mRNA_M-pyrifera_M_contig111525.2398.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111525.2398.1
Unique NamemRNA_M-pyrifera_M_contig111525.2398.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Match: A0A6P8PMB1_GEOSA (signal peptide peptidase-like 2A isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8PMB1_GEOSA)

HSP 1 Score: 65.9 bits (159), Expect = 6.380e-11
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   31 YFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLATSIVAWRRGELLILWNG 201
            Y+ A  +AYAVG+GV  +A+AL   GQPALLYL+P TL+ +S+VAWRR E+   W G
Sbjct:  460 YYAACTVAYAVGMGVTFIALALMKTGQPALLYLVPCTLITSSVVAWRRKEMKKFWKG 516          
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Match: A0A5A8CDY0_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CDY0_CAFRO)

HSP 1 Score: 65.5 bits (158), Expect = 8.810e-11
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    4 LARAPRFGPYFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLATSIVAWRRGELLILW 195
            L RA   G +F+A+  AY VG+G+A LAV L+G+GQPALLY+MP+  +A   VAWRRGEL  +W
Sbjct:  561 LGRAYTTGYWFSAVG-AYGVGLGLAQLAVQLSGVGQPALLYIMPAVAIALVAVAWRRGELSRVW 623          
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Match: A0A6P7WQG9_9AMPH (signal peptide peptidase-like 2A isoform X1 n=3 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7WQG9_9AMPH)

HSP 1 Score: 65.1 bits (157), Expect = 1.190e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   31 YFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLATSIVAWRRGELLILWNG 201
            Y+ A  +AYAVG+GV  +A+AL   GQPALLYL+P TL+ +S+VAW R E+   WNG
Sbjct:  460 YYAACTVAYAVGMGVTFMALALMKEGQPALLYLVPCTLITSSVVAWSRKEMKKFWNG 516          
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Match: F0VYU0_9STRA (Signal peptide peptidaselike putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYU0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.240e-10
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   31 YFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLATSIVAWRRGELLILWNGFKH 210
            Y+    IA+AVG+G+A  AV+ +GLGQPAL+YL+P TL AT + AW   EL + W+ FKH
Sbjct:  556 YYITASIAFAVGLGMANTAVSFSGLGQPALMYLVPCTLGATILRAWMNNELKLFWSEFKH 615          
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Match: UPI001CFA94CD (signal peptide peptidase-like 2A isoform X1 n=3 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFA94CD)

HSP 1 Score: 63.9 bits (154), Expect = 3.040e-10
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   31 YFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLATSIVAWRRGELLILWNGFKH 210
            YF +  +AYAVG+ +A   + LT +GQPALLYL+P T++ ++++AWRRGE+ + W G  +
Sbjct:  451 YFISCTLAYAVGMVIAFTVLILTKMGQPALLYLVPFTIITSTVIAWRRGEIKMFWKGSSY 510          
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Match: A0A024G1C2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G1C2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.820e-10
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   31 YFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLATSIVAWRRGELLILWNGF 204
            YF  + IAYA+G+G+A  AV LTG+GQPAL+YL+P TL AT + AW   EL + W+ F
Sbjct:  591 YFITVSIAYALGLGMANAAVNLTGVGQPALMYLVPCTLGATIVRAWINNELRLFWSDF 648          
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Match: A0A5D6Z131_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Z131_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.820e-10
Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   31 YFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLATSIVAWRRGELLILWNG 201
            Y+ ++CI YAVG+G+A +AV++  +GQPAL+YL+P+TL     +AW+ G+L  +W G
Sbjct:  567 YYRSVCIGYAVGLGLANIAVSVMQMGQPALMYLVPTTLGTVVALAWKNGDLKAMWTG 623          
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Match: B7QDC0_IXOSC (Uncharacterized protein (Fragment) n=2 Tax=Ixodes scapularis TaxID=6945 RepID=B7QDC0_IXOSC)

HSP 1 Score: 62.4 bits (150), Expect = 9.010e-10
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 ILARAPRFGPYFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLATSIVAWRRGELLILWNGFK 207
            +LA   RF  Y+   C+AY VG+ V  LA+ L  + QPALLYL+P T++A  ++AW +G L  +WNG +
Sbjct:   89 LLALGKRF--YYYVACVAYGVGMVVTFLALHLMHIAQPALLYLVPCTVVAVVVLAWYKGHLYAMWNGVR 155          
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Match: A0A2L2YD61_PARTP (Signal peptide peptidase-like 2B (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YD61_PARTP)

HSP 1 Score: 60.1 bits (144), Expect = 1.390e-9
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   31 YFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLATSIVAWRRGELLILWNGFKH 210
            YF    I++A+G+ +  + + L    QPALLYL+P TL+  +I+ W RGE  +LWNGF+H
Sbjct:   49 YFLVTVISFAIGLLITFVGLFLMNTAQPALLYLVPCTLIPPAIIGWCRGEFSLLWNGFRH 108          
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Match: A0A8C4JA58_DRONO (Signal peptide peptidase like 2A n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=A0A8C4JA58_DRONO)

HSP 1 Score: 61.6 bits (148), Expect = 1.950e-9
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   31 YFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLATSIVAWRRGELLILWNGFKH 210
            Y+ +  IAYAVG+ +  + +AL  +GQPALLYL+P TL+ +S+VAWRR E+   WNG  +
Sbjct:  346 YYISCTIAYAVGMVLTFVVLALMKMGQPALLYLVPCTLITSSLVAWRRKEMKKFWNGSSY 405          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111525.2398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P8PMB1_GEOSA6.380e-1156.14signal peptide peptidase-like 2A isoform X1 n=2 Ta... [more]
A0A5A8CDY0_CAFRO8.810e-1156.25Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A6P7WQG9_9AMPH1.190e-1056.14signal peptide peptidase-like 2A isoform X1 n=3 Ta... [more]
F0VYU0_9STRA2.240e-1053.33Signal peptide peptidaselike putative n=1 Tax=Albu... [more]
UPI001CFA94CD3.040e-1046.67signal peptide peptidase-like 2A isoform X1 n=3 Ta... [more]
A0A024G1C2_9STRA7.820e-1055.17Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A5D6Z131_9STRA7.820e-1047.37Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
B7QDC0_IXOSC9.010e-1044.93Uncharacterized protein (Fragment) n=2 Tax=Ixodes ... [more]
A0A2L2YD61_PARTP1.390e-945.00Signal peptide peptidase-like 2B (Fragment) n=1 Ta... [more]
A0A8C4JA58_DRONO1.950e-950.00Signal peptide peptidase like 2A n=1 Tax=Dromaius ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111525contigM-pyrifera_M_contig111525:358..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog653948.CCA13955
KEGG koko:K09596,ko:K09597,ko:K09598
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG2442@2759,KOG2443@1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.8131974-CDS-M-pyrifera_M_contig111525:357..5671622815627.8131974-CDS-M-pyrifera_M_contig111525:357..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111525 358..567 -
1692277494.6106677-CDS-M-pyrifera_M_contig111525:357..5671692277494.6106677-CDS-M-pyrifera_M_contig111525:357..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111525 358..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111525.2398.1prot_M-pyrifera_M_contig111525.2398.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111525 358..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111525.2398.1

>prot_M-pyrifera_M_contig111525.2398.1 ID=prot_M-pyrifera_M_contig111525.2398.1|Name=mRNA_M-pyrifera_M_contig111525.2398.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
ILARAPRFGPYFNAICIAYAVGVGVAMLAVALTGLGQPALLYLMPSTLLA
TSIVAWRRGELLILWNGFKH
back to top

mRNA from alignment at M-pyrifera_M_contig111525:358..567-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111525.2398.1 ID=mRNA_M-pyrifera_M_contig111525.2398.1|Name=mRNA_M-pyrifera_M_contig111525.2398.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig111525:358..567- (Macrocystis pyrifera P11B4 male)
ATCCTCGCTCGAGCTCCAAGATTTGGACCTTACTTTAACGCAATTTGCAT TGCCTATGCAGTTGGGGTTGGCGTTGCAATGCTTGCTGTCGCACTCACTG GTCTTGGGCAACCAGCACTTCTCTACCTCATGCCATCAACCCTCCTTGCC ACTTCAATTGTCGCATGGCGAAGAGGGGAATTGTTGATATTGTGGAATGG GTTCAAACAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111525:358..567-

>mRNA_M-pyrifera_M_contig111525.2398.1 ID=mRNA_M-pyrifera_M_contig111525.2398.1|Name=mRNA_M-pyrifera_M_contig111525.2398.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig111525:358..567- (Macrocystis pyrifera P11B4 male)
ATCCTCGCTCGAGCTCCAAGATTTGGACCTTACTTTAACGCAATTTGCAT
TGCCTATGCAGTTGGGGTTGGCGTTGCAATGCTTGCTGTCGCACTCACTG
GTCTTGGGCAACCAGCACTTCTCTACCTCATGCCATCAACCCTCCTTGCC
ACTTCAATTGTCGCATGGCGAAGAGGGGAATTGTTGATATTGTGGAATGG
GTTCAAACACATCCTCGCTCGAGCTCCAAGATTTGGACCTTACTTTAACG
CAATTTGCATTGCCTATGCAGTTGGGGTTGGCGTTGCAATGCTTGCTGTC
GCACTCACTGGTCTTGGGCAACCAGCACTTCTCTACCTCATGCCATCAAC
CCTCCTTGCCACTTCAATTGTCGCATGGCGAAGAGGGGAATTGTTGATAT
TGTGGAATGGGTTCAAACAC
back to top