mRNA_M-pyrifera_M_contig111643.2426.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111643.2426.1
Unique NamemRNA_M-pyrifera_M_contig111643.2426.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Match: D3BNW5_POLPP (dCTP deaminase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BNW5_POLPP)

HSP 1 Score: 118 bits (296), Expect = 6.440e-31
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   34 THSLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLGPFFFREGVPQPGQGIYNPYSKRMVQKVWGEPHEAGLAGDWMDEQECSLENI 303
            + SLLSDKAIL++M  G +VI PF R+NLSTSSYDVTLGP+F+RE VP+PGQGIYNPYS+ MV+KVWGE   A    DW       LENI
Sbjct:   11 SQSLLSDKAILKHMEKGTVVISPFIRENLSTSSYDVTLGPYFYREKVPEPGQGIYNPYSESMVKKVWGEYQVAEKVKDWSLRSGQKLENI 100          
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Match: A0A7S4IAR7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IAR7_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.230e-29
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   37 HSLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLGPFFFREGVPQPGQGIYNPYSKRMVQKVWGEPHEAGLAGDWMDEQE-CSLENIS 306
            +SLLSDKAIL+NM  G +VI+PF R+NLSTSSYDVTLG ++FRE +P+PGQGIYNP+S+ MV +VWG+  EA    +W        LENIS
Sbjct:    5 YSLLSDKAILRNMEEGNVVIDPFTRENLSTSSYDVTLGQYYFRESMPEPGQGIYNPFSEEMVGRVWGKLQEAETISEWYKRTGGLKLENIS 95          
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Match: A0A7S4PP53_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PP53_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 6.670e-29
Identity = 52/99 (52.53%), Postives = 70/99 (70.71%), Query Frame = 1
Query:   10 TGDQENALTHSLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLGPFFFREGVPQPGQGIYNPYSKRMVQKVWGEPHEAGLAGDWMDEQECSLENIS 306
            TG+ E     SLLSDK IL++M  G ++IEPF  ++LSTSSYDVTLGP+++RE  P+PGQGIYNP+S+  V+KVWG+  +A    DW    E  L+ I+
Sbjct:    3 TGESELPPRTSLLSDKGILRHMKQGTIIIEPFNNEHLSTSSYDVTLGPYYYRESRPEPGQGIYNPFSEAHVKKVWGDVLKAEKVSDWCKRNETKLDGIN 101          
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Match: F0ZA78_DICPU (dUTPase domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZA78_DICPU)

HSP 1 Score: 112 bits (280), Expect = 1.420e-28
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   16 DQENALTHSLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLGPFFFREGVPQPGQGIYNPYSKRMVQKVWGEPHEAGLAGDWMDEQECSLENIS 306
            D  N +  SLLSDKAIL+++  G +VI PFQR+ LSTSSYDVTLGP++FRE  P+ G GIYNPYS+ MV++VWG    A    +W       LENIS
Sbjct:    2 DTNNTIEKSLLSDKAILKHIDKGTIVISPFQREFLSTSSYDVTLGPYYFRETEPEAGAGIYNPYSENMVKRVWGTYKMAEKVSEWSKRSGVKLENIS 98          
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Match: A0A8J4V507_9MYCE (dUTPase domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V507_9MYCE)

HSP 1 Score: 111 bits (278), Expect = 2.530e-28
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   40 SLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLGPFFFREGVPQPGQGIYNPYSKRMVQKVWGEPHEAGLAGDWMDEQECSLENI 303
            SLLSDKAIL+++    +VI PF RQNLSTSSYDVTLGP+++RE  P+P   +YNPYS+ MV+K+WGE H+A L  DW +     LENI
Sbjct:    5 SLLSDKAILRHIEKKTIVISPFFRQNLSTSSYDVTLGPYYYREVEPEPCHSLYNPYSESMVKKIWGEYHQAELVKDWSNRTGMKLENI 92          
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Match: UPI000644A48D (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A48D)

HSP 1 Score: 109 bits (273), Expect = 1.290e-27
Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 1
Query:   31 LTHSLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLGPFFFREGVPQPGQGIYNPYSKRMVQKVWGEPHEAGLAGDWMDEQECSLENI 303
            +  SLLSDKAIL +M  G + I PF R+NLSTSSYDVTLGP+++RE +P+ GQGIYNPYS+ MV +VWG+   A  A  W +     LENI
Sbjct:    1 MERSLLSDKAILSHMQKGTITISPFIRENLSTSSYDVTLGPYYYRETLPEAGQGIYNPYSQTMVNRVWGQYQIAEKAKVWSERSGIKLENI 91          
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Match: A0A0H5R713_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R713_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 2.170e-27
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   10 TGDQENALTHSLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLGPFFFREGVPQPGQGIYNPYSKRMVQKVWGEPH--EAGLAGDWMDEQECSLENI 303
            T D    +  SLLSD AIL ++ AG +VIEPF  +NLSTSSYDVTLGPFFFRE  P+PG GI+NPYS+ MV++VWG  H   A  A  +M   +  LENI
Sbjct:   46 TNDGSINVEKSLLSDLAILNHIDAGTVVIEPFLMENLSTSSYDVTLGPFFFRESTPEPGDGIFNPYSESMVRQVWGADHLQTAETAEKYMARTKTKLENI 145          
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Match: A0A3P3YED1_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YED1_PLABS)

HSP 1 Score: 109 bits (273), Expect = 9.570e-27
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   16 DQENALTHSLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLGPFFFREGVPQPGQGIYNPYSKRMVQKVWG--EPHEAGLAGDWMDEQECSLENI 303
            D++     SLLSD A++++M+ G +VIEPF  +NLSTSSYDVTLG ++FRE  P+PG GI+NPYS+ MV++VWG  +   A  AG WMD     LEN+
Sbjct:   89 DKDVVAPQSLLSDAALMEHMARGTVVIEPFIPENLSTSSYDVTLGEYYFREATPEPGDGIFNPYSEAMVRRVWGANDLQRAERAGLWMDRTNLKLENV 186          
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Match: A0A6A7G3R7_9CRUS (dCTP deaminase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G3R7_9CRUS)

HSP 1 Score: 105 bits (263), Expect = 6.620e-26
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   40 SLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLGPFFFREGVPQPGQGIYNPYSKRMVQKVWGEPHEAGLAGDWMDEQECSLENI 303
            SLLSDKAIL +M  G +VIEPF  +NLSTSSYDV LG  ++RE  P PG G+YNPYS++MV++VWG  + A  A  WM E    L+NI
Sbjct:   23 SLLSDKAILHHMKEGSVVIEPFNAENLSTSSYDVCLGKHYYRESPPIPGCGVYNPYSEKMVKRVWGTLYTAEPASRWMQESGQKLDNI 110          
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Match: Q55FA6_DICDI (dCTP deaminase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55FA6_DICDI)

HSP 1 Score: 104 bits (259), Expect = 2.400e-25
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 1
Query:   40 SLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLGPFFFREGVPQPGQGIYNPYSKRMVQKVWGEPHEAGLAGDWMDEQECSLENIS 306
            SLLSDKAIL++M  G +VI PF R NLSTSSYDVTLGP+++RE  P+ G G+YNPYS+ MV +VWG   +A     W       L+NI+
Sbjct:   19 SLLSDKAILRHMEIGTVVITPFVRDNLSTSSYDVTLGPYYYRETEPESGAGVYNPYSEEMVDRVWGSFKKAETHASWSARSGIKLDNIA 107          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111643.2426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D3BNW5_POLPP6.440e-3164.44dCTP deaminase n=1 Tax=Polysphondylium pallidum (s... [more]
A0A7S4IAR7_9EUKA1.230e-2960.44Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4PP53_9EUKA6.670e-2952.53Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
F0ZA78_DICPU1.420e-2855.67dUTPase domain-containing protein n=1 Tax=Dictyost... [more]
A0A8J4V507_9MYCE2.530e-2859.09dUTPase domain-containing protein n=1 Tax=Polyspho... [more]
UPI000644A48D1.290e-2757.14hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0H5R713_9EUKA2.170e-2757.00Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A3P3YED1_PLABS9.570e-2753.06Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A6A7G3R7_9CRUS6.620e-2657.95dCTP deaminase (Fragment) n=1 Tax=Hirondellea giga... [more]
Q55FA6_DICDI2.400e-2555.06dCTP deaminase n=1 Tax=Dictyostelium discoideum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111643contigM-pyrifera_M_contig111643:2..307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue3.2e-23
Seed eggNOG ortholog5786.XP_003284301.1
KEGG rclassRC00074
KEGG koko:K01494
KEGG ReactionR00568,R02325
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dUTPase
EggNOG OGs2RDXQ@2759,3XCUB@554915,COG0717@1
EC3.5.4.13
COG Functional cat.F
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.1717558-CDS-M-pyrifera_M_contig111643:1..3071622815629.1717558-CDS-M-pyrifera_M_contig111643:1..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111643 2..307 -
1692277495.2069654-CDS-M-pyrifera_M_contig111643:1..3071692277495.2069654-CDS-M-pyrifera_M_contig111643:1..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111643 2..307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111643.2426.1prot_M-pyrifera_M_contig111643.2426.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111643 2..307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111643.2426.1

>prot_M-pyrifera_M_contig111643.2426.1 ID=prot_M-pyrifera_M_contig111643.2426.1|Name=mRNA_M-pyrifera_M_contig111643.2426.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MSCTGDQENALTHSLLSDKAILQNMSAGRLVIEPFQRQNLSTSSYDVTLG
PFFFREGVPQPGQGIYNPYSKRMVQKVWGEPHEAGLAGDWMDEQECSLEN
IS
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mRNA from alignment at M-pyrifera_M_contig111643:2..307-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111643.2426.1 ID=mRNA_M-pyrifera_M_contig111643.2426.1|Name=mRNA_M-pyrifera_M_contig111643.2426.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig111643:2..307- (Macrocystis pyrifera P11B4 male)
ATGTCTTGCACTGGAGACCAGGAAAATGCTCTGACACACAGCCTGTTGAG TGACAAGGCAATCTTGCAGAATATGAGCGCGGGTAGGCTGGTGATTGAGC CTTTCCAGCGGCAGAACCTGTCAACCAGCAGCTATGATGTGACCCTGGGG CCCTTCTTCTTCCGAGAGGGTGTCCCACAGCCAGGGCAAGGCATCTACAA CCCCTACAGCAAGCGCATGGTGCAGAAGGTGTGGGGCGAGCCGCACGAGG CCGGCCTCGCCGGCGATTGGATGGACGAACAGGAGTGCTCGCTCGAGAAC ATCTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111643:2..307-

>mRNA_M-pyrifera_M_contig111643.2426.1 ID=mRNA_M-pyrifera_M_contig111643.2426.1|Name=mRNA_M-pyrifera_M_contig111643.2426.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig111643:2..307- (Macrocystis pyrifera P11B4 male)
ATGTCTTGCACTGGAGACCAGGAAAATGCTCTGACACACAGCCTGTTGAG
TGACAAGGCAATCTTGCAGAATATGAGCGCGGGTAGGCTGGTGATTGAGC
CTTTCCAGCGGCAGAACCTGTCAACCAGCAGCTATGATGTGACCCTGGGG
CCCTTCTTCTTCCGAGAGGGTGTCCCACAGCCAGGGCAAGGCATCTACAA
CCCCTACAGCAAGCGCATGGTGCAGAAGGTGTGGGGCGAGCCGCACGAGG
CCGGCCTCGCCGGCGATTGGATGGACGAACAGGAGTGCTCGCTCGAGAAC
ATCTCTATGTCTTGCACTGGAGACCAGGAAAATGCTCTGACACACAGCCT
GTTGAGTGACAAGGCAATCTTGCAGAATATGAGCGCGGGTAGGCTGGTGA
TTGAGCCTTTCCAGCGGCAGAACCTGTCAACCAGCAGCTATGATGTGACC
CTGGGGCCCTTCTTCTTCCGAGAGGGTGTCCCACAGCCAGGGCAAGGCAT
CTACAACCCCTACAGCAAGCGCATGGTGCAGAAGGTGTGGGGCGAGCCGC
ACGAGGCCGGCCTCGCCGGCGATTGGATGGACGAACAGGAGTGCTCGCTC
GAGAACATCTCT
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