mRNA_M-pyrifera_M_contig11158.2406.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11158.2406.1
Unique NamemRNA_M-pyrifera_M_contig11158.2406.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11158.2406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11158contigM-pyrifera_M_contig11158:2623..2982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size362
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.153654-CDS-M-pyrifera_M_contig11158:2622..29821622815628.153654-CDS-M-pyrifera_M_contig11158:2622..2982Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11158 2623..2982 +
1692277494.7635918-CDS-M-pyrifera_M_contig11158:2622..29821692277494.7635918-CDS-M-pyrifera_M_contig11158:2622..2982Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11158 2623..2982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11158.2406.1prot_M-pyrifera_M_contig11158.2406.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11158 2623..2982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11158.2406.1

>prot_M-pyrifera_M_contig11158.2406.1 ID=prot_M-pyrifera_M_contig11158.2406.1|Name=mRNA_M-pyrifera_M_contig11158.2406.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
SCCSDAGAPVACATTSSPLGTTGSDWVGFSCSWSEEAALRRGDEDVFSCP
ALVRPKHDLIEALLIGCCLLRCTPPTLDKTGPHATEWWHSDTPTNATRAR
VRAAPLETMAPMRDLHDPN*
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mRNA from alignment at M-pyrifera_M_contig11158:2623..2982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11158.2406.1 ID=mRNA_M-pyrifera_M_contig11158.2406.1|Name=mRNA_M-pyrifera_M_contig11158.2406.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig11158:2623..2982+ (Macrocystis pyrifera P11B4 male)
TCCTGCTGTTCCGATGCTGGCGCACCTGTCGCCTGCGCTACCACATCATC
GCCCTTGGGTACCACTGGCTCGGATTGGGTAGGCTTTTCCTGTTCCTGGT
CGGAAGAGGCTGCTTTGAGACGGGGTGATGAAGACGTGTTCAGTTGTCCT
GCGTTGGTCCGGCCGAAACATGACCTAATCGAGGCTTTACTGATCGGTTG
TTGCCTGTTGCGTTGCACACCACCGACACTTGATAAAACCGGACCCCACG
CAACTGAGTGGTGGCACAGCGATACTCCCACTAACGCCACAAGGGCGAGA
GTACGCGCTGCACCTCTTGAGACAATGGCGCCCATGAGAGATCTTCACGA
TCCCAACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11158:2623..2982+

>mRNA_M-pyrifera_M_contig11158.2406.1 ID=mRNA_M-pyrifera_M_contig11158.2406.1|Name=mRNA_M-pyrifera_M_contig11158.2406.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig11158:2623..2982+ (Macrocystis pyrifera P11B4 male)
TCCTGCTGTTCCGATGCTGGCGCACCTGTCGCCTGCGCTACCACATCATC
GCCCTTGGGTACCACTGGCTCGGATTGGGTAGGCTTTTCCTGTTCCTGGT
CGGAAGAGGCTGCTTTGAGACGGGGTGATGAAGACGTGTTCAGTTGTCCT
GCGTTGGTCCGGCCGAAACATGACCTAATCGAGGCTTTACTGATCGGTTG
TTGCCTGTTGCGTTGCACACCACCGACACTTGATAAAACCGGACCCCACG
CAACTGAGTGGTGGCACAGCGATACTCCCACTAACGCCACAAGGGCGAGA
GTACGCGCTGCACCTCTTGAGACAATGGCGCCCATGAGAGATCTTCACGA
TCCCAACTAATCCTGCTGTTCCGATGCTGGCGCACCTGTCGCCTGCGCTA
CCACATCATCGCCCTTGGGTACCACTGGCTCGGATTGGGTAGGCTTTTCC
TGTTCCTGGTCGGAAGAGGCTGCTTTGAGACGGGGTGATGAAGACGTGTT
CAGTTGTCCTGCGTTGGTCCGGCCGAAACATGACCTAATCGAGGCTTTAC
TGATCGGTTGTTGCCTGTTGCGTTGCACACCACCGACACTTGATAAAACC
GGACCCCACGCAACTGAGTGGTGGCACAGCGATACTCCCACTAACGCCAC
AAGGGCGAGAGTACGCGCTGCACCTCTTGAGACAATGGCGCCCATGAGAG
ATCTTCACGATCCCAACTAA
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