mRNA_M-pyrifera_M_contig11161.2411.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI) HSP 1 Score: 360 bits (923), Expect = 5.090e-114 Identity = 221/338 (65.38%), Postives = 239/338 (70.71%), Query Frame = 1
Query: 1 LVSVIREEIVEEQRGRHGLSQVR--------VGGGVEGEAGAQGEAAIETVLMKLVQDSQERLIYMATKVIQDDIAGFRPAPEHLDYPRMLLQARGDPRGASSADQALSGPGTQAA-SPPPGA------AYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLAVAACAETMKRAAVAISTGVLNSPKAGAPPPSGGGGAVGE-----------------------AGEGGLDAHLFLIKHLLTLREQLTPFRIQFVRAEHKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTLDSIPTIDEIQVRAFEERGEE-----GMVSLRAQPFASPARVK 885
LVSVIREEIVEEQRGRHGLSQ+ EAAIET+LMKLVQDSQERLIYMATKVIQDDIA FRP PE LDYP MLL+A S A +GPG Q + S PP + AYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQL+VAACAE++K+AAV+IS GV A +PP S GGG G +GEGGLDA LFLIKHLLTLREQLTPF IQFV AE KLNFGSTRMALRKFIRHTPALFRLSSKNALVELT+DSIPTIDE+Q RAFE+ E G+ SLRAQPFA+P RVK
Sbjct: 529 LVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMKLVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAAVSISAGVTAG-SAPSPPVSSGGGGRGAPGGALAGGSVVPRXXXXXXXXXGSGEGGLDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTVDSIPTIDEVQARAFEDTSREDVDGAGLESLRAQPFANPDRVK 865
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Match: A0A835YUG6_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG6_9STRA) HSP 1 Score: 152 bits (385), Expect = 6.200e-38 Identity = 128/358 (35.75%), Postives = 163/358 (45.53%), Query Frame = 1
Query: 1 LVSVIREEIVEEQRGRHGLSQVR-------------------------------------VGGGVEGEA-----GAQGEAAIETVLMKLVQDSQER------------------------LIYMATKVIQDDIAGFRPAPE--HLDYPRMLLQARGDPRGASSADQALSGPGTQAASPPPGAAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLAVAACAETMKRAAVAISTGVLNSPKAGAPPPSGGGGAVGEAGEGGLDAHLFLIKHLLTLREQLTPFRIQFVRAEHKLNFGSTRMALRKFIRHTP--ALFRLSSKNALVELTLDSIPTIDEIQVRA---FEERGEEGMVSLRA 855
++ V+REEIVEE RGRHG Q R + E A + IETVL+KLVQD QER LI++A +VIQ D+A FRP + LDYP +L +A S AAY TWYPP+R L VLSK+YR VDMGVFED+A AET++ A+ G A LD HLFL+KHLLTLREQL PF I F+R + KLNF +T ALR+ + + ALFRLS +N L++ +S+P +DE++V A EE EG +L A
Sbjct: 601 IIGVVREEIVEEHRGRHGERQARRIQTNPEHCTALRVKIYSFSGHMPRNDSRTETHACYLLQPNFESSALRRLESGGSQVPIETVLLKLVQDCQERPMSDNLMFNCVTPFPYVNFNFNLQLIHLAQRVIQRDVAQFRPREDGADLDYPAVLSRA----------------------SAAAIAAYDTWYPPMRVGLLVLSKIYRVVDMGVFEDIA-------AETVRAVTAALVAA----------------GRAVAAHASSLDGHLFLVKHLLTLREQLEPFDISFMRNDRKLNFSTTVSALRRLAQPSSGLALFRLSMQNVLIQTAKNSLPAVDEVEVDARQDMEEALREGCNALVA 913
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Match: W7U7M5_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7M5_9STRA) HSP 1 Score: 143 bits (361), Expect = 5.710e-36 Identity = 99/263 (37.64%), Postives = 137/263 (52.09%), Query Frame = 1
Query: 118 IETVLMKLVQDSQERLIYMATKVIQDDIAGFRPAPEHLDYPRML-----LQARGDPRG-----------------------ASSADQALSGPGTQAASPPPGAAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLAVAACAETMKRAAVAISTGVLNSPKAGAPPPSGGGGAVGEAGEGGLDAHLFLIKHLLTLREQLTPFRIQFVRAEHKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTLDSIPTIDEIQVRAFEE 822
+ VL ++ +D+QERLIY+A +V++ ++ GFRP P L+YP L + RG G A QALS G P Y TW+P L+ TL +LSK+YRAV++ VF+++AQ A+AAC + AA VL K G +DA LFL+KHLL LREQL PF I+F E +L+F STR AL +F LFR+ + NAL+ L L S+PT++E +V +E
Sbjct: 6 LRDVLERIAEDAQERLIYVAERVLRVEVEGFRPTPADLEYPGKLEAYWEAKRRGQEGGSQEXXXXXXXXXXXXXXXXXXXEAEEGMQALSSGGMGKVLP----VYATWFPTLQMTLSLLSKIYRAVELHVFQEMAQQALAACTYSFLAAAK-----VLREQK------------------GDMDADLFLVKHLLILREQLVPFDIEFAAIEKRLDFNSTRGALTRFFVDRHNLFRMGTDNALLSLALGSVPTVNEEEVDTRKE 241
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Match: A0A6H5JQ09_9PHAE (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ09_9PHAE) HSP 1 Score: 126 bits (316), Expect = 6.530e-33 Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 1
Query: 172 MATKVIQDDIAGFRPAPEHLDYPRMLLQARGDPRGASSAD---QALSGPGTQAA-SPPPGA------AYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLAVAACAETMK 474
MATKVIQDDIA FRP PE LDYP MLL+A RG ++D A +G G Q + S PP + AYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQL+VAACAE++K
Sbjct: 1 MATKVIQDDIASFRPTPEDLDYPGMLLRAA---RGGGTSDGLVNARTGAGDQPSPSSPPSSTKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLK 108
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Match: A0A4D9D2E8_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E8_9STRA) HSP 1 Score: 134 bits (336), Expect = 1.980e-31 Identity = 97/269 (36.06%), Postives = 140/269 (52.04%), Query Frame = 1
Query: 118 IETVLMKLVQDSQERLIYMATKVIQDDIAGFRPAPEHLDYPRML-----LQARG--------------------DPRGASSADQ---ALSGPGTQAASPPPGAAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLAVAACAETMKRAAVAISTGVLNSPKAGAPPPSGGGGAVGEAGEGGLDAHLF------LIKHLLTLREQLTPFRIQFVRAEHKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTLDSIPTIDEIQVRAFEE 822
+ VL ++ +D+QERLIY+A +V++ ++ GFRP P L+YP L + RG + +G + A++ ALS G P Y TW+P L+ TL +LSK+YRAV++ VF+++AQ A+AAC + AA VL K G +DA LF +KHLL LREQL PF I+F E +L+F STR AL +F LFR+ + NAL+ L L S+PT++E +V +E
Sbjct: 577 LRDVLERIAEDAQERLIYVAERVLRVEVEGFRPTPADLEYPGKLEAYWEAKRRGQEGGXXXXXXXXXXXXTAGKEGKGGAEAEEGMEALSSGGMGEVLP----VYATWFPTLQMTLSLLSKIYRAVEIHVFQEMAQQALAACTYSFLAAAK-----VLREQK------------------GDMDADLFPGTCLGAVKHLLVLREQLVPFDIEFAAIEKRLDFNSTRGALTRFFVDRHNLFRIGTDNALLSLALGSVPTVNEEEVDTRKE 818
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Match: A0A0P1A602_PLAHL (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A602_PLAHL) HSP 1 Score: 132 bits (333), Expect = 4.330e-31 Identity = 90/257 (35.02%), Postives = 123/257 (47.86%), Query Frame = 1
Query: 121 ETVLMKLVQDSQERLIYMATKVIQDDIAGFRPAPEHLDYPRMLLQARGDPRGASSADQALSGPGTQAASPPPGAAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLAVAACAETMKRAAVAISTGVLNSPKAGAPPPSGGGGAVGEAGEGGLDAHLFLIKHLLTLREQLTPFRIQFVRAEHKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTLDSIPTIDEIQVRAFEERGEE------GMVSLRAQPFASP 873
E V+ +++QD+QERLI K I+D+I GF P PEHL+YP L+ A + GAS Y TWYP L TL LS+ YR V M +FE+LAQ A+ C ++K A+ I+ A G L LFL+KHLLTLREQ+TPF IQF + L+F S+ A+ + + LFR + N ++ L IP I E +E +E G + + A P
Sbjct: 456 EPVMHRMIQDAQERLILCMQKYIRDEIEGFEPCPEHLNYPAKLIAA--EESGAS--------------------LYATWYPSLEHTLMCLSQGYRYVKMEIFEELAQDAIQICTASLKMASADIT-----------------------ATHGRLHGSLFLVKHLLTLREQITPFEIQFAQRSKTLDFTSSADAMNELLGDASTLFRFTGPNGILNLFTRGIPQIQETTADVKKELEQELKKSCTGFIEFVLEQLAQP 667
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Match: A0A2D4BHX3_PYTIN (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHX3_PYTIN) HSP 1 Score: 128 bits (322), Expect = 1.590e-29 Identity = 85/228 (37.28%), Postives = 120/228 (52.63%), Query Frame = 1
Query: 118 IETVLMKLVQDSQERLIYMATKVIQDDIAGFRPAPEHLDYPRMLLQARGDPRGASSADQALSGPGTQAASPPPGAAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLAVAACAETMKRAAVAISTGVLNSPKAGAPPPSGGGGAVGEAGEGGLDAHLFLIKHLLTLREQLTPFRIQFVRAEHKLNFGSTRMALRKFIRHTPALFRLSSK-NALVELTLDSIPTIDE 798
+E V+ +++QD+QERLI K I+D+I GF P+ E LDYP L+ A A+S ++ Y TWYP L TL LSKVY V+M +FE+LAQ A+ C +++ AA ++ A +G + LFL+KHLLTLREQ+TPF I+F L+F S+ A+ + A+F LS + NALV L +S+P I E
Sbjct: 393 VEPVMHRMIQDAQERLILCVQKYIRDEIEGFVPSAEDLDYPNKLIAA------ANSTSISM---------------YATWYPALEHTLLCLSKVYHFVNMEIFEELAQDAIQVCTASLRMAAADLT-----------------------AAKGAVHGSLFLVKHLLTLREQITPFDIKFAVRAKSLDFTSSADAMSHLLSDVTAIFSLSLRDNALVGLVANSLPQIQE 576
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Match: A0A484E4U9_BRELC (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4U9_BRELC) HSP 1 Score: 125 bits (315), Expect = 1.100e-28 Identity = 83/226 (36.73%), Postives = 112/226 (49.56%), Query Frame = 1
Query: 121 ETVLMKLVQDSQERLIYMATKVIQDDIAGFRPAPEHLDYPRMLLQARGDPRGASSADQALSGPGTQAASPPPGAAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLAVAACAETMKRAAVAISTGVLNSPKAGAPPPSGGGGAVGEAGEGGLDAHLFLIKHLLTLREQLTPFRIQFVRAEHKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTLDSIPTIDE 798
E V+++++QD+QERLI K I+D+I GF P+P LDYP L + A + + L Y TWYP L TL LSK Y V + +FE+LAQ A+ CA ++ A+ I+ A G L LFL+KHLLTLREQ+TPF IQF + L+F S+ AL + + LFR S N +V L +P I E
Sbjct: 491 EPVMLRMIQDAQERLILCMQKYIRDEIEGFVPSPSDLDYPTKL-------KAAENVNAPL---------------YATWYPSLEHTLMCLSKGYHYVKVEIFEELAQDAIQICAASLVMASADIT-----------------------ANHGELHGSLFLVKHLLTLREQITPFEIQFAQRSKSLDFTSSADALNELLVDASTLFRFSGLNGIVNLVSRGMPQIQE 671
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Match: A0A8J9S6R1_9CHLO (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S6R1_9CHLO) HSP 1 Score: 125 bits (315), Expect = 1.110e-28 Identity = 95/284 (33.45%), Postives = 138/284 (48.59%), Query Frame = 1
Query: 1 LVSVIREEIVEEQRGRHGLSQVRVGGGVEGEAGAQGEAAIETVLMKLVQDSQERLIYMATKVIQDDIAGFRPAPEHLDYPRMLLQARGDPRGASSADQALS---------GPGTQAASPPPGA-AYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLAVAACAETMKRAAVAISTGVLNSPKAGAPPPSGGGGAVGEAGEGGLDAHLFLIKHLLTLREQLTPFRIQFVRAEHKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTLDSIPTIDEIQVRAFEE 822
LV +++ E++EEQ GR G A + VL++++ D QERL + A I++++ GF+P PE LDYP LL+ DP A+ QA G TQ ++ AY+TWYPP++ TL LSK+YR V+ VF LAQ AV++C ++ AA A+ + +D LFLIK LL LREQ+ PF F E L+F R A +LF LS++NA+V+L P + E + + +E
Sbjct: 454 LVDILQHEVLEEQLGRRG----------------DAVAPLRPVLLRILADVQERLTFRAQAFIKEEVTGFQPKPEDLDYPNKLLRLAEDPESAAPDSQAEQLPLMTDNGHGATTQDSTRESSMNAYSTWYPPVQRTLLCLSKLYRCVEPKVFAGLAQDAVSSCTTAVQLAARAVGRRSSS-----------------------MDGQLFLIKQLLILREQIAPFEADFSVTEKDLDFTHMRQA---------SLFALSAENAMVQLMSRGAPRLMENMIDSKKE 689
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Match: A0A7S2NZS1_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZS1_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.700e-28 Identity = 81/224 (36.16%), Postives = 122/224 (54.46%), Query Frame = 1
Query: 139 LVQDSQERLIYMATKVIQDDIAGFRPAPEHLDYPRMLLQARGDPRGASSADQALSGPGTQAASPPPGAAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLAVAACAETMKRAAVAISTGVLNSPKAGAPPPSGGGGAVGEAGEGGLDAHLFLIKHLLTLREQLTPFRIQFVRAEHKLNFGSTRMALRKFI----RHTPALFRLSSKNALVELTLDSIPTIDE 798
+++D+QERLIY A +Q ++ F+P+ LDYP+ L+ A + +G + QA Y TWYPPL+S L+VLSK+++ VD VFED+A +V ACA+ ++ AA + A +G LD+ LFL+KHLL LREQL+PF I+ E +L+F A+ KF+ RH LF +S++NALV + + + +E
Sbjct: 458 VIEDAQERLIYCAQSTLQKEVMKFKPSAGELDYPKKLISAS-EKKGTADPVQAQM------------MVYETWYPPLKSVLRVLSKIFKVVDQKVFEDIALRSVQACAKCLRDAASYLL-----------------------AKKGSLDSDLFLVKHLLILREQLSPFDIELRAVEKQLDFSEAGKAVTKFLANRNRH---LFTMSNENALVMMLREGVSVQEE 642 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11161.2411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11161.2411.1 >prot_M-pyrifera_M_contig11161.2411.1 ID=prot_M-pyrifera_M_contig11161.2411.1|Name=mRNA_M-pyrifera_M_contig11161.2411.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=295bp LVSVIREEIVEEQRGRHGLSQVRVGGGVEGEAGAQGEAAIETVLMKLVQDback to top mRNA from alignment at M-pyrifera_M_contig11161:1806..9913+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11161.2411.1 ID=mRNA_M-pyrifera_M_contig11161.2411.1|Name=mRNA_M-pyrifera_M_contig11161.2411.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8108bp|location=Sequence derived from alignment at M-pyrifera_M_contig11161:1806..9913+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11161:1806..9913+ >mRNA_M-pyrifera_M_contig11161.2411.1 ID=mRNA_M-pyrifera_M_contig11161.2411.1|Name=mRNA_M-pyrifera_M_contig11161.2411.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1770bp|location=Sequence derived from alignment at M-pyrifera_M_contig11161:1806..9913+ (Macrocystis pyrifera P11B4 male)back to top |