mRNA_M-pyrifera_M_contig111617.2414.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111617.2414.1
Unique NamemRNA_M-pyrifera_M_contig111617.2414.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Match: A0A7Y2DL58_9ACTN (DEAD/DEAH box helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DL58_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 6.240e-18
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 EQLSLFSVLSSTVVDVGHGEDIFDDSTDDGXXXXXXXXXXXXPEQAELFIDLQRLPPPGPG----PLVLVSRKDRERLREQNAEIVKELVAITGKTHAIVNSELNRMSGVEKVSTATAVQLSKRAKAGQ 375
            EQ+SLF+V S+T+ D  H  D+ +    +              +   L +DLQ LPP  P     P V   RK+RERLR  NA  V++LV  TG +HA VN+ELNR+SGV++VSTATAV+L +RA A +
Sbjct:  405 EQMSLFAVHSATLTDATHEGDVEEALQSELVEDCLPGDDQPLHDAPGLVLDLQALPPVDPSTRARPTVPGGRKERERLRRINAVWVRDLVLATGLSHAQVNAELNRLSGVKRVSTATAVELERRAAAAK 533          
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Match: A0A7Y2IGC2_9ACTN (DEAD/DEAH box helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IGC2_9ACTN)

HSP 1 Score: 82.8 bits (203), Expect = 6.690e-16
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    1 EQLSLFSVLSSTVVDVGHGEDIFD------DSTDDGXXXXXXXXXXXXPEQAELFIDLQRLPPPGPG----PLVLVSRKDRERLREQNAEIVKELVAITGKTHAIVNSELNRMSGVEKVSTATAVQLSKRAKAGQ 375
            EQ+SLF+V S+   D  H +++        +  D               +  +LF+DL RLPP        P V   RKDRERLR  N   V++LV +TG THA VN+ELNR+SGV +V+ ATAV+L +R+   Q
Sbjct:  408 EQMSLFAVHSARPTDADHEDEVASALRSELEEADLPGVEGDDESAEPVVDHPDLFLDLTRLPPVDSSERVRPSVRGGRKDRERLRSMNNRWVRDLVGVTGLTHAQVNAELNRLSGVRRVAQATAVELQRRSDEAQ 542          
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Match: UPI001C62FA84 (DEAD/DEAH box helicase n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62FA84)

HSP 1 Score: 71.2 bits (173), Expect = 7.380e-12
Identity = 53/136 (38.97%), Postives = 72/136 (52.94%), Query Frame = 1
Query:    1 EQLSLFSVLSSTVVDV-GHGEDIFDDSTDDGXXXXXXXXXXXXPEQAELFIDLQRLPPP----GPGPL-------VLVSRKDRERLREQNAEIVKELVAITGKTHAIVNSELNRMSGVEKVSTATAVQLSKRAKAG 372
            EQ+SLF+V+S+   D  GH     DD  DD XX                  +L+  PPP    G GP+        L  ++D++RLR+ NAE+ ++LV  TG THA VN ELNR+SG+ +V+ AT  QL  R   G
Sbjct:  413 EQMSLFAVISAVATDADGHEPAADDDGYDDXXXEGPG-------------FELELAPPPPLAGGVGPVGVGADGAPLTRKEDKKRLRDLNAELARDLVRTTGMTHAQVNRELNRISGITRVTEATVAQLRTRLDKG 535          
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Match: A0A7X7HRK7_9ACTN (DEAD/DEAH box helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HRK7_9ACTN)

HSP 1 Score: 70.5 bits (171), Expect = 1.370e-11
Identity = 54/142 (38.03%), Postives = 70/142 (49.30%), Query Frame = 1
Query:    1 EQLSLFSVLSSTVVDVGHGEDIF---DDSTDDGXXXXXXXXXXXXPEQAELFIDLQRLPPPGP------------GPLVLVSRKDRERLREQNAEIVKELVAITGKTHAIVNSELNRMSGVEKVSTATAVQLSKRAKAGQDL 381
            EQLSLF+ LS+   D       F   DD  DDG             +   L  DL   PP G             G      R+++ RLREQN+EIV  LV  TG+THA VN+ELNR+SG+ +++ AT  QL KR +  + L
Sbjct:  410 EQLSLFAALSAVATDHETQAPPFSSADDVDDDGDPALI--------DDPALVFDLAPPPPLGDRRGLDEMGIELGGLAARTRREEKRRLREQNSEIVATLVRRTGQTHAQVNAELNRLSGIGRITEATVAQLRKRLEVAERL 543          
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Match: A0A7W1N434_9ACTN (DEAD/DEAH box helicase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1N434_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 1.200e-10
Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 1
Query:    1 EQLSLFSVLSSTVVD-VGHGEDIFDDSTDDGXXXXXXXXXXXXPEQAELFIDLQRLPP--------PGPGPLVLVSRKDRERLREQNAEIVKELVAITGKTHAIVNSELNRMSGVEKVSTATAVQLSKRAKAGQDLLTK 390
            +Q+SLF+ +S+   D  G G+D F D  DD                 E  + L  LPP           G  VL  R+++++LR+  A++ +EL    G THA VN+ELNR+SGV++VS AT  QL +R  A    L K
Sbjct:  410 DQMSLFAAISAVATDPTGLGDDEFLDDEDDVGAD-------------EFELTLAPLPPLAGVADVAAAVGEPVLTRREEKKQLRDATAKVARELARRAGLTHAQVNAELNRLSGVQRVSEATVAQLERRFAAADRWLAK 535          
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Match: A0A6I3BR53_9ACTN (DEAD/DEAH box helicase n=2 Tax=root TaxID=1 RepID=A0A6I3BR53_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 1.200e-10
Identity = 51/143 (35.66%), Postives = 71/143 (49.65%), Query Frame = 1
Query:    1 EQLSLFSVLSSTVVDVGHGEDIFDDSTDDGXXXXXXXXXXXXPEQAELFIDLQRLPPP-------------GPGPLVLVSRKDRERLREQNAEIVKELVAITGKTHAIVNSELNRMSGVEKVSTATAVQLSKRAKAGQDLLTK 390
            EQ+SLF+V+S+         D+  D  D+                  L ++L   PPP             G G   L  R+ +  LR++NA I +ELV  TG THA VN+ELNR+SGV KV+ AT  QL +R +AG+  + K
Sbjct:  414 EQMSLFAVISAVATGADDHADLVYDDLDEPDDLG-----------GSLDVELTLGPPPPLSGDTGALDDAEGGG---LTRREQKLYLRDENAAIARELVRRTGMTHAAVNAELNRLSGVRKVAEATIDQLERRLRAGEKWIVK 542          
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Match: A0A8F4FZB9_9ACTN (DEAD/DEAH box helicase n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FZB9_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 1.440e-9
Identity = 51/141 (36.17%), Postives = 70/141 (49.65%), Query Frame = 1
Query:    1 EQLSLFSVLSSTVVD-VGHGEDIFDDSTDDGXXXXXXXXXXXXPEQAELFIDLQRLPPPGP-------------GPLVLVSRKDRERLREQNAEIVKELVAITGKTHAIVNSELNRMSGVEKVSTATAVQLSKRAKAGQDL 381
            EQLSLF+ LS+   +   H     DD  DD              +   L +DL   PP                G      R++++RLREQN+E+V  LV  TG+THA VN+ELNR+SGV +++ AT  QL KR +  + L
Sbjct:  411 EQLSLFAALSAVATEHETHNSWDADDVDDD--------FELTLDDDPTLVLDLAPPPPLAGDRRSLDELGVAFGGDAARTRREEKKRLREQNSELVILLVRRTGQTHAQVNAELNRLSGVGRITEATVAQLRKRLEVAERL 543          
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Match: A0A6N2DEF0_9ACTN (DEAD/DEAH box helicase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DEF0_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 3.670e-9
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    1 EQLSLFSVLSSTVVDVG-HGEDIFDDSTDDGXXXXXXXXXXXXPE--------------QAELFIDLQRLPPP-GPGPLVLVSRKDR-ERLREQNAEIVKELVAITGKTHAIVNSELNRMSGVEKVSTATAVQLSKR 360
            EQLSLFSVLSST   +  HG  I +   D              P+                +L IDL  +P P G  P   +S  +R + LR +NA++ K LV +TG THA V +E+NR++G+ KV+TAT  QL +R
Sbjct:  430 EQLSLFSVLSSTATGLRMHG--ITETGIDHAAENELELLRPPVPDYDDEPDVPEPVFAADPQLAIDLPSVPTPAGAVPTSSLSVAERKDDLRTRNADVAKRLVDLTGWTHARVQAEMNRLAGIAKVATATTDQLERR 564          
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Match: A0A662DMS0_9ACTN (ATP-dependent helicase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662DMS0_9ACTN)

HSP 1 Score: 62.0 bits (149), Expect = 1.260e-8
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    1 EQLSLFSVLSSTVVDVGHGEDIFDDSTDDGXXXXXXXXXXXXPEQAE---LFIDLQRLPPP-GPGPLVLVSRKD-RERLREQNAEIVKELVAITGKTHAIVNSELNRMSGVEKVSTATAVQLSKRAKAGQDLL 384
            EQL+LFSV+SST     H +   DD+  D             PE A    L IDL  +P   G  P+  +S  + ++ LR +NA + K LV +TG TH  V  E+NR++GV +V+TAT  QL +R +  +  L
Sbjct:  418 EQLTLFSVVSSTATAFTHHDHNHDDAVAD-------------PEIAADPGLTIDLPTVPTAAGIQPIGSLSVAEIKDDLRTRNAHVAKRLVDMTGWTHGKVQGEMNRLAGVTRVATATTDQLERRLRYSESWL 537          
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Match: A0A346XSE9_9ACTN (Putative RNA helicase n=2 Tax=Euzebya TaxID=908623 RepID=A0A346XSE9_9ACTN)

HSP 1 Score: 60.5 bits (145), Expect = 4.320e-8
Identity = 45/140 (32.14%), Postives = 68/140 (48.57%), Query Frame = 1
Query:    1 EQLSLFSVLSSTVVDVGHGEDIFDDSTDDGXXXXXXXXXXXXPEQAELFIDLQRLPPPGPGPLVLVSRKD----------RERLREQNAEIVKELVAITGKTHAIVNSELNRMSGVEKVSTATAVQLSKRAKAGQDLLTK 390
            EQ+SLF  +++T  D G  E+                     P   +  + L   PPP PG  V    +D          +  LR++NA++V+ LV      H  VN ELNR+SG++++S ATA QL +R +AG+  LT+
Sbjct:  405 EQISLFQAVAATASDNGSSEE------------PEWFTADPFPAADQEGVPLTLFPPPTPGGKVPQVGEDGLPIQAMHVTKATLRKRNADLVRLLVRRANMDHKAVNLELNRLSGIKRISDATADQLEQRLEAGEKWLTR 532          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111617.2414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A7Y2DL58_9ACTN6.240e-1844.19DEAD/DEAH box helicase n=1 Tax=Acidimicrobiales ba... [more]
A0A7Y2IGC2_9ACTN6.690e-1640.00DEAD/DEAH box helicase n=1 Tax=Acidimicrobiales ba... [more]
UPI001C62FA847.380e-1238.97DEAD/DEAH box helicase n=1 Tax=Iamia sp. SCSIO 611... [more]
A0A7X7HRK7_9ACTN1.370e-1138.03DEAD/DEAH box helicase n=1 Tax=Acidimicrobiales ba... [more]
A0A7W1N434_9ACTN1.200e-1035.97DEAD/DEAH box helicase n=1 Tax=Actinomycetia bacte... [more]
A0A6I3BR53_9ACTN1.200e-1035.66DEAD/DEAH box helicase n=2 Tax=root TaxID=1 RepID=... [more]
A0A8F4FZB9_9ACTN1.440e-936.17DEAD/DEAH box helicase n=1 Tax=Aquihabitans sp. G1... [more]
A0A6N2DEF0_9ACTN3.670e-937.96DEAD/DEAH box helicase n=1 Tax=Ilumatobacter sp. T... [more]
A0A662DMS0_9ACTN1.260e-837.59ATP-dependent helicase n=1 Tax=Actinomycetia bacte... [more]
A0A346XSE9_9ACTN4.320e-832.14Putative RNA helicase n=2 Tax=Euzebya TaxID=908623... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111617contigM-pyrifera_M_contig111617:200..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.6164305-CDS-M-pyrifera_M_contig111617:199..5891622815628.6164305-CDS-M-pyrifera_M_contig111617:199..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111617 200..589 -
1692277495.0271463-CDS-M-pyrifera_M_contig111617:199..5891692277495.0271463-CDS-M-pyrifera_M_contig111617:199..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111617 200..589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111617.2414.1prot_M-pyrifera_M_contig111617.2414.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111617 200..589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111617.2414.1

>prot_M-pyrifera_M_contig111617.2414.1 ID=prot_M-pyrifera_M_contig111617.2414.1|Name=mRNA_M-pyrifera_M_contig111617.2414.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
EQLSLFSVLSSTVVDVGHGEDIFDDSTDDGDDEDEPDDAESDPEQAELFI
DLQRLPPPGPGPLVLVSRKDRERLREQNAEIVKELVAITGKTHAIVNSEL
NRMSGVEKVSTATAVQLSKRAKAGQDLLTK
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mRNA from alignment at M-pyrifera_M_contig111617:200..589-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111617.2414.1 ID=mRNA_M-pyrifera_M_contig111617.2414.1|Name=mRNA_M-pyrifera_M_contig111617.2414.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig111617:200..589- (Macrocystis pyrifera P11B4 male)
GAACAGCTGTCACTGTTCTCGGTGCTGTCCTCCACCGTCGTCGACGTCGG CCACGGTGAAGACATCTTCGACGACAGCACCGACGACGGTGACGACGAAG ACGAGCCCGACGACGCCGAGAGCGATCCGGAACAAGCCGAGCTCTTCATC GACCTCCAGCGGCTCCCGCCGCCGGGCCCCGGTCCGCTCGTGTTGGTCTC ACGCAAAGACCGCGAACGGCTGCGCGAACAGAACGCCGAGATCGTCAAGG AGCTGGTGGCGATCACCGGCAAGACCCACGCGATCGTGAACTCCGAGCTG AACCGGATGTCGGGCGTCGAGAAGGTCTCCACCGCCACGGCGGTGCAGCT CTCCAAGCGAGCCAAGGCCGGTCAGGATCTGCTCACCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111617:200..589-

>mRNA_M-pyrifera_M_contig111617.2414.1 ID=mRNA_M-pyrifera_M_contig111617.2414.1|Name=mRNA_M-pyrifera_M_contig111617.2414.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig111617:200..589- (Macrocystis pyrifera P11B4 male)
GAACAGCTGTCACTGTTCTCGGTGCTGTCCTCCACCGTCGTCGACGTCGG
CCACGGTGAAGACATCTTCGACGACAGCACCGACGACGGTGACGACGAAG
ACGAGCCCGACGACGCCGAGAGCGATCCGGAACAAGCCGAGCTCTTCATC
GACCTCCAGCGGCTCCCGCCGCCGGGCCCCGGTCCGCTCGTGTTGGTCTC
ACGCAAAGACCGCGAACGGCTGCGCGAACAGAACGCCGAGATCGTCAAGG
AGCTGGTGGCGATCACCGGCAAGACCCACGCGATCGTGAACTCCGAGCTG
AACCGGATGTCGGGCGTCGAGAAGGTCTCCACCGCCACGGCGGTGCAGCT
CTCCAAGCGAGCCAAGGCCGGTCAGGATCTGCTCACCAAGGAACAGCTGT
CACTGTTCTCGGTGCTGTCCTCCACCGTCGTCGACGTCGGCCACGGTGAA
GACATCTTCGACGACAGCACCGACGACGGTGACGACGAAGACGAGCCCGA
CGACGCCGAGAGCGATCCGGAACAAGCCGAGCTCTTCATCGACCTCCAGC
GGCTCCCGCCGCCGGGCCCCGGTCCGCTCGTGTTGGTCTCACGCAAAGAC
CGCGAACGGCTGCGCGAACAGAACGCCGAGATCGTCAAGGAGCTGGTGGC
GATCACCGGCAAGACCCACGCGATCGTGAACTCCGAGCTGAACCGGATGT
CGGGCGTCGAGAAGGTCTCCACCGCCACGGCGGTGCAGCTCTCCAAGCGA
GCCAAGGCCGGTCAGGATCTGCTCACCAAG
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