mRNA_M-pyrifera_M_contig111678.2436.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111678.2436.1
Unique NamemRNA_M-pyrifera_M_contig111678.2436.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Match: A0A6I6ABZ6_9PLAN (Uncharacterized protein n=7 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ABZ6_9PLAN)

HSP 1 Score: 253 bits (646), Expect = 5.550e-82
Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 1
Query:    1 FQNANDTLKVSNALDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTPSAPPSASWVFDPKPMLMQNPKSR 381
            FQNAN+TLKVSNALDRAAENAWSLAKALRNAKSY FPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTPSAPPSASWVFDPKPMLMQNPKSR
Sbjct:  230 FQNANETLKVSNALDRAAENAWSLAKALRNAKSYNFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTPSAPPSASWVFDPKPMLMQNPKSR 356          
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Match: A0A518I569_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I569_9PLAN)

HSP 1 Score: 225 bits (574), Expect = 4.280e-71
Identity = 107/127 (84.25%), Postives = 119/127 (93.70%), Query Frame = 1
Query:    1 FQNANDTLKVSNALDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTPSAPPSASWVFDPKPMLMQNPKSR 381
            FQNA+  LKVSN+LD+AAENAW+LAKALRNAKSYGFPAG+PRNIDAYVLHEKYRSIV VGSFD+ADDPRI  YAKLFG+K+KPHPE+GVETMTAEYFVIPG TP +PP+ASWVFDPKP LMQNPK+R
Sbjct:  230 FQNASSNLKVSNSLDQAAENAWTLAKALRNAKSYGFPAGSPRNIDAYVLHEKYRSIVAVGSFDTADDPRITAYAKLFGAKLKPHPESGVETMTAEYFVIPGKTPQSPPAASWVFDPKPTLMQNPKAR 356          
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Match: A0A517W4F6_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W4F6_9PLAN)

HSP 1 Score: 219 bits (559), Expect = 7.860e-69
Identity = 103/127 (81.10%), Postives = 119/127 (93.70%), Query Frame = 1
Query:    1 FQNANDTLKVSNALDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTPSAPPSASWVFDPKPMLMQNPKSR 381
            FQNA++TLK+SNALD+AAENAWSLAKALRNAKSYGFPA AP+NIDAY+LHEKYRS+VTVGSFDS +DPR+ EYAKLFG+KMK HPETGVE+MTAEYFVIPG TP +PP ASWVFDPKP L++NPK++
Sbjct:  230 FQNASETLKISNALDQAAENAWSLAKALRNAKSYGFPASAPQNIDAYILHEKYRSVVTVGSFDSPNDPRLVEYAKLFGAKMKKHPETGVESMTAEYFVIPGKTPQSPPVASWVFDPKPTLIRNPKAK 356          
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Match: A0A3C0AE06_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AE06_9PLAN)

HSP 1 Score: 190 bits (482), Expect = 2.470e-59
Identity = 91/127 (71.65%), Postives = 108/127 (85.04%), Query Frame = 1
Query:    1 FQNANDTLKVSNALDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTPSAPPSASWVFDPKPMLMQNPKSR 381
            F NA+++  VSN+LD+AA+NAW L KALR AK +GFPAG   +IDAYVLHEKYRSIVTVGSFDS  DPRI+ YAKLFGSKM+PHPETGVE MT+EYF+IPG++  APP ASWVFDPKP LMQ P+++
Sbjct:   64 FANASESETVSNSLDKAAQNAWLLTKALREAKKHGFPAGNATDIDAYVLHEKYRSIVTVGSFDSPQDPRIEAYAKLFGSKMRPHPETGVEAMTSEYFIIPGASAGAPPLASWVFDPKPNLMQVPRAK 190          
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Match: A6C8D6_9PLAN (Uncharacterized protein n=10 Tax=Planctomycetaceae TaxID=126 RepID=A6C8D6_9PLAN)

HSP 1 Score: 189 bits (479), Expect = 8.800e-57
Identity = 90/125 (72.00%), Postives = 107/125 (85.60%), Query Frame = 1
Query:    1 FQNANDTLKVSNALDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTPSAPPSASWVFDPKPMLMQNPK 375
            F NA+++ ++SN+LD AA+NAW L KALR AK YGFPAG   +IDAYVLHEKYRSIVTVGSF   DDPRI+ YAKLFGSKM+PHPETGV+ MT+EYF+IPG++P APP ASWVFDPKP+L+Q PK
Sbjct:  230 FTNASESEELSNSLDIAAQNAWLLTKALREAKKYGFPAGNATDIDAYVLHEKYRSIVTVGSFKGPDDPRIEPYAKLFGSKMRPHPETGVKAMTSEYFIIPGTSPGAPPLASWVFDPKPVLIQVPK 354          
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Match: A0A3L7NDW1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7NDW1_9BACT)

HSP 1 Score: 107 bits (267), Expect = 4.400e-25
Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   40 LDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTPSAP-PSASWVFDPKPMLMQNPKSR 381
            LD  AENA  L   LRNAK YG+      N DA+V H+KY+SIVT+GSFDS DDPRI+  A  +G K   HP TG E +  E F +P  T +   P+ SW+FD +P LM+ P+ R
Sbjct:  292 LDDCAENAMLLTDKLRNAKKYGYDT----NYDAWVYHDKYKSIVTIGSFDSKDDPRIRTMATQYGGKTVRHPSTGEEVLAGEIFAVPKVTKNNELPAHSWIFDAQPRLMEVPRVR 402          
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Match: A0A3L7RID1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7RID1_9BACT)

HSP 1 Score: 102 bits (254), Expect = 1.800e-23
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   40 LDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTPSAP--PSASWVFDPKPMLMQNPKSR 381
            LD  AENA  L + +RNAK +G+      N DA+V H+KY+S+V VGSFDS DDP+++  A  FG KM  HP+TG + +T E F +P   P A   P  SW+FD KP LM+ P+ R
Sbjct:  243 LDVCAENAMFLTEKMRNAKKHGYDT----NFDAWVYHDKYQSLVLVGSFDSKDDPQVRLLATKFGGKMIRHPKTGDDVLTGETFTVP-KIPKANQLPDYSWLFDVKPQLMEVPRLR 353          
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Match: A0A518CUC0_9PLAN (Uncharacterized protein n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CUC0_9PLAN)

HSP 1 Score: 101 bits (251), Expect = 7.810e-23
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 FQNANDTLKVSNALDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGS-TPSAPPSASWVFDPKPMLMQNPK 375
            F+  N++ ++  +LD +A  AW   KA+R A +YG+     +N +AYVLH +Y+S VT+GSFD+A+DPRI+E  +L G+K++        +M AE F IP    P   P  SW+FDP+P L   PK
Sbjct:  271 FKKNNNSQELGTSLDDSAFKAWEFCKAMRTASNYGYD----QNYEAYVLHTRYKSYVTIGSFDNAEDPRIEEMKQLMGAKVRQTSGGSSASMFAEMFSIPKQPAPGQAPQKSWMFDPEPQLSAIPK 392          
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Match: D5SR85_PLAL2 (Uncharacterized protein n=3 Tax=Planctopirus TaxID=1649480 RepID=D5SR85_PLAL2)

HSP 1 Score: 93.6 bits (231), Expect = 3.340e-20
Identity = 47/111 (42.34%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   40 LDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTPSAPPSASWVFDPKPMLMQNP 372
            L+ A E+A  L +ALR            + IDAY  H ++ SIVTVG+F S +DPRI+E+AK+FG++MK +P TG+E  T+E  ++PG  P+ PP   ++F+  P +M+ P
Sbjct:  244 LNLAGEDAEQLTRALRQ-----------KGIDAYCYHGRFESIVTVGAFQSKEDPRIQEFAKVFGARMKLNPATGIENYTSETLILPGPKPTDPPVKVFIFEANPTVMEIP 343          
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Match: A0A1P8WB91_9PLAN (Uncharacterized protein n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WB91_9PLAN)

HSP 1 Score: 92.8 bits (229), Expect = 7.190e-20
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   34 NALDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLHEKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIPGSTP-SAPPSASWVFDPKPMLMQNPK 375
            N LD A   AW L +ALR A+  G+     R+ +A+V H++Y S VTVGSFD+ DDPRI + AKLF  K + +   G E MTAE   IP   P    P  +W+FD KP L++ P+
Sbjct:  244 NNLDAAGRKAWELTEALRAARKLGYD----RDHEAWVFHDRYESYVTVGSFDTPDDPRISQLAKLFNGKTRIY--EGKEVMTAEVMTIPRHVPVGQQPEKTWMFDTKPRLIEVPR 352          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111678.2436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6ABZ6_9PLAN5.550e-8298.43Uncharacterized protein n=7 Tax=Gimesia TaxID=1649... [more]
A0A518I569_9PLAN4.280e-7184.25Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517W4F6_9PLAN7.860e-6981.10Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A3C0AE06_9PLAN2.470e-5971.65Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A6C8D6_9PLAN8.800e-5772.00Uncharacterized protein n=10 Tax=Planctomycetaceae... [more]
A0A3L7NDW1_9BACT4.400e-2549.57Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3L7RID1_9BACT1.800e-2348.28Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518CUC0_9PLAN7.810e-2342.06Uncharacterized protein n=1 Tax=Polystyrenella lon... [more]
D5SR85_PLAL23.340e-2042.34Uncharacterized protein n=3 Tax=Planctopirus TaxID... [more]
A0A1P8WB91_9PLAN7.190e-2045.22Uncharacterized protein n=1 Tax=Fuerstiella marisg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111678contigM-pyrifera_M_contig111678:3..386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score190.3
Seed ortholog evalue5.7e-46
Seed eggNOG ortholog344747.PM8797T_08054
Hectar predicted targeting categoryother localisation
EggNOG OGs29VW5@1,2IZ78@203682,30HE0@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.6524723-CDS-M-pyrifera_M_contig111678:2..3861622815629.6524723-CDS-M-pyrifera_M_contig111678:2..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111678 3..386 +
1692277495.3849769-CDS-M-pyrifera_M_contig111678:2..3861692277495.3849769-CDS-M-pyrifera_M_contig111678:2..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111678 3..386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111678.2436.1prot_M-pyrifera_M_contig111678.2436.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111678 3..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111678.2436.1

>prot_M-pyrifera_M_contig111678.2436.1 ID=prot_M-pyrifera_M_contig111678.2436.1|Name=mRNA_M-pyrifera_M_contig111678.2436.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
FQNANDTLKVSNALDRAAENAWSLAKALRNAKSYGFPAGAPRNIDAYVLH
EKYRSIVTVGSFDSADDPRIKEYAKLFGSKMKPHPETGVETMTAEYFVIP
GSTPSAPPSASWVFDPKPMLMQNPKSR*
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mRNA from alignment at M-pyrifera_M_contig111678:3..386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111678.2436.1 ID=mRNA_M-pyrifera_M_contig111678.2436.1|Name=mRNA_M-pyrifera_M_contig111678.2436.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig111678:3..386+ (Macrocystis pyrifera P11B4 male)
TTTCAAAATGCCAATGATACTCTGAAAGTCAGCAACGCCCTGGACCGGGC TGCCGAAAATGCCTGGTCACTGGCCAAAGCATTACGTAACGCGAAAAGCT ATGGCTTCCCTGCGGGTGCCCCCCGAAATATCGATGCGTACGTTTTACAC GAAAAGTACCGCTCCATTGTGACCGTCGGTTCGTTTGACTCTGCCGACGA TCCCCGGATCAAGGAATACGCTAAACTCTTCGGCTCTAAAATGAAGCCGC ACCCGGAAACCGGCGTGGAGACCATGACCGCGGAATACTTCGTGATTCCC GGCAGCACCCCCTCTGCACCTCCGTCAGCCTCCTGGGTCTTCGACCCCAA ACCAATGCTGATGCAGAATCCCAAGTCCCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111678:3..386+

>mRNA_M-pyrifera_M_contig111678.2436.1 ID=mRNA_M-pyrifera_M_contig111678.2436.1|Name=mRNA_M-pyrifera_M_contig111678.2436.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig111678:3..386+ (Macrocystis pyrifera P11B4 male)
TTTCAAAATGCCAATGATACTCTGAAAGTCAGCAACGCCCTGGACCGGGC
TGCCGAAAATGCCTGGTCACTGGCCAAAGCATTACGTAACGCGAAAAGCT
ATGGCTTCCCTGCGGGTGCCCCCCGAAATATCGATGCGTACGTTTTACAC
GAAAAGTACCGCTCCATTGTGACCGTCGGTTCGTTTGACTCTGCCGACGA
TCCCCGGATCAAGGAATACGCTAAACTCTTCGGCTCTAAAATGAAGCCGC
ACCCGGAAACCGGCGTGGAGACCATGACCGCGGAATACTTCGTGATTCCC
GGCAGCACCCCCTCTGCACCTCCGTCAGCCTCCTGGGTCTTCGACCCCAA
ACCAATGCTGATGCAGAATCCCAAGTCCCGCTGATTTCAAAATGCCAATG
ATACTCTGAAAGTCAGCAACGCCCTGGACCGGGCTGCCGAAAATGCCTGG
TCACTGGCCAAAGCATTACGTAACGCGAAAAGCTATGGCTTCCCTGCGGG
TGCCCCCCGAAATATCGATGCGTACGTTTTACACGAAAAGTACCGCTCCA
TTGTGACCGTCGGTTCGTTTGACTCTGCCGACGATCCCCGGATCAAGGAA
TACGCTAAACTCTTCGGCTCTAAAATGAAGCCGCACCCGGAAACCGGCGT
GGAGACCATGACCGCGGAATACTTCGTGATTCCCGGCAGCACCCCCTCTG
CACCTCCGTCAGCCTCCTGGGTCTTCGACCCCAAACCAATGCTGATGCAG
AATCCCAAGTCCCGCTGA
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