mRNA_M-pyrifera_M_contig1117.2443.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1117.2443.1
Unique NamemRNA_M-pyrifera_M_contig1117.2443.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1117.2443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1117contigM-pyrifera_M_contig1117:2725..3284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size560
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1117.2443.1prot_M-pyrifera_M_contig1117.2443.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1117 2833..3168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.9083776-UTR-M-pyrifera_M_contig1117:2724..28321622815629.9083776-UTR-M-pyrifera_M_contig1117:2724..2832Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1117 2725..2832 +
1692277495.4643993-UTR-M-pyrifera_M_contig1117:2724..28321692277495.4643993-UTR-M-pyrifera_M_contig1117:2724..2832Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1117 2725..2832 +
1622815629.937333-UTR-M-pyrifera_M_contig1117:3168..32841622815629.937333-UTR-M-pyrifera_M_contig1117:3168..3284Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1117 3169..3284 +
1692277495.4855585-UTR-M-pyrifera_M_contig1117:3168..32841692277495.4855585-UTR-M-pyrifera_M_contig1117:3168..3284Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1117 3169..3284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.920867-CDS-M-pyrifera_M_contig1117:2832..31681622815629.920867-CDS-M-pyrifera_M_contig1117:2832..3168Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1117 2833..3168 +
1692277495.4757385-CDS-M-pyrifera_M_contig1117:2832..31681692277495.4757385-CDS-M-pyrifera_M_contig1117:2832..3168Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1117 2833..3168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1117.2443.1

>prot_M-pyrifera_M_contig1117.2443.1 ID=prot_M-pyrifera_M_contig1117.2443.1|Name=mRNA_M-pyrifera_M_contig1117.2443.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MVWIMYITSTSNCEPEGYREETAPLMVVGGMPSYITCKPNNARKQKQYIR
TYYCTSENSSRSSVKTKPRRKTCDLDADAETLETLFARGSICVPQLALPQ
YVKERVLCEGR*
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mRNA from alignment at M-pyrifera_M_contig1117:2725..3284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1117.2443.1 ID=mRNA_M-pyrifera_M_contig1117.2443.1|Name=mRNA_M-pyrifera_M_contig1117.2443.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=560bp|location=Sequence derived from alignment at M-pyrifera_M_contig1117:2725..3284+ (Macrocystis pyrifera P11B4 male)
CTTAGAAATAACTGCTTGAAACTGGAGTGTGTCCAACATATATTACGAGG
GCTGCTATCCAACATGCCCCGCGTACCTTTTCAAACGTGAACACTCAACA
CAGGGGGTATGGTATGGATAATGTATATAACAAGTACTTCTAACTGCGAA
CCTGAAGGGTATCGTGAAGAAACCGCACCACTAATGGTGGTGGGTGGTAT
GCCATCATATATCACTTGCAAACCAAATAACGCCAGGAAACAAAAACAGT
ATATACGTACCTACTACTGTACGTCCGAAAACAGTTCGCGGTCGAGTGTG
AAGACGAAGCCAAGAAGAAAAACATGTGATCTTGACGCCGATGCGGAGAC
CCTAGAAACCCTGTTTGCCAGGGGTTCTATTTGTGTGCCCCAACTGGCGT
TGCCGCAGTACGTGAAAGAAAGGGTATTATGCGAGGGACGGTGACCTTAC
CATCCTGTTTCACTCGCAGTCCAACAAACACAAGATATCGCCATGCCAAC
ACCCAAGAGAAAGGGAGTTTGAGGGCAAAACTATAAAGAAAAAAAAGCAT
TAACACTTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1117:2725..3284+

>mRNA_M-pyrifera_M_contig1117.2443.1 ID=mRNA_M-pyrifera_M_contig1117.2443.1|Name=mRNA_M-pyrifera_M_contig1117.2443.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig1117:2725..3284+ (Macrocystis pyrifera P11B4 male)
ATGGTATGGATAATGTATATAACAAGTACTTCTAACTGCGAACCTGAAGG
GTATCGTGAAGAAACCGCACCACTAATGGTGGTGGGTGGTATGCCATCAT
ATATCACTTGCAAACCAAATAACGCCAGGAAACAAAAACAGTATATACGT
ACCTACTACTGTACGTCCGAAAACAGTTCGCGGTCGAGTGTGAAGACGAA
GCCAAGAAGAAAAACATGTGATCTTGACGCCGATGCGGAGACCCTAGAAA
CCCTGTTTGCCAGGGGTTCTATTTGTGTGCCCCAACTGGCGTTGCCGCAG
TACGTGAAAGAAAGGGTATTATGCGAGGGACGGTGAATGGTATGGATAAT
GTATATAACAAGTACTTCTAACTGCGAACCTGAAGGGTATCGTGAAGAAA
CCGCACCACTAATGGTGGTGGGTGGTATGCCATCATATATCACTTGCAAA
CCAAATAACGCCAGGAAACAAAAACAGTATATACGTACCTACTACTGTAC
GTCCGAAAACAGTTCGCGGTCGAGTGTGAAGACGAAGCCAAGAAGAAAAA
CATGTGATCTTGACGCCGATGCGGAGACCCTAGAAACCCTGTTTGCCAGG
GGTTCTATTTGTGTGCCCCAACTGGCGTTGCCGCAGTACGTGAAAGAAAG
GGTATTATGCGAGGGACGGTGA
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