mRNA_M-pyrifera_M_contig111631.2420.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111631.2420.1
Unique NamemRNA_M-pyrifera_M_contig111631.2420.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Match: A0A7S4MGI3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MGI3_9EUKA)

HSP 1 Score: 183 bits (464), Expect = 5.610e-55
Identity = 101/195 (51.79%), Postives = 139/195 (71.28%), Query Frame = 1
Query:    1 LELAPGHKEKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKIRLDKAWSDSLDQNGVLELVAKYKGQVSRKRYAQAAGDGAQTKKKRKVVVSKAGVTVAGAFQKASTAGVQVESSVFCGKELCVMGGG-VHGKAELERIAHKHGATRVQYPSDSTYCVVTDKITLKVKNLMESGKFDIVKPLWLLEC 582
            +EL P  KEKPDVWI+P  SR+LQVKAAQ+VP+EKF + FTLRFPRVQK+RLDK W D++D    L+ + K+ G+ SR+            KKKRK V ++  +TV   FQ+A T  + + +++F  KE+C++ G   H KA+LERIA +HGA+RVQYP+D+T  VV +K TL+V N++E+G FDIVKP+W+L C
Sbjct:   28 IELMPPCKEKPDVWIDPKNSRILQVKAAQIVPTEKFVTRFTLRFPRVQKLRLDKNWYDAMDSKE-LQQITKH-GRTSRR--ISEIDKEQPPKKKRKTVNTRRSLTVLQQFQQADTKDLSIIAALFQNKEICILSGDDSHSKADLERIAFQHGASRVQYPTDATDIVVAEKKTLRVSNIIETGGFDIVKPIWILTC 218          
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Match: UPI000C6DBC4A (DNA ligase 4-like isoform X1 n=4 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DBC4A)

HSP 1 Score: 152 bits (384), Expect = 3.130e-39
Identity = 88/196 (44.90%), Postives = 126/196 (64.29%), Query Frame = 1
Query:    7 LAPGHKEKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKIRLDKAWSDSLDQNGVLELVAKYKGQVSRKRYAQAAGDGAQ--TKKKRKVVVSKAGVTVAGAFQKASTAGVQVESSVFCGKELCVMGGGV-HGKAELERIAHKHGATRVQYPSDSTYCVVTDKITLKVKNLMESGKFDIVKPLWLLECV 585
            LAPGHKEKPDVWI+P  S VLQVKAA++  S++FK+G +LRFPRV+KIR DK+W+  L  +  LE + K  G     RY     D     + KKRKV+++    TVA  FQ A  + ++V+S +F  KE CV+ G   H K  LE++  ++G    Q P  +T+CV+ DK+TLK KN++   ++++VK  WLL+C+
Sbjct:  531 LAPGHKEKPDVWIKPENSAVLQVKAAEITQSDQFKTGCSLRFPRVEKIRYDKSWNQCLTLSE-LENLRKEGGGKLAGRYCTITTDQNYEISPKKRKVILTSVKPTVAPHFQPADISDIKVKSHMFEEKEFCVINGPPSHSKHTLEKLIAEYGGNITQNPGMNTFCVIVDKVTLKAKNIIAKKQYNVVKVTWLLKCI 725          
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Match: UPI001CF5AFC9 (DNA ligase 4-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF5AFC9)

HSP 1 Score: 152 bits (383), Expect = 4.300e-39
Identity = 84/195 (43.08%), Postives = 130/195 (66.67%), Query Frame = 1
Query:    7 LAPGHKEKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKIRLDKAWSDSLDQNGVLELVAKYKGQVSRKRYAQAAGDGAQTKKKRKVVVSKAGVT-VAGAFQKASTAGVQVESSVFCGKELCVMGGGV-HGKAELERIAHKHGATRVQYPSDSTYCVVTDKITLKVKNLMESGKFDIVKPLWLLECV 585
            LAPG+KEKPDVWIEP+KS+++QVKAA+++ S+KFK+G TLRFPRV+ IR DK W + L    + +L +  +G+++ + +  A       +K+RK V     VT VA  F+ A  + V+  S +F GKE C++ G   H KA+LE+   ++G +  Q PS  TYCV+ ++I ++VKN++   KFD+V+  WL++C+
Sbjct:  543 LAPGYKEKPDVWIEPTKSKIVQVKAAEIIASDKFKTGVTLRFPRVEAIRKDKMWYECLSSTELEKLKSMAEGKLTYQ-HTNAEHSHEPARKRRKGVTRNERVTSVAEHFKPADLSSVEQVSQLFEGKEFCIVTGPASHPKAKLEKKVAENGGSCTQNPSAETYCVIAERINVRVKNIISQKKFDVVQASWLIQCL 736          
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Match: UPI001E1D563F (LOW QUALITY PROTEIN: DNA ligase 4-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D563F)

HSP 1 Score: 152 bits (383), Expect = 4.300e-39
Identity = 86/196 (43.88%), Postives = 123/196 (62.76%), Query Frame = 1
Query:    1 LELAPGHKEKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKIRLDKAWSDSLDQNGVLELVAKYKGQVSRKRYAQAAGDGAQTKKKRKVVVSKAGVTVAGAFQKASTAGVQVESSVFCGKELCVMGGGVH-GKAELERIAHKHGATRVQYPSDSTYCVVTDKITLKVKNLMESGKFDIVKPLWLLECV 585
            +ELA G KEKPD WIEPSKS ++Q+KAA+++ S++F++GFTLRFPRV+K R DK W D +    V +L  K  G+++   Y +   +    KKKRK+V      T+   F+ A T+ VQ  S +  G+E+CV+ G     K ELE+   + G T VQ P   TYCVV +KI  +V N+++S  +DIVK  WL+ C+
Sbjct:  540 IELASGFKEKPDAWIEPSKSAIVQIKAAEIIDSDRFRTGFTLRFPRVEKFRDDKEWYDCMTVEEVEQLKQKSGGKLTGG-YVELGEEQEPAKKKRKIVSRAVRPTLGSQFRAADTSSVQQVSKLLEGREICVINGPSSCSKQELEKKIVECGGTVVQNPGIDTYCVVVEKIVFRVNNMIKSNHYDIVKAEWLIRCL 734          
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Match: A0A6P8J0X6_ACTTE (DNA ligase 4 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J0X6_ACTTE)

HSP 1 Score: 150 bits (378), Expect = 1.940e-38
Identity = 81/197 (41.12%), Postives = 127/197 (64.47%), Query Frame = 1
Query:    1 LELAPGHKEKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKIRLDKAWSDSLDQNGVLELVAKYKGQVSRKRYAQAAGDGAQTKKKRKVVVS-KAGVTVAGAFQKASTAGVQVESSVFCGKELCVMGGGV-HGKAELERIAHKHGATRVQYPSDSTYCVVTDKITLKVKNLMESGKFDIVKPLWLLECV 585
            + LAPG KEKPDVWIEPSKS+++Q+KAA+++ S+++K+G TLRFPR++ IR DK W + LD   + +L    +G+++ + +    G    T+KKR+V    +   TVA  F+ A  + V   S +F GKE C++ G     KA+LE+   +HG T  Q P   TYCV+ +++ L+V N+++  K D+VK  WL++C+
Sbjct:  487 IALAPGFKEKPDVWIEPSKSKIVQIKAAEIIASDRYKTGSTLRFPRLECIRDDKHWYECLDLKELEKLRTMAEGKLTYQ-HTDMDGTSEPTRKKRRVAARVEQPRTVAAHFRPADVSSVTEVSKLFAGKEFCIINGPTSEPKAQLEKKVVEHGGTFTQNPGPETYCVIAERVNLRVNNIIKDAKHDVVKASWLIDCL 682          
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Match: A0A6B2KXJ9_9EUKA (DNA ligase 4 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXJ9_9EUKA)

HSP 1 Score: 150 bits (378), Expect = 1.960e-38
Identity = 78/194 (40.21%), Postives = 126/194 (64.95%), Query Frame = 1
Query:    7 LAPGHKEKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKIRLDKAWSDSLDQNGVLELVAKYKGQVSRKRYAQAAGDGAQTKKKRKVVVSKAGVTVAGAFQKASTAGVQVESSVFCGKELCVMGG-GVHGKAELERIAHKHGATRVQYPSDSTYCVVTDKITLKVKNLMESGKFDIVKPLWLLECV 585
            LA   K+KP++WIEP  S+VL+VKAAQ+V S+K+K+G+TLRFPRV KIR DK +   +  + ++ +   ++G+++++ + +   +  + K+K+K ++ K    VA  F+ A T+ ++VE  +F   E CVM G     K ELE + H++G +  QYP+  TY V+  K TLKVKN+ + G  DI+K  W+L+C+
Sbjct:  473 LADQCKDKPNIWIEPKFSKVLEVKAAQIVTSDKYKAGYTLRFPRVVKIRNDKNYMQCMTMDELVSMSKIFEGRLTKRNFNEKEKNENEVKEKKKRIIPKKLYAVASNFKAADTSNIKVEREIFGQMEFCVMNGDNDFSKEELEILIHQYGGSTTQYPTKDTYAVIAAKETLKVKNIQQKGDIDIIKTKWILDCI 666          
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Match: UPI0006B10C16 (DNA ligase 4-like isoform X1 n=4 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B10C16)

HSP 1 Score: 150 bits (378), Expect = 2.030e-38
Identity = 80/196 (40.82%), Postives = 130/196 (66.33%), Query Frame = 1
Query:    7 LAPGHKEKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKIRLDKAWSDSLDQNGVLELVAKYKGQVSRKRYA-QAAGDGAQTKKKRKVVVSKAGV-TVAGAFQKASTAGVQVESSVFCGKELCVMGG-GVHGKAELERIAHKHGATRVQYPSDSTYCVVTDKITLKVKNLMESGKFDIVKPLWLLECV 585
            LA GHKEKPD+W+EPSKS ++QVKA +++ S++FK+G TLRFPRV+K+R DK W   +  + + +L  + +G+++ +      +G+   + KKR+V      + T+A  FQ A  +GV+  S++F GK++CV+ G   H K  LE++  ++G + VQ P   T+CV+T K+ L+VKN++   ++D+V+  WLL CV
Sbjct:  537 LASGHKEKPDLWVEPSKSYIVQVKATEIIKSDRFKTGCTLRFPRVEKVRYDKPWFQCMTLSELEDLKQQAQGKLAFQHLVGNESGETEPSPKKRRVPQRTDRICTIAPQFQPADVSGVKPVSAIFSGKQMCVVIGLPEHSKQNLEKLIVEYGGSVVQNPDVDTFCVITSKVNLRVKNIISMNRYDVVRAEWLLRCV 732          
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Match: A0A6S7GCV9_PARCT (DNA ligase 4 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GCV9_PARCT)

HSP 1 Score: 146 bits (369), Expect = 5.430e-38
Identity = 81/196 (41.33%), Postives = 129/196 (65.82%), Query Frame = 1
Query:    1 LELAPGHKEKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKIRLDKAWSDSLDQNGVLELVAKYKGQVSRKRYAQAAGDGAQTKKKRKVVVSKAGVTVAGAFQKASTAGVQVESSVFCGKELCVMGGGVH-GKAELERIAHKHGATRVQYPSDSTYCVVTDKITLKVKNLMESGKFDIVKPLWLLECV 585
            +EL  G+KEKPDVWIEPSKS+++Q+KAA++VPS+ +K+G TLRFPR++KIR DK+W + LD N +  L +  KG++S + +   + + A  K+KR V   +  +TVA  F  A  + V+ +S +F GKE  ++ G    GK ++E+   ++G + VQ P   T+CV+  K  ++V+N+++    D+V   WLLEC+
Sbjct:  159 IELPHGYKEKPDVWIEPSKSKIVQIKAAEIVPSDNYKAGQTLRFPRLEKIRDDKSWYECLDLNELERLRSIAKGKLSYQ-HTSTSYEPAPKKRKRVVTRVEKPLTVAKHFAAADASTVEKKSKIFEGKEFYIVNGPPECGKVQIEKNVMENGGSIVQNPGKETFCVIAHKANVRVQNIIKQATCDVVHAFWLLECL 353          
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Match: D3B9H0_POLPP (DNA ligase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B9H0_POLPP)

HSP 1 Score: 148 bits (373), Expect = 9.920e-38
Identity = 90/191 (47.12%), Postives = 124/191 (64.92%), Query Frame = 1
Query:   25 EKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKIRLDKAWSDSLDQNGVLELVAKYKGQVSRKRYAQAAGDGAQTKKKRKVVVSKAG--VTVAGAFQKASTAGVQVESSVFCGKELCVMGGG-VHGKAELERIAHKHGATRVQYPSDST-YCVVTDKITLKVKNLMESGKFDIVKPLWLLECV 585
            E+PDV+I+P+ S VLQ+KAAQ+V +EK+K GFTLRFPRV KIR DK WS+ LD+ GV+ L  +Y+G+ ++++      DG  TKK+R     K    + V   F+   T GV  +S +F G E CV+ G   H KA LE +  ++G T+VQYPS  T Y V + K  LK++NL+ SG FDIV   WLL+C+
Sbjct:  656 ERPDVYIDPTASFVLQIKAAQIVITEKYKVGFTLRFPRVVKIRDDKQWSECLDEAGVISLANEYEGRYAKRKIE--IQDGKSTKKRRTSTTKKPKKKIGVLQCFEDTDTTGVVKQSGLFEGLEFCVVKGDRQHSKAMLEIVIVENGGTKVQYPSKKTNYVVSSMKEVLKIQNLISSGSFDIVHFQWLLDCI 844          
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Match: UPI000719A52C (DNA ligase 4-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719A52C)

HSP 1 Score: 147 bits (372), Expect = 1.300e-37
Identity = 76/190 (40.00%), Postives = 124/190 (65.26%), Query Frame = 1
Query:   25 EKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKIRLDKAWSDSLDQNGVLELVAKYKGQVSRKRYAQAAGDGAQTK--KKRKVVVSKAGVTVAGAFQKASTAGVQVESSVFCGKELCVMGGGV-HGKAELERIAHKHGATRVQYPSDSTYCVVTDKITLKVKNLMESGKFDIVKPLWLLECV 585
            EKPD+W+EPS+  ++Q+KA ++  S+K+ +G TLRFPRV+ +R DKAW D +    + EL    +G+++ +  A    D A+    KKR++  ++  ++V   FQ A   G++  S +  G+E+CV+ G   H K  LE++A +HGAT VQ+P + T+CVVTDK+ L+V+N++E   +D+V+  WL+ CV
Sbjct:  546 EKPDLWLEPSQGYIVQIKATEITKSDKYGTGCTLRFPRVEHVRYDKAWYDCMTTTELEELRKNAEGKLASRHVALREDDDAEMPAVKKRRIYKAEQTISVPAQFQPADVTGLKKLSELLQGREICVVNGPPSHSKQTLEKMAVEHGATIVQHPGERTWCVVTDKVNLRVRNMIEHDDYDVVRASWLIRCV 735          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111631.2420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MGI3_9EUKA5.610e-5551.79Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
UPI000C6DBC4A3.130e-3944.90DNA ligase 4-like isoform X1 n=4 Tax=Centruroides ... [more]
UPI001CF5AFC94.300e-3943.08DNA ligase 4-like n=1 Tax=Acropora millepora TaxID... [more]
UPI001E1D563F4.300e-3943.88LOW QUALITY PROTEIN: DNA ligase 4-like n=1 Tax=Mer... [more]
A0A6P8J0X6_ACTTE1.940e-3841.12DNA ligase 4 n=1 Tax=Actinia tenebrosa TaxID=6105 ... [more]
A0A6B2KXJ9_9EUKA1.960e-3840.21DNA ligase 4 n=1 Tax=Arcella intermedia TaxID=1963... [more]
UPI0006B10C162.030e-3840.82DNA ligase 4-like isoform X1 n=4 Tax=Limulus polyp... [more]
A0A6S7GCV9_PARCT5.430e-3841.33DNA ligase 4 n=1 Tax=Paramuricea clavata TaxID=317... [more]
D3B9H0_POLPP9.920e-3847.12DNA ligase n=1 Tax=Polysphondylium pallidum (strai... [more]
UPI000719A52C1.300e-3740.00DNA ligase 4-like n=1 Tax=Priapulus caudatus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111631contigM-pyrifera_M_contig111631:5..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score145.2
Seed ortholog evalue3.2e-32
Seed eggNOG ortholog6087.XP_002166379.2
Preferred nameLIG4
KEGG rclassRC00005
KEGG koko:K10777,ko:K15201
KEGG ReactionR00381
KEGG Pathwayko03450,map03450
Hectar predicted targeting categoryother localisation
GOsGO:0000012,GO:0000166,GO:0000228,GO:0000723,GO:0000726,GO:0000781,GO:0000784,GO:0000793,GO:0001701,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002244,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002320,GO:0002328,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002521,GO:0002562,GO:0002568,GO:0002681,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005958,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006289,GO:0006297,GO:0006302,GO:0006303,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007275,GO:0007399,GO:0007417,GO:0008022,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008284,GO:0009314,GO:0009628,GO:0009790,GO:0009792,GO:0009987,GO:0010165,GO:0010212,GO:0010332,GO:0010638,GO:0010720,GO:0010941,GO:0012501,GO:0016032,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016874,GO:0016886,GO:0017076,GO:0019042,GO:0019043,GO:0019724,GO:0019827,GO:0022008,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030554,GO:0031974,GO:0031981,GO:0032200,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032807,GO:0032991,GO:0033043,GO:0033044,GO:0033077,GO:0033151,GO:0033152,GO:0033153,GO:0033554,GO:0034641,GO:0035019,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042110,GO:0042113,GO:0042127,GO:0042592,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043523,GO:0043524,GO:0044237,GO:0044238,GO:0044260,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045190,GO:0045321,GO:0045595,GO:0045597,GO:0046483,GO:0046649,GO:0048145,GO:0048146,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051102,GO:0051103,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051276,GO:0051402,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060249,GO:0060284,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070419,GO:0070997,GO:0071704,GO:0071840,GO:0075713,GO:0090304,GO:0097159,GO:0097367,GO:0097680,GO:0098687,GO:0098727,GO:0140097,GO:1901214,GO:1901215,GO:1901265,GO:1901360,GO:1901363,GO:1990391,GO:1990904,GO:2000026,GO:2001252
EggNOG free text desc.DNA ligation involved in DNA recombination
EggNOG OGs38C9E@33154,3B9Q2@33208,COG1793@1,KOG0966@2759
EC6.5.1.1
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03400
Exons1
Model size585
Cds size585
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.842652-CDS-M-pyrifera_M_contig111631:4..5891622815628.842652-CDS-M-pyrifera_M_contig111631:4..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111631 5..589 +
1692277495.115469-CDS-M-pyrifera_M_contig111631:4..5891692277495.115469-CDS-M-pyrifera_M_contig111631:4..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111631 5..589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111631.2420.1prot_M-pyrifera_M_contig111631.2420.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111631 5..589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111631.2420.1

>prot_M-pyrifera_M_contig111631.2420.1 ID=prot_M-pyrifera_M_contig111631.2420.1|Name=mRNA_M-pyrifera_M_contig111631.2420.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
LELAPGHKEKPDVWIEPSKSRVLQVKAAQMVPSEKFKSGFTLRFPRVQKI
RLDKAWSDSLDQNGVLELVAKYKGQVSRKRYAQAAGDGAQTKKKRKVVVS
KAGVTVAGAFQKASTAGVQVESSVFCGKELCVMGGGVHGKAELERIAHKH
GATRVQYPSDSTYCVVTDKITLKVKNLMESGKFDIVKPLWLLECV
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mRNA from alignment at M-pyrifera_M_contig111631:5..589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111631.2420.1 ID=mRNA_M-pyrifera_M_contig111631.2420.1|Name=mRNA_M-pyrifera_M_contig111631.2420.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig111631:5..589+ (Macrocystis pyrifera P11B4 male)
CTGGAGTTGGCGCCAGGTCATAAGGAGAAGCCAGACGTCTGGATTGAACC CAGCAAGTCACGGGTTCTTCAGGTGAAGGCCGCCCAGATGGTACCCTCTG AGAAGTTCAAGAGTGGGTTTACGCTGAGGTTTCCTCGCGTGCAAAAGATT CGCCTCGATAAGGCTTGGTCTGACTCACTCGACCAAAATGGAGTACTGGA GCTGGTGGCCAAGTACAAGGGACAGGTATCAAGGAAGAGGTATGCCCAGG CAGCTGGCGACGGTGCGCAGACGAAGAAAAAGAGGAAGGTGGTGGTGAGC AAGGCTGGCGTGACTGTGGCTGGAGCCTTCCAGAAGGCTAGCACAGCTGG TGTGCAGGTGGAGAGCAGCGTCTTCTGTGGCAAGGAGCTCTGTGTGATGG GAGGAGGCGTGCATGGGAAGGCAGAGCTGGAGAGGATTGCCCACAAGCAT GGCGCCACCCGTGTGCAGTATCCCTCTGACTCCACCTATTGCGTCGTCAC CGACAAGATTACACTGAAGGTGAAGAACTTGATGGAGAGCGGGAAATTCG ACATTGTAAAGCCCCTGTGGCTCTTGGAGTGCGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111631:5..589+

>mRNA_M-pyrifera_M_contig111631.2420.1 ID=mRNA_M-pyrifera_M_contig111631.2420.1|Name=mRNA_M-pyrifera_M_contig111631.2420.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig111631:5..589+ (Macrocystis pyrifera P11B4 male)
CTGGAGTTGGCGCCAGGTCATAAGGAGAAGCCAGACGTCTGGATTGAACC
CAGCAAGTCACGGGTTCTTCAGGTGAAGGCCGCCCAGATGGTACCCTCTG
AGAAGTTCAAGAGTGGGTTTACGCTGAGGTTTCCTCGCGTGCAAAAGATT
CGCCTCGATAAGGCTTGGTCTGACTCACTCGACCAAAATGGAGTACTGGA
GCTGGTGGCCAAGTACAAGGGACAGGTATCAAGGAAGAGGTATGCCCAGG
CAGCTGGCGACGGTGCGCAGACGAAGAAAAAGAGGAAGGTGGTGGTGAGC
AAGGCTGGCGTGACTGTGGCTGGAGCCTTCCAGAAGGCTAGCACAGCTGG
TGTGCAGGTGGAGAGCAGCGTCTTCTGTGGCAAGGAGCTCTGTGTGATGG
GAGGAGGCGTGCATGGGAAGGCAGAGCTGGAGAGGATTGCCCACAAGCAT
GGCGCCACCCGTGTGCAGTATCCCTCTGACTCCACCTATTGCGTCGTCAC
CGACAAGATTACACTGAAGGTGAAGAACTTGATGGAGAGCGGGAAATTCG
ACATTGTAAAGCCCCTGTGGCTCTTGGAGTGCGTTCTGGAGTTGGCGCCA
GGTCATAAGGAGAAGCCAGACGTCTGGATTGAACCCAGCAAGTCACGGGT
TCTTCAGGTGAAGGCCGCCCAGATGGTACCCTCTGAGAAGTTCAAGAGTG
GGTTTACGCTGAGGTTTCCTCGCGTGCAAAAGATTCGCCTCGATAAGGCT
TGGTCTGACTCACTCGACCAAAATGGAGTACTGGAGCTGGTGGCCAAGTA
CAAGGGACAGGTATCAAGGAAGAGGTATGCCCAGGCAGCTGGCGACGGTG
CGCAGACGAAGAAAAAGAGGAAGGTGGTGGTGAGCAAGGCTGGCGTGACT
GTGGCTGGAGCCTTCCAGAAGGCTAGCACAGCTGGTGTGCAGGTGGAGAG
CAGCGTCTTCTGTGGCAAGGAGCTCTGTGTGATGGGAGGAGGCGTGCATG
GGAAGGCAGAGCTGGAGAGGATTGCCCACAAGCATGGCGCCACCCGTGTG
CAGTATCCCTCTGACTCCACCTATTGCGTCGTCACCGACAAGATTACACT
GAAGGTGAAGAACTTGATGGAGAGCGGGAAATTCGACATTGTAAAGCCCC
TGTGGCTCTTGGAGTGCGTT
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