mRNA_M-pyrifera_M_contig111476.2384.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111476.2384.1
Unique NamemRNA_M-pyrifera_M_contig111476.2384.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Match: L8HG11_ACACA (Guanylate cyclase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HG11_ACACA)

HSP 1 Score: 62.8 bits (151), Expect = 3.350e-10
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 WELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELENF 150
            WE+++S++E+ E +G GGFGEV+R TWKG EVAVK +  D +T D  ++F
Sbjct:  764 WEINYSELEVGEHLGSGGFGEVHRATWKGTEVAVKVMASDRITRDMEKSF 813
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BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Match: F2E4N3_HORVV (Guanylate cyclase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E4N3_HORVV)

HSP 1 Score: 62.0 bits (149), Expect = 6.250e-10
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 WELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELENF 150
            WE+DF ++E+ + +G GGFGEVYR TWKG EVAVK +  +  T +   NF
Sbjct:  796 WEIDFDELEMGDILGTGGFGEVYRATWKGTEVAVKVMASEKATKEMERNF 845
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BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Match: A0A2K1KBN1_PHYPA (Protein kinase domain-containing protein n=7 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KBN1_PHYPA)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-9
Identity = 22/50 (44.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 WELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELENF 150
            W++DF+++ +  ++G G FGEV+RG W+G EVA+K +L   LTD+ +++F
Sbjct:  688 WDIDFAELRIGVRVGIGSFGEVFRGIWRGTEVAIKVMLEQDLTDENMQDF 737
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BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Match: A0A1Y1II91_KLENI (Serine Threonine protein kinase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1II91_KLENI)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-9
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 WELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELENF 150
            W +DF++++L  ++G G FGEV+RG W+G EVAVK LL   L+ D +++F
Sbjct:  827 WHIDFAEIKLGIRVGVGSFGEVFRGIWRGTEVAVKLLLEQDLSPDNMDDF 876
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BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Match: UPI001BB1B580 (mitogen-activated protein kinase kinase kinase 10-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1B580)

HSP 1 Score: 60.5 bits (145), Expect = 1.440e-9
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 ELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELEN 147
            E+DF++++L E IG GGFG+V+RG+W+G EVAVK   HD   DD + +
Sbjct:  117 EIDFNEIQLNELIGVGGFGKVFRGSWRGEEVAVKAARHDPEDDDNMRS 164
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BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Match: A0A183M8C5_9TREM (Protein kinase domain-containing protein n=3 Tax=Schistosoma TaxID=6181 RepID=A0A183M8C5_9TREM)

HSP 1 Score: 58.5 bits (140), Expect = 2.000e-9
Identity = 27/50 (54.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    1 WELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELENF 150
            WELD  DV+L +KIGQG FG+VYRG + G EVAVK    D    D    F
Sbjct:   24 WELDNRDVQLLQKIGQGNFGDVYRGVYNGNEVAVKTCRVDMTASDLRRKF 73
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BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Match: A0A176W9P4_MARPO (Protein kinase domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W9P4_MARPO)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 WELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELENF 150
            W +D+ ++ +  ++G G FGEV+RG W+G EVA+KRLL   LTD+   +F
Sbjct:  885 WHIDYKELRIGVRVGIGSFGEVFRGMWRGTEVAIKRLLEQDLTDENTADF 934
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BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Match: L8HCL1_ACACA (Guanylate cyclase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCL1_ACACA)

HSP 1 Score: 60.5 bits (145), Expect = 2.190e-9
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 WELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELENF 150
            WE+ + ++E+ E +G GGFGEVYR TWKG EVAVK +  D ++ D  ++F
Sbjct:  717 WEIRYDELEVGEHLGTGGFGEVYRATWKGTEVAVKVMASDRISKDMEKSF 766
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BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Match: A0A699ZVL8_HAELA (Mitogen activated protein kinase kinase kinase 3 n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZVL8_HAELA)

HSP 1 Score: 60.1 bits (144), Expect = 2.300e-9
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 WELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELENF 150
            WE+D  ++   +++G G FGEV+RG W+G EVA+KRLL   L+D  + +F
Sbjct:   15 WEIDPGELVFGQRLGMGSFGEVFRGEWRGTEVAIKRLLEHTLSDSSMRDF 64
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BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Match: A9SBL3_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SBL3_PHYPA)

HSP 1 Score: 60.1 bits (144), Expect = 2.980e-9
Identity = 22/50 (44.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 WELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELENF 150
            W ++FS++ +  ++G G FGEV+RG W+G EVA+K +L   LTD+ +++F
Sbjct:  502 WNIEFSELRIGVRVGIGSFGEVFRGIWRGTEVAIKVMLEQDLTDENMQDF 551
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111476.2384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8HG11_ACACA3.350e-1052.00Guanylate cyclase n=1 Tax=Acanthamoeba castellanii... [more]
F2E4N3_HORVV6.250e-1052.00Guanylate cyclase n=1 Tax=Hordeum vulgare subsp. v... [more]
A0A2K1KBN1_PHYPA1.170e-944.00Protein kinase domain-containing protein n=7 Tax=P... [more]
A0A1Y1II91_KLENI1.170e-948.00Serine Threonine protein kinase n=1 Tax=Klebsormid... [more]
UPI001BB1B5801.440e-952.08mitogen-activated protein kinase kinase kinase 10-... [more]
A0A183M8C5_9TREM2.000e-954.00Protein kinase domain-containing protein n=3 Tax=S... [more]
A0A176W9P4_MARPO2.180e-946.00Protein kinase domain-containing protein n=2 Tax=M... [more]
L8HCL1_ACACA2.190e-950.00Guanylate cyclase n=1 Tax=Acanthamoeba castellanii... [more]
A0A699ZVL8_HAELA2.300e-946.00Mitogen activated protein kinase kinase kinase 3 n... [more]
A9SBL3_PHYPA2.980e-944.00Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111476contigM-pyrifera_M_contig111476:281..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue7e-08
Seed eggNOG ortholog4641.GSMUA_Achr10P25320_001
KEGG koko:K04424,ko:K14510
KEGG Pathwayko04010,ko04016,ko04075,map04010,map04016,map04075
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001666,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004712,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006464,GO:0006468,GO:0006629,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009628,GO:0009651,GO:0009685,GO:0009686,GO:0009719,GO:0009723,GO:0009725,GO:0009743,GO:0009744,GO:0009746,GO:0009750,GO:0009756,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010104,GO:0010105,GO:0010182,GO:0010646,GO:0010648,GO:0010817,GO:0012505,GO:0016020,GO:0016053,GO:0016101,GO:0016102,GO:0016114,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019752,GO:0023051,GO:0023052,GO:0023057,GO:0031984,GO:0034284,GO:0034285,GO:0035556,GO:0036211,GO:0036293,GO:0040034,GO:0042175,GO:0042221,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046777,GO:0048506,GO:0048509,GO:0048510,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051302,GO:0051716,GO:0065007,GO:0065008,GO:0070297,GO:0070298,GO:0070482,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071310,GO:0071322,GO:0071704,GO:0098827,GO:0140096,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1902531,GO:1902532,GO:2000026,GO:2000035,GO:2000069,GO:2000280
EggNOG free text desc.Ethylene-responsive protein kinase Le-CTR1
EggNOG OGs37JYB@33090,3G8KY@35493,3KYPJ@4447,COG0515@1,KOG0192@2759
EC2.7.11.1,2.7.11.25
COG Functional cat.T
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.2132096-CDS-M-pyrifera_M_contig111476:280..4301622815627.2132096-CDS-M-pyrifera_M_contig111476:280..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111476 281..430 +
1692277494.357131-CDS-M-pyrifera_M_contig111476:280..4301692277494.357131-CDS-M-pyrifera_M_contig111476:280..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111476 281..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111476.2384.1prot_M-pyrifera_M_contig111476.2384.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111476 281..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111476.2384.1

>prot_M-pyrifera_M_contig111476.2384.1 ID=prot_M-pyrifera_M_contig111476.2384.1|Name=mRNA_M-pyrifera_M_contig111476.2384.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
WELDFSDVELFEKIGQGGFGEVYRGTWKGGEVAVKRLLHDALTDDELENF
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mRNA from alignment at M-pyrifera_M_contig111476:281..430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111476.2384.1 ID=mRNA_M-pyrifera_M_contig111476.2384.1|Name=mRNA_M-pyrifera_M_contig111476.2384.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig111476:281..430+ (Macrocystis pyrifera P11B4 male)
TGGGAGCTTGACTTCTCAGACGTGGAGCTCTTCGAGAAGATCGGCCAGGG
TGGCTTCGGCGAGGTGTACAGGGGCACATGGAAGGGCGGAGAAGTCGCCG
TCAAGAGGCTTCTCCACGACGCGCTCACCGATGACGAGCTCGAGAACTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111476:281..430+

>mRNA_M-pyrifera_M_contig111476.2384.1 ID=mRNA_M-pyrifera_M_contig111476.2384.1|Name=mRNA_M-pyrifera_M_contig111476.2384.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig111476:281..430+ (Macrocystis pyrifera P11B4 male)
TGGGAGCTTGACTTCTCAGACGTGGAGCTCTTCGAGAAGATCGGCCAGGG
TGGCTTCGGCGAGGTGTACAGGGGCACATGGAAGGGCGGAGAAGTCGCCG
TCAAGAGGCTTCTCCACGACGCGCTCACCGATGACGAGCTCGAGAACTTC
TGGGAGCTTGACTTCTCAGACGTGGAGCTCTTCGAGAAGATCGGCCAGGG
TGGCTTCGGCGAGGTGTACAGGGGCACATGGAAGGGCGGAGAAGTCGCCG
TCAAGAGGCTTCTCCACGACGCGCTCACCGATGACGAGCTCGAGAACTTC
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