mRNA_M-pyrifera_M_contig111657.2429.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111657.2429.1
Unique NamemRNA_M-pyrifera_M_contig111657.2429.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Match: J0WTR6_AURST (Thioredoxin-like_fold domain-containing protein n=1 Tax=Auricularia subglabra (strain TFB-10046 / SS5) TaxID=717982 RepID=J0WTR6_AURST)

HSP 1 Score: 80.1 bits (196), Expect = 2.070e-16
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:    1 MYRERDRLIDETIVDLSRFAIY-DVAATMAEEVGVDK-AAVLALLELQ--PKGGTKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLA 297
            ++  +D   D    DL+   I   +AA  A  +G DK AAVL LL L+  P GG  VT  LK  +K  R  SIHV+PT ++N L+AN++SSSWG  EW DFLA
Sbjct:  100 LFEHQDEYFDIPTADLTPTQIRAKLAALAASVIGQDKEAAVLDLLALKGSPNGGNAVTDDLKYLIKFSRQNSIHVSPTVLLNGLVANEISSSWGEKEWTDFLA 202
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BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Match: M5BJ18_THACB (Uncharacterized protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=M5BJ18_THACB)

HSP 1 Score: 75.1 bits (183), Expect = 2.090e-15
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    1 MYRERDRLIDETIVDLSRFAIYDVAATMAEEVGVDKAAVLALLELQ--PKGGTKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLAPLV 306
            +++ +++  D     L+   I +    +A E GVDK AV  LLEL+  P GG  VT  LK  +K  R   +HVTP+A+ + L+ N+VSSSWG DEW+ FL   V
Sbjct:    6 LFKAQEQFFDIPTSTLTPLQIREKLVALAPE-GVDKKAVADLLELKSTPNGGVSVTDDLKYNIKLGRQNGVHVTPSALWDGLLVNEVSSSWGKDEWQKFLEAKV 108
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BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Match: A0A8H3CUB9_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3CUB9_9AGAM)

HSP 1 Score: 77.0 bits (188), Expect = 2.830e-15
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    1 MYRERDRLIDETIVDLSRFAIYDVAATMAEEVGVDKAAVLALLELQ--PKGGTKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLAPLV 306
            +++ +D+  D     L+   I +    +  E G+DK AV  LLEL+  P GGT VT  LK  +K  R   IHV+P+A+ + L+ANDVSSSWG DEW  FL   V
Sbjct:   97 LFKVQDQFFDIPTSTLTPLQIREKLVAIVPE-GIDKQAVAGLLELKSTPNGGTGVTDDLKYNIKLGRQNGIHVSPSALWDGLLANDVSSSWGKDEWERFLEAKV 199
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BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Match: A0A0B7FX47_THACB (Thioredoxin-like_fold domain-containing protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0B7FX47_THACB)

HSP 1 Score: 75.1 bits (183), Expect = 1.560e-14
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    1 MYRERDRLIDETIVDLSRFAIYDVAATMAEEVGVDKAAVLALLELQ--PKGGTKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLAPLV 306
            +++ +++  D     L+   I +    +A E GVDK AV  LLEL+  P GG  VT  LK  +K  R   +HVTP+A+ + L+ N+VSSSWG DEW+ FL   V
Sbjct:   97 LFKAQEQFFDIPTSTLTPLQIREKLVALAPE-GVDKKAVADLLELKSTPNGGVSVTDDLKYNIKLGRQNGVHVTPSALWDGLLVNEVSSSWGKDEWQKFLEAKV 199
[Close]
BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Match: A0A8H3DVQ0_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3DVQ0_9AGAM)

HSP 1 Score: 75.1 bits (183), Expect = 1.560e-14
Identity = 45/104 (43.27%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    1 MYRERDRLIDETIVDLSRFAIYDVAATMAEEVGVDKAAVLALLELQ--PKGGTKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLAPLV 306
            ++  +    D     L+   I +    +A E GVDK AV  LLEL+  P GG  VT  LK  +K  R   IHVTP+A+ + L+ANDVSSSWG +EW  FL   V
Sbjct:   97 LFNAQTEFFDIPTSTLTPLQIREKLVALAPE-GVDKKAVAGLLELKSTPNGGVSVTDDLKYNIKLGRQNGIHVTPSALWDGLLANDVSSSWGKEEWEKFLEAKV 199
[Close]
BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Match: A0A8H5GES7_9AGAR (Thioredoxin-like_fold domain-containing protein n=1 Tax=Leucoagaricus leucothites TaxID=201217 RepID=A0A8H5GES7_9AGAR)

HSP 1 Score: 74.7 bits (182), Expect = 2.350e-14
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:    1 MYRERDRLIDETIVDLSRFAIYDVAATMAEEV----GVDKAAVLALLELQPKGGTKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLAPLV 306
            ++  +D   D+  +DL+   I D  A++A +V     V+K   L  L+    GG  VT  LK  +K  R  SIHV+PTA+ + LIANDVSSSWG  EW DF A  V
Sbjct:   98 LFDNQDDYFDKATLDLTPRQIRDKLASLAGQVISREAVEKFRDLLALKGSANGGNGVTDDLKYNIKFARQNSIHVSPTALWDGLIANDVSSSWGEKEWTDFFAAKV 203
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BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Match: W3X5G7_PESFW (Thioredoxin-like_fold domain-containing protein n=1 Tax=Pestalotiopsis fici (strain W106-1 / CGMCC3.15140) TaxID=1229662 RepID=W3X5G7_PESFW)

HSP 1 Score: 73.2 bits (178), Expect = 1.140e-13
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:    1 MYRERDRLIDETIVDLSRFAIYDVAATMAEEVGVDKAAVLALLELQPK--------GGTKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLAPLV 306
            +++++    D  +V+ +R   Y   A +A  VGVD+A V   L++  K         G KVT   K  VK  R   +HV+PTA+ + ++AND+SS WG  EW D+L   V
Sbjct:  108 LFKQQKEYFDVNVVNETRNDTYKRLAKLAASVGVDEAQVFDRLKISDKPGEDGSLNSGNKVTNDFKVLVKMARLVGVHVSPTAIFDGVVANDISSGWGKQEWADWLTKNV 217
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BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Match: A0A0L0H6D4_SPIPD (Thioredoxin-like_fold domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H6D4_SPIPD)

HSP 1 Score: 72.4 bits (176), Expect = 1.460e-13
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:   28 DETIVDLSRFAIYD-VAATMAEEVGVDKAAVLALLELQPKG---GTKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLAPLV 306
            D    +LSR  IY+ +   +++ VGVDK  V  LL   PK    G  VT  LK ++K  R  S+HV+PT +VN L+ N VSSSWG +EW+++L+ L+
Sbjct:   99 DAKTYELSRKDIYEKLVGIVSDGVGVDKEEVFKLLT--PKATNEGNAVTPVLKVHLKIARQNSVHVSPTVLVNGLVDNSVSSSWGVEEWKEYLSKLL 193
[Close]
BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Match: A0A8H8IXX8_9AGAM (Thioredoxin n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8IXX8_9AGAM)

HSP 1 Score: 72.4 bits (176), Expect = 1.560e-13
Identity = 44/104 (42.31%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    1 MYRERDRLIDETIVDLSRFAIYDVAATMAEEVGVDKAAVLALL--ELQPKGGTKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLAPLV 306
            +++E++   D     L+   I +    +A   GVDK+ V  LL  +  P GG  VT  LK  +K  R   IHVTPTA+ + L ANDVSSSWG DEW  FL+  V
Sbjct:   93 LFKEQEAFFDIPASSLTPTQIREKLVALAPS-GVDKSKVQDLLTHKTTPNGGVDVTDDLKYNIKLGRQNGIHVTPTALWDGLAANDVSSSWGEDEWNKFLSSKV 195
[Close]
BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Match: A0A8H3DVV5_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3DVV5_9AGAM)

HSP 1 Score: 72.4 bits (176), Expect = 1.680e-13
Identity = 44/104 (42.31%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:    1 MYRERDRLIDETIVDLSRFAIYDVAATMAEEVGVDKAAVLALLELQ--PKGGTKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLAPLV 306
            ++  +    D     L+   I +    +A E GV+K AV  LLEL+  P GG  VT  LK  VK  R   IHVTP+A+ + L+ NDVSSSWG +EW  FL   V
Sbjct:   97 LFNAQSEFFDIPTSTLTPLQIREKLVALAPE-GVNKTAVAGLLELKSPPNGGVDVTDDLKYNVKLGRQNGIHVTPSALWDGLLVNDVSSSWGKEEWEKFLEAKV 199
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111657.2429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
J0WTR6_AURST2.070e-1646.60Thioredoxin-like_fold domain-containing protein n=... [more]
M5BJ18_THACB2.090e-1541.35Uncharacterized protein n=2 Tax=Rhizoctonia solani... [more]
A0A8H3CUB9_9AGAM2.830e-1543.27Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A0B7FX47_THACB1.560e-1441.35Thioredoxin-like_fold domain-containing protein n=... [more]
A0A8H3DVQ0_9AGAM1.560e-1443.27Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A8H5GES7_9AGAR2.350e-1442.45Thioredoxin-like_fold domain-containing protein n=... [more]
W3X5G7_PESFW1.140e-1335.45Thioredoxin-like_fold domain-containing protein n=... [more]
A0A0L0H6D4_SPIPD1.460e-1343.30Thioredoxin-like_fold domain-containing protein n=... [more]
A0A8H8IXX8_9AGAM1.560e-1342.31Thioredoxin n=2 Tax=Ceratobasidium sp. AG-Ba TaxID... [more]
A0A8H3DVV5_9AGAM1.680e-1342.31Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111657contigM-pyrifera_M_contig111657:103..408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score78.6
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog160860.XP_007355940.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thioredoxin
EggNOG OGs22E6R@155619,2B2AB@1,2S0CB@2759,39VNM@33154,3H8AI@355688,3NXUU@4751,3V1K0@5204
COG Functional cat.S
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.3193672-CDS-M-pyrifera_M_contig111657:102..4081622815629.3193672-CDS-M-pyrifera_M_contig111657:102..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111657 103..408 +
1692277495.245722-CDS-M-pyrifera_M_contig111657:102..4081692277495.245722-CDS-M-pyrifera_M_contig111657:102..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111657 103..408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111657.2429.1prot_M-pyrifera_M_contig111657.2429.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111657 103..408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111657.2429.1

>prot_M-pyrifera_M_contig111657.2429.1 ID=prot_M-pyrifera_M_contig111657.2429.1|Name=mRNA_M-pyrifera_M_contig111657.2429.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MYRERDRLIDETIVDLSRFAIYDVAATMAEEVGVDKAAVLALLELQPKGG
TKVTAPLKRYVKHHRTFSIHVTPTAVVNDLIANDVSSSWGADEWRDFLAP
LV
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mRNA from alignment at M-pyrifera_M_contig111657:103..408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111657.2429.1 ID=mRNA_M-pyrifera_M_contig111657.2429.1|Name=mRNA_M-pyrifera_M_contig111657.2429.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig111657:103..408+ (Macrocystis pyrifera P11B4 male)
ATGTATCGTGAGCGTGATCGTTTGATCGACGAGACGATCGTGGATTTGAG
TCGATTTGCGATTTACGACGTTGCTGCCACGATGGCGGAGGAGGTTGGGG
TGGACAAGGCAGCGGTGCTGGCTCTATTGGAGCTGCAGCCGAAAGGGGGC
ACCAAGGTGACCGCCCCTCTGAAGCGGTACGTGAAACACCACCGCACCTT
CTCCATCCACGTCACCCCAACCGCTGTCGTCAATGATCTCATCGCCAACG
ACGTCTCCTCCTCCTGGGGAGCAGATGAATGGAGGGACTTCCTCGCACCC
CTCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111657:103..408+

>mRNA_M-pyrifera_M_contig111657.2429.1 ID=mRNA_M-pyrifera_M_contig111657.2429.1|Name=mRNA_M-pyrifera_M_contig111657.2429.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig111657:103..408+ (Macrocystis pyrifera P11B4 male)
ATGTATCGTGAGCGTGATCGTTTGATCGACGAGACGATCGTGGATTTGAG
TCGATTTGCGATTTACGACGTTGCTGCCACGATGGCGGAGGAGGTTGGGG
TGGACAAGGCAGCGGTGCTGGCTCTATTGGAGCTGCAGCCGAAAGGGGGC
ACCAAGGTGACCGCCCCTCTGAAGCGGTACGTGAAACACCACCGCACCTT
CTCCATCCACGTCACCCCAACCGCTGTCGTCAATGATCTCATCGCCAACG
ACGTCTCCTCCTCCTGGGGAGCAGATGAATGGAGGGACTTCCTCGCACCC
CTCGTCATGTATCGTGAGCGTGATCGTTTGATCGACGAGACGATCGTGGA
TTTGAGTCGATTTGCGATTTACGACGTTGCTGCCACGATGGCGGAGGAGG
TTGGGGTGGACAAGGCAGCGGTGCTGGCTCTATTGGAGCTGCAGCCGAAA
GGGGGCACCAAGGTGACCGCCCCTCTGAAGCGGTACGTGAAACACCACCG
CACCTTCTCCATCCACGTCACCCCAACCGCTGTCGTCAATGATCTCATCG
CCAACGACGTCTCCTCCTCCTGGGGAGCAGATGAATGGAGGGACTTCCTC
GCACCCCTCGTC
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