GKTLIA+E+++R+GP LFLVPTCLLV+QQA+A+ WTGL VA++ GG SMP FDVLV+TP AF
Sbjct: 17 MQLRGYQQRIVDDALTTGNTIVVLPTGAGKTLIASELMKRLGPGCLFLVPTCLLVEQQAKAIREWTGLRVAEFMGGASMPQQFDVLVSTPKAF 109
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A7S4V2U7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V2U7_9DINO) HSP 1 Score: 112 bits (280), Expect = 6.010e-27 Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query: 1 MRLRDYQLRIARGCGEA--NTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
M LR YQ RI G EA NT+VVLPTG+GKTLIAAE+I+R+G LFLVPTCLLV+QQA+A+ WT L+V +Y GG ++P F VLV+TP AF
Sbjct: 1 MELRPYQSRIV-GQAEASGNTVVVLPTGAGKTLIAAELIKRVGGTCLFLVPTCLLVEQQAKAVGKWTKLSVGEYMGGATLPSRFQVLVSTPKAF 93
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A6H5L3L3_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L3_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.230e-25 Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 1
Query: 7 LRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWT-GLNVAKYKGGVSMPL-SFDVLVATPDAF 276
LR YQ RIAR C NT+VVLPTGSGKT+IAAEVI++ P ALFLVPT LV QQA+ L +WT +A+ +GG + SFDVLVATPDAF
Sbjct: 48 LRPYQSRIARACERDNTLVVLPTGSGKTIIAAEVIKQRPPRALFLVPTRHLVKQQAKVLRAWTFRRRIAQLRGGDELQKKSFDVLVATPDAF 139
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A812IWI1_SYMPI (CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IWI1_SYMPI) HSP 1 Score: 103 bits (256), Expect = 1.220e-23 Identity = 55/88 (62.50%), Postives = 65/88 (73.86%), Query Frame = 1
Query: 16 YQLRIARGCGEA-NTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
YQ RI A N IVVLPTG+GKTLIA+E+I +GPP L VPTC+LV+QQA A WTGL VA++ GGVS+P FDVLV+TP AF
Sbjct: 1998 YQERIVTEVRAAGNAIVVLPTGAGKTLIASELITGLGPPCL--VPTCMLVEQQARAAREWTGLQVAEFMGGVSVPQRFDVLVSTPKAF 2083
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A2V3IZ19_9FLOR (Endoribonuclease Dicer-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ19_9FLOR) HSP 1 Score: 99.4 bits (246), Expect = 2.300e-22 Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 1
Query: 1 MRLRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
+R R YQ RI NT+VVLPTG+GKTLIA EVI+ + PPALF+VPT LLV QQ+EA+ + T VA+ GG S+P S+ V+VATP F
Sbjct: 12 LRPRPYQQRIIDQAVLKNTLVVLPTGAGKTLIATEVIRTLSPPALFIVPTVLLVKQQSEAIAAHTNYKVAQLHGGKSLPHSWHVVVATPACF 103
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A836C8Q2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q2_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.350e-16 Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 7 LRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVI-----QRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
LR YQ RI + N +VVLPTG+GKTL+AAE I ++ ALFLVPT LV QQA+ + TGL+VA+ KGG ++ + VLVATP A+
Sbjct: 28 LRGYQERICMDMAKGNHLVVLPTGAGKTLVAAECIAAELWKQPTKRALFLVPTRNLVHQQAQVIEGETGLDVAELKGGNALRIGCRVLVATPGAY 122
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A0L0FPA9_9EUKA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPA9_9EUKA) HSP 1 Score: 70.9 bits (172), Expect = 1.140e-13 Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 1
Query: 4 RLRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVI-----QRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGG-----VSMPLSFDVLVATPDAF 276
+LR YQ RI E N+IVVLPTG+GKTLIA +I R LF+VPT L+DQQA + TGL V GG +S+ + DV+VA P AF
Sbjct: 17 QLRGYQERIVAEASERNSIVVLPTGTGKTLIACALILHLMRTRSARKTLFIVPTIALMDQQAAVIARETGLGVITMGGGRQPTRLSLK-NADVVVALPAAF 116 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig111730.2451.1 >prot_M-pyrifera_M_contig111730.2451.1 ID=prot_M-pyrifera_M_contig111730.2451.1|Name=mRNA_M-pyrifera_M_contig111730.2451.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp MRLRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTback to top mRNA from alignment at M-pyrifera_M_contig111730:131..406+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig111730.2451.1 ID=mRNA_M-pyrifera_M_contig111730.2451.1|Name=mRNA_M-pyrifera_M_contig111730.2451.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig111730:131..406+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig111730:131..406+ >mRNA_M-pyrifera_M_contig111730.2451.1 ID=mRNA_M-pyrifera_M_contig111730.2451.1|Name=mRNA_M-pyrifera_M_contig111730.2451.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig111730:131..406+ (Macrocystis pyrifera P11B4 male)back to top |