mRNA_M-pyrifera_M_contig111539.2402.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111539.2402.1
Unique NamemRNA_M-pyrifera_M_contig111539.2402.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111539.2402.1 vs. uniprot
Match: A0A0F9H928_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9H928_9ZZZZ)

HSP 1 Score: 103 bits (257), Expect = 6.260e-25
Identity = 55/125 (44.00%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:    1 VFIKVRIDEILNEGEWFDWREHE-FEAL-GSVFIIGKEGQLLERGCKTLIDNAGWDGDLTSIAENQWEPTPVQINVGSEKYQDETQYKIKFVNSYDRMPGNGSVSSGDAAAMQAKFGAQLRAMAG 369
            V IKV IDE  +  E   W  +E F  + G V+IIG +G L +R  ++L D+AGW+GD  SI++  W+PTPVQ+ VG+ + Q  T+Y+I +VN+YD +PG   +++  A  + AK+G+QLRA+ G
Sbjct:   30 VGIKVEIDEYWH-AETQQWGSYEGFPVVSGVVWIIGTDGVLNQRQVQSLTDHAGWNGDFDSISDGTWKPTPVQVKVGTNERQGNTEYRIDWVNAYDSIPGGSGLNAETAKELNAKYGSQLRALRG 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111539.2402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0F9H928_9ZZZZ6.260e-2544.00Uncharacterized protein n=1 Tax=marine sediment me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111539contigM-pyrifera_M_contig111539:1..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.9996192-CDS-M-pyrifera_M_contig111539:0..4411622815627.9996192-CDS-M-pyrifera_M_contig111539:0..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111539 1..441 +
1692277494.7140749-CDS-M-pyrifera_M_contig111539:0..4411692277494.7140749-CDS-M-pyrifera_M_contig111539:0..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111539 1..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111539.2402.1prot_M-pyrifera_M_contig111539.2402.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111539 1..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111539.2402.1

>prot_M-pyrifera_M_contig111539.2402.1 ID=prot_M-pyrifera_M_contig111539.2402.1|Name=mRNA_M-pyrifera_M_contig111539.2402.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
VFIKVRIDEILNEGEWFDWREHEFEALGSVFIIGKEGQLLERGCKTLIDN
AGWDGDLTSIAENQWEPTPVQINVGSEKYQDETQYKIKFVNSYDRMPGNG
SVSSGDAAAMQAKFGAQLRAMAGGKKGKPEARKAPPKANPPKAADAT
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mRNA from alignment at M-pyrifera_M_contig111539:1..441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111539.2402.1 ID=mRNA_M-pyrifera_M_contig111539.2402.1|Name=mRNA_M-pyrifera_M_contig111539.2402.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig111539:1..441+ (Macrocystis pyrifera P11B4 male)
GTATTCATCAAGGTTCGCATCGACGAAATCTTGAATGAAGGTGAGTGGTT
CGATTGGAGGGAGCACGAGTTCGAGGCACTTGGCAGTGTGTTCATTATTG
GCAAGGAAGGCCAACTCCTAGAGCGTGGGTGCAAGACGCTCATCGATAAC
GCTGGGTGGGACGGCGATCTCACGTCGATTGCCGAAAACCAATGGGAGCC
AACACCCGTTCAAATCAACGTAGGCTCCGAGAAGTACCAGGACGAAACGC
AGTACAAAATCAAGTTCGTGAACTCGTATGACCGTATGCCAGGCAATGGT
TCGGTGTCCTCCGGTGATGCTGCGGCTATGCAAGCAAAGTTTGGGGCACA
GCTCCGAGCGATGGCCGGAGGGAAGAAAGGGAAGCCAGAGGCACGGAAGG
CACCTCCTAAGGCTAATCCCCCTAAGGCTGCTGATGCGACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111539:1..441+

>mRNA_M-pyrifera_M_contig111539.2402.1 ID=mRNA_M-pyrifera_M_contig111539.2402.1|Name=mRNA_M-pyrifera_M_contig111539.2402.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig111539:1..441+ (Macrocystis pyrifera P11B4 male)
GTATTCATCAAGGTTCGCATCGACGAAATCTTGAATGAAGGTGAGTGGTT
CGATTGGAGGGAGCACGAGTTCGAGGCACTTGGCAGTGTGTTCATTATTG
GCAAGGAAGGCCAACTCCTAGAGCGTGGGTGCAAGACGCTCATCGATAAC
GCTGGGTGGGACGGCGATCTCACGTCGATTGCCGAAAACCAATGGGAGCC
AACACCCGTTCAAATCAACGTAGGCTCCGAGAAGTACCAGGACGAAACGC
AGTACAAAATCAAGTTCGTGAACTCGTATGACCGTATGCCAGGCAATGGT
TCGGTGTCCTCCGGTGATGCTGCGGCTATGCAAGCAAAGTTTGGGGCACA
GCTCCGAGCGATGGCCGGAGGGAAGAAAGGGAAGCCAGAGGCACGGAAGG
CACCTCCTAAGGCTAATCCCCCTAAGGCTGCTGATGCGACGGTATTCATC
AAGGTTCGCATCGACGAAATCTTGAATGAAGGTGAGTGGTTCGATTGGAG
GGAGCACGAGTTCGAGGCACTTGGCAGTGTGTTCATTATTGGCAAGGAAG
GCCAACTCCTAGAGCGTGGGTGCAAGACGCTCATCGATAACGCTGGGTGG
GACGGCGATCTCACGTCGATTGCCGAAAACCAATGGGAGCCAACACCCGT
TCAAATCAACGTAGGCTCCGAGAAGTACCAGGACGAAACGCAGTACAAAA
TCAAGTTCGTGAACTCGTATGACCGTATGCCAGGCAATGGTTCGGTGTCC
TCCGGTGATGCTGCGGCTATGCAAGCAAAGTTTGGGGCACAGCTCCGAGC
GATGGCCGGAGGGAAGAAAGGGAAGCCAGAGGCACGGAAGGCACCTCCTA
AGGCTAATCCCCCTAAGGCTGCTGATGCGACG
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