mRNA_M-pyrifera_M_contig111679.2437.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111679.2437.1
Unique NamemRNA_M-pyrifera_M_contig111679.2437.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111679.2437.1 vs. uniprot
Match: A0A3C1EKU0_9BACT (Uncharacterized protein n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A3C1EKU0_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 1.200e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:    4 LGILDKPGLGPWAVKVALQHVRKVLLQKPKDGTTSSPLDISPAWIDPILESAANTPIQIRDDAADLGTRVHELLEKYVDGTENASTVMQHADEDTRCMIEGFVNWHQQSGLRLEM 348
            LGI+ KP L PWA + AL  V   L+ +  DG   + + ++ AWID IL  A   P QI+D+AADLGTR H  ++  + G E   TV      +    +  F +W + SG+ L M
Sbjct:   41 LGIISKPALVPWAKREALAMVESALVNR-LDGKRCAQIVLNKAWIDNILIDAKKRPDQIKDEAADLGTRAHAFIDLIIHGQE-PDTV----PPEIEAPVNAFKDWWKGSGIELVM 149
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BLAST of mRNA_M-pyrifera_M_contig111679.2437.1 vs. uniprot
Match: A0A0F8WSS2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8WSS2_9ZZZZ)

HSP 1 Score: 63.2 bits (152), Expect = 2.110e-10
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    7 GILDKPGLGPWAVKVALQHVRKVLLQKPKDGTTSSPLDISPAWIDPILESAANTPIQIRDDAADLGTRVHELLEKY 234
            G+++KP L PWAVK+A  H+R+ L +   +  T   LD       PI+E A N  I+++++AA  G++VHE  EKY
Sbjct:   46 GVINKPALVPWAVKLAGTHIRQYLEKSKTNKFTKEELD-------PIIEEALNKHIKVKEEAAGFGSKVHEWAEKY 114
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111679.2437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3C1EKU0_9BACT1.200e-1338.26Uncharacterized protein n=1 Tax=Elusimicrobia bact... [more]
A0A0F8WSS2_9ZZZZ2.110e-1040.79Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111679contigM-pyrifera_M_contig111679:243..590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.722875-CDS-M-pyrifera_M_contig111679:242..5901622815629.722875-CDS-M-pyrifera_M_contig111679:242..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111679 243..590 +
1692277495.3950574-CDS-M-pyrifera_M_contig111679:242..5901692277495.3950574-CDS-M-pyrifera_M_contig111679:242..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111679 243..590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111679.2437.1prot_M-pyrifera_M_contig111679.2437.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111679 243..590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111679.2437.1

>prot_M-pyrifera_M_contig111679.2437.1 ID=prot_M-pyrifera_M_contig111679.2437.1|Name=mRNA_M-pyrifera_M_contig111679.2437.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
VLGILDKPGLGPWAVKVALQHVRKVLLQKPKDGTTSSPLDISPAWIDPIL
ESAANTPIQIRDDAADLGTRVHELLEKYVDGTENASTVMQHADEDTRCMI
EGFVNWHQQSGLRLEM
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mRNA from alignment at M-pyrifera_M_contig111679:243..590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111679.2437.1 ID=mRNA_M-pyrifera_M_contig111679.2437.1|Name=mRNA_M-pyrifera_M_contig111679.2437.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig111679:243..590+ (Macrocystis pyrifera P11B4 male)
GTTCTGGGGATATTAGATAAACCTGGGTTGGGTCCTTGGGCTGTAAAAGT
TGCATTACAGCATGTGAGAAAAGTGTTGTTGCAGAAACCGAAGGATGGCA
CAACTTCCAGCCCATTGGACATTTCGCCTGCTTGGATTGATCCCATTCTG
GAATCTGCAGCGAATACACCGATCCAAATCAGGGACGATGCAGCAGATTT
GGGGACGCGTGTGCATGAATTGTTGGAAAAATACGTAGATGGTACAGAAA
ATGCCTCGACAGTTATGCAGCATGCAGATGAGGACACTAGGTGTATGATT
GAAGGGTTTGTGAACTGGCATCAGCAGTCAGGGTTGAGGTTGGAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111679:243..590+

>mRNA_M-pyrifera_M_contig111679.2437.1 ID=mRNA_M-pyrifera_M_contig111679.2437.1|Name=mRNA_M-pyrifera_M_contig111679.2437.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig111679:243..590+ (Macrocystis pyrifera P11B4 male)
GTTCTGGGGATATTAGATAAACCTGGGTTGGGTCCTTGGGCTGTAAAAGT
TGCATTACAGCATGTGAGAAAAGTGTTGTTGCAGAAACCGAAGGATGGCA
CAACTTCCAGCCCATTGGACATTTCGCCTGCTTGGATTGATCCCATTCTG
GAATCTGCAGCGAATACACCGATCCAAATCAGGGACGATGCAGCAGATTT
GGGGACGCGTGTGCATGAATTGTTGGAAAAATACGTAGATGGTACAGAAA
ATGCCTCGACAGTTATGCAGCATGCAGATGAGGACACTAGGTGTATGATT
GAAGGGTTTGTGAACTGGCATCAGCAGTCAGGGTTGAGGTTGGAGATGGT
TCTGGGGATATTAGATAAACCTGGGTTGGGTCCTTGGGCTGTAAAAGTTG
CATTACAGCATGTGAGAAAAGTGTTGTTGCAGAAACCGAAGGATGGCACA
ACTTCCAGCCCATTGGACATTTCGCCTGCTTGGATTGATCCCATTCTGGA
ATCTGCAGCGAATACACCGATCCAAATCAGGGACGATGCAGCAGATTTGG
GGACGCGTGTGCATGAATTGTTGGAAAAATACGTAGATGGTACAGAAAAT
GCCTCGACAGTTATGCAGCATGCAGATGAGGACACTAGGTGTATGATTGA
AGGGTTTGTGAACTGGCATCAGCAGTCAGGGTTGAGGTTGGAGATG
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