mRNA_M-pyrifera_M_contig111638.2423.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111638.2423.1
Unique NamemRNA_M-pyrifera_M_contig111638.2423.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111638.2423.1 vs. uniprot
Match: F1KUB8_ASCSU (Breast carcinoma-amplified sequence 3 n=1 Tax=Ascaris suum TaxID=6253 RepID=F1KUB8_ASCSU)

HSP 1 Score: 53.1 bits (126), Expect = 1.640e-5
Identity = 35/130 (26.92%), Postives = 59/130 (45.38%), Query Frame = 1 
Query:    7 VLVVNDAGILTHFQLAPEPTKLPNGGYGKEL--VVHSKRRLEWDV---CRKK---TWPTTTVPMEVAFRRDLARSGDCVL---GQAPAEETAEFLPSLHETRWLTQLEMATYGDDFKPLYSIPKFHFKKF 363
            +LVV D G+LT + L   P ++P+         V  +  RL W+    C+ +   +W        +  R  +A S   ++        EE    L      +W+TQ+E+ TYG+  + L++ P+F FK F
Sbjct:  635 LLVVGDDGVLTEYSLEVTPAQIPHPAAASPATAVTGAHPRLTWESPIQCQLRANASWQLQRCKSSLDVRAPVAESNPLLVWLNASNKIEECKMNLEGERNEKWITQIEVLTYGEPHRRLWTGPQFTFKTF 764
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111638.2423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F1KUB8_ASCSU1.640e-526.92Breast carcinoma-amplified sequence 3 n=1 Tax=Asca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111638contigM-pyrifera_M_contig111638:69..458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.9963894-CDS-M-pyrifera_M_contig111638:68..4581622815628.9963894-CDS-M-pyrifera_M_contig111638:68..458Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111638 69..458 +
1692277495.1617482-CDS-M-pyrifera_M_contig111638:68..4581692277495.1617482-CDS-M-pyrifera_M_contig111638:68..458Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111638 69..458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111638.2423.1prot_M-pyrifera_M_contig111638.2423.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111638 69..458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111638.2423.1

>prot_M-pyrifera_M_contig111638.2423.1 ID=prot_M-pyrifera_M_contig111638.2423.1|Name=mRNA_M-pyrifera_M_contig111638.2423.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
NGVLVVNDAGILTHFQLAPEPTKLPNGGYGKELVVHSKRRLEWDVCRKKT
WPTTTVPMEVAFRRDLARSGDCVLGQAPAEETAEFLPSLHETRWLTQLEM
ATYGDDFKPLYSIPKFHFKKFQPDTDPAAD
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mRNA from alignment at M-pyrifera_M_contig111638:69..458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111638.2423.1 ID=mRNA_M-pyrifera_M_contig111638.2423.1|Name=mRNA_M-pyrifera_M_contig111638.2423.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig111638:69..458+ (Macrocystis pyrifera P11B4 male)
AATGGTGTCTTGGTCGTGAACGACGCTGGCATTCTCACACACTTCCAGCT
TGCGCCCGAGCCAACAAAGCTGCCTAACGGTGGCTACGGCAAGGAGTTGG
TCGTCCACAGCAAGCGTCGCCTCGAATGGGACGTGTGCAGGAAGAAGACC
TGGCCTACCACCACAGTGCCCATGGAGGTGGCGTTCAGGCGCGACCTGGC
ACGCAGCGGGGACTGCGTGCTCGGGCAGGCCCCTGCAGAGGAGACTGCAG
AATTCCTGCCCTCCCTGCATGAGACCAGATGGCTCACCCAGTTGGAGATG
GCAACGTACGGTGATGACTTCAAGCCGCTGTATTCCATTCCCAAGTTCCA
CTTCAAGAAGTTTCAGCCTGACACAGACCCTGCTGCTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111638:69..458+

>mRNA_M-pyrifera_M_contig111638.2423.1 ID=mRNA_M-pyrifera_M_contig111638.2423.1|Name=mRNA_M-pyrifera_M_contig111638.2423.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig111638:69..458+ (Macrocystis pyrifera P11B4 male)
AATGGTGTCTTGGTCGTGAACGACGCTGGCATTCTCACACACTTCCAGCT
TGCGCCCGAGCCAACAAAGCTGCCTAACGGTGGCTACGGCAAGGAGTTGG
TCGTCCACAGCAAGCGTCGCCTCGAATGGGACGTGTGCAGGAAGAAGACC
TGGCCTACCACCACAGTGCCCATGGAGGTGGCGTTCAGGCGCGACCTGGC
ACGCAGCGGGGACTGCGTGCTCGGGCAGGCCCCTGCAGAGGAGACTGCAG
AATTCCTGCCCTCCCTGCATGAGACCAGATGGCTCACCCAGTTGGAGATG
GCAACGTACGGTGATGACTTCAAGCCGCTGTATTCCATTCCCAAGTTCCA
CTTCAAGAAGTTTCAGCCTGACACAGACCCTGCTGCTGATAATGGTGTCT
TGGTCGTGAACGACGCTGGCATTCTCACACACTTCCAGCTTGCGCCCGAG
CCAACAAAGCTGCCTAACGGTGGCTACGGCAAGGAGTTGGTCGTCCACAG
CAAGCGTCGCCTCGAATGGGACGTGTGCAGGAAGAAGACCTGGCCTACCA
CCACAGTGCCCATGGAGGTGGCGTTCAGGCGCGACCTGGCACGCAGCGGG
GACTGCGTGCTCGGGCAGGCCCCTGCAGAGGAGACTGCAGAATTCCTGCC
CTCCCTGCATGAGACCAGATGGCTCACCCAGTTGGAGATGGCAACGTACG
GTGATGACTTCAAGCCGCTGTATTCCATTCCCAAGTTCCACTTCAAGAAG
TTTCAGCCTGACACAGACCCTGCTGCTGAT
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