mRNA_M-pyrifera_M_contig111702.2448.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111702.2448.1
Unique NamemRNA_M-pyrifera_M_contig111702.2448.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Match: A0A7S3NJJ7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJJ7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 6.400e-22
Identity = 42/81 (51.85%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:   10 IDVILVGAGPGSLGCAALLARTGRRVLVLEQHDRAGGGSHAFSELGWEWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW 252
            +D + +G+G GSL  A++L++ G RVL+LEQHD AGG +H+F E G+EWDVG+HY+GD + +  S +R  FD VS GA++W
Sbjct:   67 VDYVFIGSGLGSLTLASILSKVGYRVLILEQHDVAGGATHSFEERGFEWDVGLHYVGDNLNKFYSISRRIFDLVSDGALEW 147
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BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Match: UPI001C4B3608 (all-trans-retinol 13,14-reductase-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4B3608)

HSP 1 Score: 93.2 bits (230), Expect = 6.870e-22
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    4 DRIDVILVGAGPGSLGCAALLARTGRRVLVLEQHDRAGGGSHAFSELGWEWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW 252
            + +D I++G+G G LG A LLA+ G++VLVLEQHDRAGG  H F+E G+E+DVG+HYIGD +  K    R   D ++ G +QW
Sbjct:   62 ENLDAIVIGSGIGGLGLAVLLAKVGKKVLVLEQHDRAGGCCHTFTEKGFEFDVGIHYIGDLLDHKPF--RCMLDQITNGQLQW 142
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BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Match: UPI00097D0BEE (putative all-trans-retinol 13,14-reductase n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097D0BEE)

HSP 1 Score: 95.9 bits (237), Expect = 3.020e-21
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    4 DRIDVILVGAGPGSLGCAALLARTGRRVLVLEQHDRAGGGSHAFSELGWEWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW 252
            D +D I++G+G G LG A LLA+ G++VLVLEQHDRAGG  H F+E G+E+DVG+HYIGD +  K    R   D ++ G +QW
Sbjct:   37 DNLDAIIIGSGVGGLGLAVLLAKVGKKVLVLEQHDRAGGCCHTFTEKGFEFDVGIHYIGDLLEHKPF--RCMLDQITNGQLQW 117
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BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Match: A0A3Q2PDR7_FUNHE (Retinol saturase n=8 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A3Q2PDR7_FUNHE)

HSP 1 Score: 95.9 bits (237), Expect = 3.070e-21
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    4 DRIDVILVGAGPGSLGCAALLARTGRRVLVLEQHDRAGGGSHAFSELGWEWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW 252
            D +D +++G+G G LG A LLA+ G+RVLVLEQHDRAGG  H F+E G+E+DVG+HYIGD +  K    R   D ++ G +QW
Sbjct:   62 DNLDAVVIGSGVGGLGLAVLLAKVGKRVLVLEQHDRAGGCCHTFTEKGFEFDVGIHYIGDLLEHKP--LRCMLDQMTNGQLQW 142
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BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Match: UPI0007B9F83E (all-trans-retinol 13,14-reductase isoform X3 n=2 Tax=Poecilia TaxID=8080 RepID=UPI0007B9F83E)

HSP 1 Score: 95.5 bits (236), Expect = 4.060e-21
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    4 DRIDVILVGAGPGSLGCAALLARTGRRVLVLEQHDRAGGGSHAFSELGWEWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW 252
            D +D +++G+G G LG A LLA+ G++VLVLEQHDRAGG  H F+E G+E+DVG+HYIGD + +  S  R   D ++ G +QW
Sbjct:   62 DNLDAVIIGSGVGGLGLAVLLAKVGKKVLVLEQHDRAGGCCHTFTEKGFEFDVGIHYIGDLLGD--SPFRCMLDQMTNGQLQW 142
[Close]
BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Match: A0A6P7XSH3_9AMPH (LOW QUALITY PROTEIN: all-trans-retinol 13,14-reductase-like n=1 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7XSH3_9AMPH)

HSP 1 Score: 95.5 bits (236), Expect = 4.190e-21
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    4 DRIDVILVGAGPGSLGCAALLARTGRRVLVLEQHDRAGGGSHAFSELGWEWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW 252
            + +DVI+VG+G G LG AALLA+ G+RVLVLEQH R GG  H F++ G+E+DVG+HYIG     K S TR   D ++ G +QW
Sbjct:   61 ENLDVIVVGSGIGGLGAAALLAKAGKRVLVLEQHSRVGGCCHTFNDKGYEFDVGIHYIGQMY--KMSMTRILMDQLTDGQLQW 141
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BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Match: UPI001BEB1B95 (all-trans-retinol 13,14-reductase n=1 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BEB1B95)

HSP 1 Score: 95.5 bits (236), Expect = 4.190e-21
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    4 DRIDVILVGAGPGSLGCAALLARTGRRVLVLEQHDRAGGGSHAFSELGWEWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW 252
            D +D I++G+G G LG A LLA+ G++VLVLEQHDRAGG  H F+E G+E+DVG+HYIGD +  K    R   D+++ G +QW
Sbjct:   61 DNLDAIIIGSGVGGLGLAVLLAKVGKKVLVLEQHDRAGGCCHTFTEKGFEFDVGIHYIGDLLDHKPF--RCMLDSLTNGQLQW 141
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BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Match: A0A3B3V4D1_9TELE (Putative all-trans-retinol 13,14-reductase n=9 Tax=Poeciliinae TaxID=586240 RepID=A0A3B3V4D1_9TELE)

HSP 1 Score: 95.5 bits (236), Expect = 4.200e-21
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    4 DRIDVILVGAGPGSLGCAALLARTGRRVLVLEQHDRAGGGSHAFSELGWEWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW 252
            D +D +++G+G G LG A LLA+ G++VLVLEQHDRAGG  H F+E G+E+DVG+HYIGD + +  S  R   D ++ G +QW
Sbjct:   62 DNLDAVIIGSGVGGLGLAVLLAKVGKKVLVLEQHDRAGGCCHTFTEKGFEFDVGIHYIGDLLGD--SPFRCMLDQMTNGQLQW 142
[Close]
BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Match: A0A7Y1VKF9_9FLAO (NAD(P)-binding protein (Fragment) n=1 Tax=Eudoraea sp. TaxID=1979955 RepID=A0A7Y1VKF9_9FLAO)

HSP 1 Score: 90.1 bits (222), Expect = 4.400e-21
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    4 DRIDVILVGAGPGSLGCAALLARTGRRVLVLEQHDRAGGGSHAFSELGWEWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW 252
            D+ D I++G+G G+L   ALL++ G++VL+LE+H   GG +H F   G+EWDVG+HYIG+ V   +SA R  FD +S G +QW
Sbjct:   13 DQYDTIIIGSGMGALAAGALLSKEGQKVLILERHYTPGGFTHVFKRKGYEWDVGIHYIGE-VSRPNSALRKMFDYISDGKLQW 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Match: A0A3M1PZY7_9BACT (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M1PZY7_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 4.640e-21
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    7 RIDVILVGAGPGSLGCAALLAR-TGRRVLVLEQHDRAGGGSHAFSELGWEWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW 252
            R D I++G+G G L  AALLAR  GRRVLVLE+H  AGG +H F+  G+EWDVGVHY+G       +  R AFD ++ G+++W
Sbjct:   37 RFDAIVIGSGIGGLSAAALLARHAGRRVLVLERHYTAGGFTHTFARPGYEWDVGVHYVGQT--RPGTLLRRAFDAITDGSLEW 117
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111702.2448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3NJJ7_9STRA6.400e-2251.85Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
UPI001C4B36086.870e-2251.81all-trans-retinol 13,14-reductase-like n=1 Tax=Ple... [more]
UPI00097D0BEE3.020e-2153.01putative all-trans-retinol 13,14-reductase n=1 Tax... [more]
A0A3Q2PDR7_FUNHE3.070e-2153.01Retinol saturase n=8 Tax=Cyprinodontoidei TaxID=80... [more]
UPI0007B9F83E4.060e-2151.81all-trans-retinol 13,14-reductase isoform X3 n=2 T... [more]
A0A6P7XSH3_9AMPH4.190e-2154.22LOW QUALITY PROTEIN: all-trans-retinol 13,14-reduc... [more]
UPI001BEB1B954.190e-2153.01all-trans-retinol 13,14-reductase n=1 Tax=Chelmon ... [more]
A0A3B3V4D1_9TELE4.200e-2151.81Putative all-trans-retinol 13,14-reductase n=9 Tax... [more]
A0A7Y1VKF9_9FLAO4.400e-2148.19NAD(P)-binding protein (Fragment) n=1 Tax=Eudoraea... [more]
A0A3M1PZY7_9BACT4.640e-2151.81FAD-dependent oxidoreductase (Fragment) n=1 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111702contigM-pyrifera_M_contig111702:335..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score96.7
Seed ortholog evalue5.6e-18
Seed eggNOG ortholog8081.XP_008415169.1
Preferred nameRETSAT
KEGG rclassRC01835
KEGG koko:K09516
KEGG ReactionR07163
KEGG Pathwayko00830,map00830
Hectar predicted targeting categoryother localisation
GOsGO:0001523,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005640,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0009987,GO:0010817,GO:0012505,GO:0016020,GO:0016101,GO:0016491,GO:0016627,GO:0019867,GO:0031090,GO:0031965,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0034308,GO:0034754,GO:0042175,GO:0042445,GO:0042572,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051786,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0098588,GO:0098805,GO:0098827,GO:1901615
EggNOG free text desc.Retinol saturase (all-trans-retinol 13,14-reductase)
EggNOG OGs38GIP@33154,3BGWD@33208,3CXHQ@33213,4899J@7711,492H2@7742,49QZU@7898,COG1233@1,KOG4254@2759
EC1.3.99.23
COG Functional cat.H
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size252
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.431487-CDS-M-pyrifera_M_contig111702:334..5861622815630.431487-CDS-M-pyrifera_M_contig111702:334..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111702 335..586 +
1692277495.7869508-CDS-M-pyrifera_M_contig111702:334..5861692277495.7869508-CDS-M-pyrifera_M_contig111702:334..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111702 335..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111702.2448.1prot_M-pyrifera_M_contig111702.2448.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111702 335..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111702.2448.1

>prot_M-pyrifera_M_contig111702.2448.1 ID=prot_M-pyrifera_M_contig111702.2448.1|Name=mRNA_M-pyrifera_M_contig111702.2448.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MDRIDVILVGAGPGSLGCAALLARTGRRVLVLEQHDRAGGGSHAFSELGW
EWDVGVHYIGDRVWEKSSATRAAFDTVSCGAIQW
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mRNA from alignment at M-pyrifera_M_contig111702:335..586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111702.2448.1 ID=mRNA_M-pyrifera_M_contig111702.2448.1|Name=mRNA_M-pyrifera_M_contig111702.2448.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig111702:335..586+ (Macrocystis pyrifera P11B4 male)
ATGGACCGGATTGATGTGATTCTTGTGGGTGCGGGACCTGGTAGCTTAGG
ATGTGCTGCTTTGTTGGCGCGTACAGGACGCAGAGTACTCGTGTTGGAAC
AACATGATCGTGCTGGAGGCGGAAGCCACGCATTTTCAGAACTTGGATGG
GAGTGGGATGTTGGAGTCCACTACATTGGAGATCGTGTGTGGGAGAAATC
AAGCGCAACTCGTGCTGCATTTGATACAGTGAGCTGCGGAGCAATCCAAT
GG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111702:335..586+

>mRNA_M-pyrifera_M_contig111702.2448.1 ID=mRNA_M-pyrifera_M_contig111702.2448.1|Name=mRNA_M-pyrifera_M_contig111702.2448.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig111702:335..586+ (Macrocystis pyrifera P11B4 male)
ATGGACCGGATTGATGTGATTCTTGTGGGTGCGGGACCTGGTAGCTTAGG
ATGTGCTGCTTTGTTGGCGCGTACAGGACGCAGAGTACTCGTGTTGGAAC
AACATGATCGTGCTGGAGGCGGAAGCCACGCATTTTCAGAACTTGGATGG
GAGTGGGATGTTGGAGTCCACTACATTGGAGATCGTGTGTGGGAGAAATC
AAGCGCAACTCGTGCTGCATTTGATACAGTGAGCTGCGGAGCAATCCAAT
GGATGGACCGGATTGATGTGATTCTTGTGGGTGCGGGACCTGGTAGCTTA
GGATGTGCTGCTTTGTTGGCGCGTACAGGACGCAGAGTACTCGTGTTGGA
ACAACATGATCGTGCTGGAGGCGGAAGCCACGCATTTTCAGAACTTGGAT
GGGAGTGGGATGTTGGAGTCCACTACATTGGAGATCGTGTGTGGGAGAAA
TCAAGCGCAACTCGTGCTGCATTTGATACAGTGAGCTGCGGAGCAATCCA
ATGG
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