mRNA_M-pyrifera_M_contig111527.2399.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111527.2399.1
Unique NamemRNA_M-pyrifera_M_contig111527.2399.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111527.2399.1 vs. uniprot
Match: A0A7S0IES8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IES8_MICPS)

HSP 1 Score: 55.5 bits (132), Expect = 6.080e-6
Identity = 28/76 (36.84%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    1 RFVSMRNNLFSAQVAAASRERDKEVLSGRKERPWLEKIGSGWTVFGVLLALLLLPIFVFSTLNPVLEKNPIYGAQV 228
            RF ++ + L+   +   +R ++KE+ SGR + P + K+  G+T+F  ++ LLL PIF+FS++NPVL  N +  A +
Sbjct:  565 RFENLYHMLWKDLLYQEARRQNKEIYSGRDKFPLVFKMLQGFTIFTGIILLLLAPIFLFSSINPVLSPNKVTSANL 640
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BLAST of mRNA_M-pyrifera_M_contig111527.2399.1 vs. uniprot
Match: C1DZW1_MICCC (Piezo_RRas_bdg domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1DZW1_MICCC)

HSP 1 Score: 55.5 bits (132), Expect = 6.580e-6
Identity = 28/76 (36.84%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    1 RFVSMRNNLFSAQVAAASRERDKEVLSGRKERPWLEKIGSGWTVFGVLLALLLLPIFVFSTLNPVLEKNPIYGAQV 228
            RF ++ + L+   +   +R ++KE+ SGR + P + K+  G+T+F  ++ LLL PIF+FS++NPVL  N +  A +
Sbjct: 3654 RFENLYHMLWKDLLYQEARRQNKEIYSGRDKFPLVFKMLQGFTIFTGIILLLLAPIFLFSSINPVLSPNKVTSANL 3729
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111527.2399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S0IES8_MICPS6.080e-636.84Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1DZW1_MICCC6.580e-636.84Piezo_RRas_bdg domain-containing protein n=2 Tax=M... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111527contigM-pyrifera_M_contig111527:111..590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size480
Cds size468
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.859304-CDS-M-pyrifera_M_contig111527:110..5781622815627.859304-CDS-M-pyrifera_M_contig111527:110..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111527 111..578 -
1692277494.6383646-CDS-M-pyrifera_M_contig111527:110..5781692277494.6383646-CDS-M-pyrifera_M_contig111527:110..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111527 111..578 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.8741233-UTR-M-pyrifera_M_contig111527:578..5901622815627.8741233-UTR-M-pyrifera_M_contig111527:578..590Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111527 579..590 -
1692277494.6658611-UTR-M-pyrifera_M_contig111527:578..5901692277494.6658611-UTR-M-pyrifera_M_contig111527:578..590Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111527 579..590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111527.2399.1prot_M-pyrifera_M_contig111527.2399.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111527 111..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111527.2399.1

>prot_M-pyrifera_M_contig111527.2399.1 ID=prot_M-pyrifera_M_contig111527.2399.1|Name=mRNA_M-pyrifera_M_contig111527.2399.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
MRNNLFSAQVAAASRERDKEVLSGRKERPWLEKIGSGWTVFGVLLALLLL
PIFVFSTLNPVLEKNPIYGAQVVLAFHGGGTTYTVFDRAQYRAIYTPQNS
SEHGFFSKLQTNATPHGELASPIRPAMRNEIQQVVMLPFPAADWVISPPA
LSGFLD
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mRNA from alignment at M-pyrifera_M_contig111527:111..590-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111527.2399.1 ID=mRNA_M-pyrifera_M_contig111527.2399.1|Name=mRNA_M-pyrifera_M_contig111527.2399.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig111527:111..590- (Macrocystis pyrifera P11B4 male)
CGCTTTGTTTCAATGCGTAACAACTTGTTCAGTGCGCAGGTGGCTGCTGC
TTCTCGTGAGAGGGATAAGGAAGTTCTTTCTGGACGAAAAGAGCGACCAT
GGCTGGAGAAAATTGGGAGCGGTTGGACTGTGTTTGGAGTTCTTCTCGCA
CTTCTCCTTCTCCCCATCTTTGTCTTCTCCACTCTCAATCCAGTTTTGGA
GAAGAACCCTATTTATGGTGCTCAAGTTGTCTTGGCGTTTCATGGTGGTG
GAACAACGTATACAGTGTTTGACCGCGCTCAATACCGTGCAATCTACACC
CCACAAAACTCTTCGGAGCACGGCTTCTTTTCCAAGCTACAGACAAATGC
AACACCACACGGAGAATTGGCATCTCCAATTCGACCTGCCATGCGCAACG
AAATTCAGCAGGTGGTTATGCTTCCATTCCCAGCTGCAGATTGGGTGATA
TCACCCCCAGCGTTGAGTGGTTTCCTTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111527:111..590-

>mRNA_M-pyrifera_M_contig111527.2399.1 ID=mRNA_M-pyrifera_M_contig111527.2399.1|Name=mRNA_M-pyrifera_M_contig111527.2399.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig111527:111..590- (Macrocystis pyrifera P11B4 male)
ATGCGTAACAACTTGTTCAGTGCGCAGGTGGCTGCTGCTTCTCGTGAGAG
GGATAAGGAAGTTCTTTCTGGACGAAAAGAGCGACCATGGCTGGAGAAAA
TTGGGAGCGGTTGGACTGTGTTTGGAGTTCTTCTCGCACTTCTCCTTCTC
CCCATCTTTGTCTTCTCCACTCTCAATCCAGTTTTGGAGAAGAACCCTAT
TTATGGTGCTCAAGTTGTCTTGGCGTTTCATGGTGGTGGAACAACGTATA
CAGTGTTTGACCGCGCTCAATACCGTGCAATCTACACCCCACAAAACTCT
TCGGAGCACGGCTTCTTTTCCAAGCTACAGACAAATGCAACACCACACGG
AGAATTGGCATCTCCAATTCGACCTGCCATGCGCAACGAAATTCAGCAGG
TGGTTATGCTTCCATTCCCAGCTGCAGATTGGGTGATATCACCCCCAGCG
TTGAGTGGTTTCCTTGATATGCGTAACAACTTGTTCAGTGCGCAGGTGGC
TGCTGCTTCTCGTGAGAGGGATAAGGAAGTTCTTTCTGGACGAAAAGAGC
GACCATGGCTGGAGAAAATTGGGAGCGGTTGGACTGTGTTTGGAGTTCTT
CTCGCACTTCTCCTTCTCCCCATCTTTGTCTTCTCCACTCTCAATCCAGT
TTTGGAGAAGAACCCTATTTATGGTGCTCAAGTTGTCTTGGCGTTTCATG
GTGGTGGAACAACGTATACAGTGTTTGACCGCGCTCAATACCGTGCAATC
TACACCCCACAAAACTCTTCGGAGCACGGCTTCTTTTCCAAGCTACAGAC
AAATGCAACACCACACGGAGAATTGGCATCTCCAATTCGACCTGCCATGC
GCAACGAAATTCAGCAGGTGGTTATGCTTCCATTCCCAGCTGCAGATTGG
GTGATATCACCCCCAGCGTTGAGTGGTTTCCTTGAT
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