mRNA_M-pyrifera_M_contig111408.2371.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111408.2371.1
Unique NamemRNA_M-pyrifera_M_contig111408.2371.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Match: D7FXV4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV4_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.360e-36
Identity = 53/67 (79.10%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 QDNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQFIRPEVCRTYHFGRKVG 201
            +DN A+ R+DFFPGLGWMLPRRVWDE+AADWP+AYWDDW+R+P +R+GRQFIRPEVCRTYHFG+K G
Sbjct:  342 KDNRALFRSDFFPGLGWMLPRRVWDELAADWPEAYWDDWLRDPRRRKGRQFIRPEVCRTYHFGQKAG 408
[Close]
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Match: A0A6H5L776_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L776_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.430e-35
Identity = 52/65 (80.00%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    4 DNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQFIRPEVCRTYHFGRKV 198
            DN+A+ R+DFFPGLGWMLPRRVWDE+AADWP+AYWDDW+R+P +R+GRQFIRPEVCRT+HFG+KV
Sbjct:  245 DNKALFRSDFFPGLGWMLPRRVWDELAADWPEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQKV 309
[Close]
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Match: A0A7S2XX81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX81_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.110e-31
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 QDNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQFIRPEVCRTYHFG 189
            +D E + R+DFFPGLGWM+PRR+W+E    WP+ YWDDWIREPPQR+GR+ IRPE+CRT+HFG
Sbjct:   62 KDPEMLYRSDFFPGLGWMMPRRLWEEFGPKWPRGYWDDWIREPPQRKGRETIRPEICRTFHFG 124
[Close]
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Match: A0A482SQF6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQF6_9ARCH)

HSP 1 Score: 115 bits (289), Expect = 3.030e-29
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 QDNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQFIRPEVCRTYHFG 189
            QD + + R+DFFPGLGWML RR+W+E+   WP+AYWDDW+REP QRQ RQFIRPEVCRT H+G
Sbjct:  220 QDTKQLYRSDFFPGLGWMLSRRIWEELGPKWPKAYWDDWLREPAQRQSRQFIRPEVCRTLHYG 282
[Close]
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Match: A0A1U7WJI4_NICSY (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=2 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7WJI4_NICSY)

HSP 1 Score: 105 bits (262), Expect = 1.190e-26
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 QDNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQFIRPEVCRTYHFG 189
            QD  A+ R+DFFPGLGWML +  WDE++  WP+AYWDDW+R     +GRQFIRPEVCRTY+FG
Sbjct:   36 QDPYALYRSDFFPGLGWMLSKSTWDELSPKWPKAYWDDWLRLKENHRGRQFIRPEVCRTYNFG 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Match: A0A7R9W829_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W829_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.730e-26
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 DNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQFIRPEVCRTYHFGRKVG 201
            D E +VR+DFFPGLGWM+ R VWDE+ + WP  YWDDW+R P  R+GRQF+RPEV RT+H G K G
Sbjct:  130 DPERLVRSDFFPGLGWMVTRAVWDEIGSKWPGRYWDDWLRRPEVRRGRQFVRPEVSRTFHIGVKGG 195
[Close]
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Match: UPI00090170FD (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090170FD)

HSP 1 Score: 104 bits (260), Expect = 2.600e-26
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    4 DNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQFIRPEVCRTYHFG 189
            D  A+ R+DFFPGLGWML R  WDE++  WP+AYWDDW+R     +GRQFIRPEVCRTY+FG
Sbjct:   41 DPYALYRSDFFPGLGWMLKRSTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFG 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Match: D8S8W9_SELML (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S8W9_SELML)

HSP 1 Score: 108 bits (269), Expect = 2.810e-26
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 QDNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQFIRPEVCRTYHFG 189
            QD EA+ R+DFFPGLGWML + +W E+A  WP+AYWDDW+R    R+GRQFIRPEVCRTY+FG
Sbjct:  241 QDPEALYRSDFFPGLGWMLKKSLWTELAPKWPKAYWDDWLRLNETRKGRQFIRPEVCRTYNFG 303
[Close]
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Match: A0A1Q3ALD2_CEPFO (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3ALD2_CEPFO)

HSP 1 Score: 107 bits (268), Expect = 4.380e-26
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    4 DNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQFIRPEVCRTYHFG 189
            D+ A+ R+DFFPGLGWML R  WDE++  WP+AYWDDW+R    R+GRQFIRPEVCRTY+FG
Sbjct:  252 DSYALYRSDFFPGLGWMLSRSTWDELSPKWPKAYWDDWLRLKENRKGRQFIRPEVCRTYNFG 313
[Close]
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Match: A0A2P2KHJ2_RHIMU (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KHJ2_RHIMU)

HSP 1 Score: 105 bits (262), Expect = 4.840e-26
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    4 DNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQFIRPEVCRTYHFGRKV 198
            D  A+ R+DFFPGLGWML + +WDE++  WP+AYWDDW+R     +GRQFIRPEVCRTY+FG  V
Sbjct:  227 DPYALYRSDFFPGLGWMLTKSIWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGELV 291
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111408.2371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXV4_ECTSI2.360e-3679.10Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A6H5L776_9PHAE1.430e-3580.00GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7S2XX81_9STRA5.110e-3168.25Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A482SQF6_9ARCH3.030e-2969.84Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1U7WJI4_NICSY1.190e-2665.08Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A7R9W829_9STRA1.730e-2663.64Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
UPI00090170FD2.600e-2666.13alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
D8S8W9_SELML2.810e-2668.25Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A1Q3ALD2_CEPFO4.380e-2667.74Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A2P2KHJ2_RHIMU4.840e-2663.08Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111408contigM-pyrifera_M_contig111408:88..288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue5.1e-30
Seed eggNOG ortholog2880.D7FXV4
Preferred nameMGAT1
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1413@1,KOG1413@2759
EC2.4.1.101
COG Functional cat.S
CAZyGT13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.321174-CDS-M-pyrifera_M_contig111408:87..2881622815626.321174-CDS-M-pyrifera_M_contig111408:87..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111408 88..288 -
1692277493.877762-CDS-M-pyrifera_M_contig111408:87..2881692277493.877762-CDS-M-pyrifera_M_contig111408:87..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111408 88..288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111408.2371.1prot_M-pyrifera_M_contig111408.2371.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111408 88..288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111408.2371.1

>prot_M-pyrifera_M_contig111408.2371.1 ID=prot_M-pyrifera_M_contig111408.2371.1|Name=mRNA_M-pyrifera_M_contig111408.2371.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
QDNEAVVRTDFFPGLGWMLPRRVWDEVAADWPQAYWDDWIREPPQRQGRQ
FIRPEVCRTYHFGRKVG
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mRNA from alignment at M-pyrifera_M_contig111408:88..288-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111408.2371.1 ID=mRNA_M-pyrifera_M_contig111408.2371.1|Name=mRNA_M-pyrifera_M_contig111408.2371.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig111408:88..288- (Macrocystis pyrifera P11B4 male)
CAGGACAACGAGGCAGTAGTACGAACCGACTTCTTTCCCGGACTGGGCTG
GATGCTCCCTCGGCGGGTGTGGGACGAAGTCGCCGCGGACTGGCCACAGG
CCTACTGGGACGACTGGATCAGGGAGCCGCCGCAAAGACAAGGCCGTCAG
TTCATTAGACCAGAAGTTTGCAGGACGTATCATTTCGGGCGGAAGGTGGG
T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111408:88..288-

>mRNA_M-pyrifera_M_contig111408.2371.1 ID=mRNA_M-pyrifera_M_contig111408.2371.1|Name=mRNA_M-pyrifera_M_contig111408.2371.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig111408:88..288- (Macrocystis pyrifera P11B4 male)
CAGGACAACGAGGCAGTAGTACGAACCGACTTCTTTCCCGGACTGGGCTG
GATGCTCCCTCGGCGGGTGTGGGACGAAGTCGCCGCGGACTGGCCACAGG
CCTACTGGGACGACTGGATCAGGGAGCCGCCGCAAAGACAAGGCCGTCAG
TTCATTAGACCAGAAGTTTGCAGGACGTATCATTTCGGGCGGAAGGTGGG
TCAGGACAACGAGGCAGTAGTACGAACCGACTTCTTTCCCGGACTGGGCT
GGATGCTCCCTCGGCGGGTGTGGGACGAAGTCGCCGCGGACTGGCCACAG
GCCTACTGGGACGACTGGATCAGGGAGCCGCCGCAAAGACAAGGCCGTCA
GTTCATTAGACCAGAAGTTTGCAGGACGTATCATTTCGGGCGGAAGGTGG
GT
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