mRNA_M-pyrifera_M_contig111557.2404.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111557.2404.1
Unique NamemRNA_M-pyrifera_M_contig111557.2404.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111557.2404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111557contigM-pyrifera_M_contig111557:173..550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.0838919-CDS-M-pyrifera_M_contig111557:172..5501622815628.0838919-CDS-M-pyrifera_M_contig111557:172..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111557 173..550 -
1692277494.741532-CDS-M-pyrifera_M_contig111557:172..5501692277494.741532-CDS-M-pyrifera_M_contig111557:172..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111557 173..550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111557.2404.1prot_M-pyrifera_M_contig111557.2404.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111557 173..550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111557.2404.1

>prot_M-pyrifera_M_contig111557.2404.1 ID=prot_M-pyrifera_M_contig111557.2404.1|Name=mRNA_M-pyrifera_M_contig111557.2404.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
CFRCGRPGHHAAECQAAPAQMNIAFPGAASPQPAEQPYYGGGWLQEAPYG
SDGYTSAGASPPQQPSFSTSPSPGLANNGNPTPTFDPHLLTAQFAHQGKA
NADLFWVNGREEWVADSGATFHVTGN
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mRNA from alignment at M-pyrifera_M_contig111557:173..550-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111557.2404.1 ID=mRNA_M-pyrifera_M_contig111557.2404.1|Name=mRNA_M-pyrifera_M_contig111557.2404.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig111557:173..550- (Macrocystis pyrifera P11B4 male)
TGCTTCCGGTGCGGCAGACCGGGCCACCACGCCGCGGAATGCCAGGCAGC
TCCCGCGCAAATGAATATCGCTTTCCCGGGTGCCGCTTCTCCTCAACCCG
CCGAACAACCATACTACGGAGGTGGCTGGCTGCAGGAGGCGCCCTACGGC
AGTGATGGGTATACCTCGGCCGGAGCTTCCCCGCCACAACAACCCTCCTT
CAGCACTTCCCCCTCCCCTGGCTTAGCGAACAACGGCAACCCTACGCCTA
CGTTCGATCCGCACCTCCTCACCGCGCAGTTTGCGCACCAAGGCAAGGCG
AATGCTGATTTGTTTTGGGTTAATGGGAGAGAAGAGTGGGTAGCGGATTC
GGGAGCAACTTTTCATGTGACTGGCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111557:173..550-

>mRNA_M-pyrifera_M_contig111557.2404.1 ID=mRNA_M-pyrifera_M_contig111557.2404.1|Name=mRNA_M-pyrifera_M_contig111557.2404.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig111557:173..550- (Macrocystis pyrifera P11B4 male)
TGCTTCCGGTGCGGCAGACCGGGCCACCACGCCGCGGAATGCCAGGCAGC
TCCCGCGCAAATGAATATCGCTTTCCCGGGTGCCGCTTCTCCTCAACCCG
CCGAACAACCATACTACGGAGGTGGCTGGCTGCAGGAGGCGCCCTACGGC
AGTGATGGGTATACCTCGGCCGGAGCTTCCCCGCCACAACAACCCTCCTT
CAGCACTTCCCCCTCCCCTGGCTTAGCGAACAACGGCAACCCTACGCCTA
CGTTCGATCCGCACCTCCTCACCGCGCAGTTTGCGCACCAAGGCAAGGCG
AATGCTGATTTGTTTTGGGTTAATGGGAGAGAAGAGTGGGTAGCGGATTC
GGGAGCAACTTTTCATGTGACTGGCAACTGCTTCCGGTGCGGCAGACCGG
GCCACCACGCCGCGGAATGCCAGGCAGCTCCCGCGCAAATGAATATCGCT
TTCCCGGGTGCCGCTTCTCCTCAACCCGCCGAACAACCATACTACGGAGG
TGGCTGGCTGCAGGAGGCGCCCTACGGCAGTGATGGGTATACCTCGGCCG
GAGCTTCCCCGCCACAACAACCCTCCTTCAGCACTTCCCCCTCCCCTGGC
TTAGCGAACAACGGCAACCCTACGCCTACGTTCGATCCGCACCTCCTCAC
CGCGCAGTTTGCGCACCAAGGCAAGGCGAATGCTGATTTGTTTTGGGTTA
ATGGGAGAGAAGAGTGGGTAGCGGATTCGGGAGCAACTTTTCATGTGACT
GGCAAC
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