mRNA_M-pyrifera_M_contig111552.2403.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111552.2403.1
Unique NamemRNA_M-pyrifera_M_contig111552.2403.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Match: D7G456_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G456_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.060e-35
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 GASDGDGGALGKEQAYIGMTEEQFRLTLHAHLLVWVYGYSSRDQLREDLGTSLEKHAALAKYVGRIICNQLMSTEEVDYCLMNGSEPVYS 270
            GA+DGDGGALG  +A+IGMTEEQ RL LH HL+VWV+G++SR+QLR D+G +L+KHA LA Y+GRII NQ+MS EEV++ L+N  EPVY+
Sbjct:   12 GANDGDGGALGNIKAHIGMTEEQHRLMLHGHLMVWVHGFTSREQLRNDIGHNLKKHAELANYIGRIIYNQVMSLEEVEFGLLNAYEPVYN 101
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BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.220e-31
Identity = 60/89 (67.42%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    4 ASDGDGGALGKEQAYIGMTEEQFRLTLHAHLLVWVYGYSSRDQLREDLGTSLEKHAALAKYVGRIICNQLMSTEEVDYCLMNGSEPVYS 270
            A+ GDGGALG  +AYIGMTEEQ RL LH HL+VWV+G++SR+QLR+ +G SL+KHA LAKY+GRII NQ+MS EEV++ L N SEPVY+
Sbjct:  497 ANYGDGGALGNIKAYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQGVGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQSEPVYN 585
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BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Match: A0A6H5K355_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K355_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.100e-29
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 GASDGDGGALGKEQAYIGMTEEQFRLTLHAHLLVWVYGYSSRDQLREDLGTSLEKHAALAK------YVGRIICNQLMSTEEVDYCLMNGSEPVYS 270
            GA DGDGGALG  +AYIGMTEEQ RL LH HL+VWV+G++SR+ LR+D+G SL+KHA LA+      Y+GR+I NQ+MS EEV++ L+N SEPVY+
Sbjct:  390 GAKDGDGGALGNIKAYIGMTEEQHRLMLHGHLMVWVHGFTSRE-LRDDIGRSLKKHAKLARVQEVLYYIGRLIYNQVMSLEEVEFSLLNASEPVYN 484
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BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Match: A0A6H5KK28_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK28_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.440e-21
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    4 ASDGDGGALGKEQAYIGMTEEQFRLTLHAHLLVWVYGYSSRDQLREDLGTSLEKHAALAK 183
            A+DGDGGALG  +AYIGMTEEQ RL LH HL+VWV+G++SR+QLR+D+G SL+KHA LAK
Sbjct:  143 ANDGDGGALGNIKAYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAK 202
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BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Match: A0A6H5K2C0_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C0_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.430e-20
Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:   85 HAHLLVWVYGYSSRDQLREDLGTSLEKHAALAKYVGRIICNQLMSTEEVDYCLMNGSEPVYS 270
            H HL+VWV+G++SR+QLR+D+G SL+KHA LAKY+GRII NQ+MS EEV++ L N SEPVY+
Sbjct:  199 HGHLMVWVHGFTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQSEPVYN 260
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BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Match: A0A6H5K657_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K657_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.070e-19
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    4 ASDGDGGALGKEQAYIGMTEEQFRLTLHAHLLVWVYGYSSRDQLREDLGTSLEKHAALAK 183
            A+DGDGG LG  +AYIGMTEEQ RL LH HL+VWV+G++SR+QLR+D+G SL+KHA LAK
Sbjct:  453 ANDGDGGPLGNIKAYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAK 512
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BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.170e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 GASDGDGGALGKEQAYIGMTEEQFRLTLHAHLLVWVYGYSSRDQLREDLGTSLEKHAALAKYVGRIICNQLMSTEEVDYCLMNGSEP 261
            GA DGDGG LG+ + Y+GMTEEQ RLTLH HLLVWVYGY+     RE +  +  ++  LA+Y+ ++I NQ+ +  ++++ +M G +P
Sbjct:  637 GACDGDGGVLGRVKGYVGMTEEQKRLTLHCHLLVWVYGYNDFASFRELMDKTPTRYFELAEYLDKVIFNQIATLSDINH-VMRGVQP 722
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BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.230e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 GASDGDGGALGKEQAYIGMTEEQFRLTLHAHLLVWVYGYSSRDQLREDLGTSLEKHAALAKYVGRIICNQLMSTEEVDYCLMNGSEP 261
            GA DGDGG LG+ + Y+GMTEEQ RLTLH HLLVWVYGY+     RE +  +  ++  LA+Y+ ++I NQ+ +  ++++ +M G +P
Sbjct:  717 GACDGDGGVLGRVKGYVGMTEEQKRLTLHCHLLVWVYGYNDFASFRELMDKTPTRYFELAEYLDKVIFNQIATLSDINH-VMRGVQP 802
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BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.720e-17
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 GASDGDGGALGKEQAYIGMTEEQFRLTLHAHLLVWVYGYSSRDQLREDLGTSLEKHAALAKYVGRIICNQLMSTEEVDYCLMNGSEPVY 267
            GASDGDGG LG+ + Y+GMTEEQ RL LHAHLLVW+YGY+     R  +  +  ++  LA+Y+  I+ NQ+ +  +++  +M G +P +
Sbjct:  782 GASDGDGGVLGRVKGYVGMTEEQKRLMLHAHLLVWIYGYNDFVSFRALMDKTPRRYTELARYLDNIVFNQIATLADINR-VMRGVDPAH 869
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BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.170e-16
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 GASDGDGGALGKEQAYIGMTEEQFRLTLHAHLLVWVYGYSSRDQLREDLGTSLEKHAALAKYVGRIICNQLMSTEEVDYCLMNGSEPV 264
            GASDGDGG LG+ + Y+GMTEEQ RL LH HLLVWV+GY+     R+ +  +  ++  LA+Y+  II NQ+ +  ++   +  G E +
Sbjct:  718 GASDGDGGILGRVKGYVGMTEEQKRLVLHCHLLVWVFGYNDFASFRDLMDRTPARYTELAQYLDNIIFNQVATLADITRVMHGGVEGI 805
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111552.2403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G456_ECTSI1.060e-3565.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1H7_9PHAE2.220e-3167.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K355_9PHAE1.100e-2962.50Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KK28_9PHAE1.440e-2171.67Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K2C0_9PHAE3.430e-2066.13Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K657_9PHAE2.070e-1970.00Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K8N9_9PHAE7.170e-1847.13Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5L0L4_9PHAE7.230e-1847.13Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KIB1_9PHAE4.720e-1744.94ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7G3U9_ECTSI4.170e-1644.32ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111552contigM-pyrifera_M_contig111552:6..275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.041574-CDS-M-pyrifera_M_contig111552:5..2751622815628.041574-CDS-M-pyrifera_M_contig111552:5..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111552 6..275 +
1692277494.7280333-CDS-M-pyrifera_M_contig111552:5..2751692277494.7280333-CDS-M-pyrifera_M_contig111552:5..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111552 6..275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111552.2403.1prot_M-pyrifera_M_contig111552.2403.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111552 6..275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111552.2403.1

>prot_M-pyrifera_M_contig111552.2403.1 ID=prot_M-pyrifera_M_contig111552.2403.1|Name=mRNA_M-pyrifera_M_contig111552.2403.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
GASDGDGGALGKEQAYIGMTEEQFRLTLHAHLLVWVYGYSSRDQLREDLG
TSLEKHAALAKYVGRIICNQLMSTEEVDYCLMNGSEPVYS
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mRNA from alignment at M-pyrifera_M_contig111552:6..275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111552.2403.1 ID=mRNA_M-pyrifera_M_contig111552.2403.1|Name=mRNA_M-pyrifera_M_contig111552.2403.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig111552:6..275+ (Macrocystis pyrifera P11B4 male)
GGCGCTTCTGACGGTGACGGTGGAGCCCTGGGGAAAGAGCAAGCATACAT
TGGCATGACGGAGGAGCAATTCAGGCTCACTCTGCACGCACATCTCCTGG
TTTGGGTTTATGGGTATAGCAGCCGCGATCAGCTCCGAGAAGATCTCGGC
ACAAGTTTAGAAAAGCACGCTGCTCTTGCCAAATACGTAGGCCGTATTAT
CTGCAATCAACTCATGTCAACTGAGGAAGTGGATTACTGCCTTATGAATG
GATCAGAACCCGTCTACAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111552:6..275+

>mRNA_M-pyrifera_M_contig111552.2403.1 ID=mRNA_M-pyrifera_M_contig111552.2403.1|Name=mRNA_M-pyrifera_M_contig111552.2403.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig111552:6..275+ (Macrocystis pyrifera P11B4 male)
GGCGCTTCTGACGGTGACGGTGGAGCCCTGGGGAAAGAGCAAGCATACAT
TGGCATGACGGAGGAGCAATTCAGGCTCACTCTGCACGCACATCTCCTGG
TTTGGGTTTATGGGTATAGCAGCCGCGATCAGCTCCGAGAAGATCTCGGC
ACAAGTTTAGAAAAGCACGCTGCTCTTGCCAAATACGTAGGCCGTATTAT
CTGCAATCAACTCATGTCAACTGAGGAAGTGGATTACTGCCTTATGAATG
GATCAGAACCCGTCTACAGCGGCGCTTCTGACGGTGACGGTGGAGCCCTG
GGGAAAGAGCAAGCATACATTGGCATGACGGAGGAGCAATTCAGGCTCAC
TCTGCACGCACATCTCCTGGTTTGGGTTTATGGGTATAGCAGCCGCGATC
AGCTCCGAGAAGATCTCGGCACAAGTTTAGAAAAGCACGCTGCTCTTGCC
AAATACGTAGGCCGTATTATCTGCAATCAACTCATGTCAACTGAGGAAGT
GGATTACTGCCTTATGAATGGATCAGAACCCGTCTACAGC
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