mRNA_M-pyrifera_M_contig111380.2370.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111380.2370.1
Unique NamemRNA_M-pyrifera_M_contig111380.2370.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Match: A0A7S3PM91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PM91_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.580e-11
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   16 SPPPWACKHLDPGALRELLLCLDPSNIAVVLSALLAEQFIVLLTRHPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIEAPFTGIVGVDRTAL 309
            SPP  +   +D      LL CL P +I  ++S+LL+EQ I+++T HP  A   AEAL +L+ PFEW  V +PL+      ++I APF  +VG+    L
Sbjct:  116 SPPKMSLPLVDEDCFNVLLQCLSPESIVALISSLLSEQSILIVTEHPELAFPIAEALISLIFPFEWVHVYVPLLSKETI-QVINAPFPFLVGIQSKHL 212          
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Match: A0A7S4BNI6_CHRCT (Hypothetical protein n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNI6_CHRCT)

HSP 1 Score: 63.5 bits (153), Expect = 1.750e-9
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    4 VRVSSPPPWACKHLDPGALRELLL---CLDPSNIAVVLSALLAEQFIVLLTRHPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIEAPFTGIVGVDRTAL 309
            V+V  PP  A  H   G  R+ LL   CLD  +I ++ + LL EQ +VL  + P     AAE LCALL PF W  V +P++P      I++AP   ++G+D+  L
Sbjct:  218 VKVEIPPSNALPHTMSG--RDFLLLFQCLDAGSIIMLWALLLVEQKVVLHAQQPHVLTMAAETLCALLFPFNWQHVYIPILPARLLD-ILQAPVPFLMGIDQEVL 319          
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Match: A0A7S3W695_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W695_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 3.020e-9
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    4 VRVSSPPPWACKHLDPGALRELLL---CLDPSNIAVVLSALLAEQFIVLLTRHPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIEAPFTGIVGVDRTALAEA 318
            + V  PP     H   G  R+ LL   CLD S++ V+ + LLAEQ ++L  R       AAE+LCALL PF W  V +P++P      I++AP   ++G+D   L  A
Sbjct:  237 IHVVIPPANELPHTMAG--RDFLLLFECLDVSSVIVLWALLLAEQKVLLQARQTHVLTMAAESLCALLFPFSWQHVYIPILPASLLD-ILQAPVPFLIGIDEEVLGMA 341          
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Match: A0A6V4EW16_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6V4EW16_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 3.400e-7
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   61 RELLL---CLDPSNIAVVLSALLAEQFIVLLTRHPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIEAPFTGIVGVDRTALAEA 318
            R+ LL    L+  N+ ++ + LLAEQ +VL  + P     AAE LCALL PF W  V +P++P      I++AP   ++G+D   LA A
Sbjct:  233 RDFLLLFQALEVGNVIMLWALLLAEQKVVLQGKQPHVLTMAAETLCALLFPFSWQHVYIPILPARLLD-ILQAPVPFLMGIDEDVLALA 320          
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Match: A0A6T8DPZ6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T8DPZ6_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 3.470e-7
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   61 RELLL---CLDPSNIAVVLSALLAEQFIVLLTRHPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIEAPFTGIVGVDRTALAEA 318
            R+ LL    L+  N+ ++ + LLAEQ +VL  + P     AAE LCALL PF W  V +P++P      I++AP   ++G+D   LA A
Sbjct:  233 RDFLLLFQALEVGNVIMLWALLLAEQKVVLQGKQPHVLTMAAETLCALLFPFSWQHVYIPILPARLLD-ILQAPVPFLMGIDEDVLALA 320          
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Match: A0A0L0DLK6_THETB (UDENN domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DLK6_THETB)

HSP 1 Score: 54.3 bits (129), Expect = 3.130e-6
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   52 GALRELLLCLDPSNIAVVLSALLAEQFIVLLTRHPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIEAPFTGIVGVDRTALAE 315
            GALR   L L P ++A +L ALL E  +VL++  P   ++AA A  ALL PF W  V +P+VP    ++ + AP   I+G     +A+
Sbjct:  263 GALRLTTLALSPPDLADILLALLLEAKLVLVSSSPGMLSSAALAALALLAPFPWPYVFVPIVPA-VMTQYLAAPTPFIMGASPVTVAD 349          
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Match: A0A0M0J5W4_9EUKA (Calmodulin-binding protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J5W4_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 4.120e-6
Identity = 31/82 (37.80%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   64 ELLLCLDPSNIAVVLSALLAEQFIVLLTRHPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIEAPFTGIVGVDRTAL 309
            +L   LD +N+ ++ + LL EQ +VL    P     AAE L ALL PF W  V +P++P+     I++AP   +VG+D+  L
Sbjct:   59 QLFQALDANNVIMLWALLLTEQKVVLQCTQPHVLTMAAETLSALLFPFSWQHVYIPILPMRLID-ILQAPVPFLVGIDKEIL 139          
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Match: A0A8B7NCV9_HYAAZ (DENN domain-containing protein 5A-like n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NCV9_HYAAZ)

HSP 1 Score: 53.9 bits (128), Expect = 4.330e-6
Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   58 LRELLLCLDPSNIAVVLSALLAEQFIVLLTRHPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIEAPFTGIVGVDRTALAEA 318
            LREL   L P  +  +LS ++ E  I+L++   +R    AE +CAL+ PF W  V +P++P    S  ++AP   I+G+  T  A++
Sbjct:  273 LRELFSVLSPECVVQLLSCIVLENQILLVSADYYRLMLVAECMCALVLPFSWHHVYVPILPAA-LSHFLDAPVPFIMGLHATPAAKS 358          
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Match: A0A3P3YNM5_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YNM5_PLABS)

HSP 1 Score: 53.5 bits (127), Expect = 5.820e-6
Identity = 34/103 (33.01%), Postives = 53/103 (51.46%), Query Frame = 1
Query:    4 VRVSSPPPWACKHLDPGALRELLLCLDPSNIAVVLSALLAEQFIVLLTRHPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIEAPFTGIVGVDRTALA 312
            +R++ PPP A    D   L  L  CLD +N+  + +A L EQ ++L +         AE++ AL+ PF W GV +P++P    +  I +P   I GV    L+
Sbjct:  352 IRLTRPPPNALPLAD-VRLSTLFQCLDLNNVVALFTAALTEQKVLLCSTQSAALVDVAESITALIFPFYWQGVYVPVLP-RRLAEFIHSPVPFIAGVSSALLS 452          
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Match: A0A7S1CC59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CC59_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.690e-6
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   58 LRELLLCLDPSNIAVVLSALLAEQFIVLLTRHPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIE---APFTGIVGVDRTALAE 315
            LR LL  LD  ++  V+S LL EQ +++++ H      A E L +L  P EW  V +PL+P    SR++    APF  ++GV  T L E
Sbjct:  276 LRPLLAALDVGDLLTVVSCLLCEQRVLVVSAHKALLTTACEGLMSLCYPLEWVNVYVPLLP----SRLLAYLGAPFPFLIGVLSTQLKE 360          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111380.2370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7S3PM91_9STRA1.580e-1139.80Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S4BNI6_CHRCT1.750e-939.05Hypothetical protein n=3 Tax=Chrysotila carterae T... [more]
A0A7S3W695_EMIHU3.020e-937.96Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A6V4EW16_9EUKA3.400e-739.33Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A6T8DPZ6_9EUKA3.470e-739.33Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A0L0DLK6_THETB3.130e-638.64UDENN domain-containing protein n=1 Tax=Thecamonas... [more]
A0A0M0J5W4_9EUKA4.120e-637.80Calmodulin-binding protein n=1 Tax=Chrysochromulin... [more]
A0A8B7NCV9_HYAAZ4.330e-634.48DENN domain-containing protein 5A-like n=2 Tax=Hya... [more]
A0A3P3YNM5_PLABS5.820e-633.01Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A7S1CC59_9STRA7.690e-638.20Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111380contigM-pyrifera_M_contig111380:241..561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.5
Seed ortholog evalue5.7e-07
Seed eggNOG ortholog1048829.XP_002793451.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain always found downstream of DENN domain, found in a variety of signalling proteins
EggNOG OGs20D39@147545,2CMMH@1,2QQUM@2759,39J98@33154,3B1RK@33183,3FKFK@34383,3NXDK@4751,3QNGW@4890
COG Functional cat.S
Best tax levelOnygenales
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.2853484-CDS-M-pyrifera_M_contig111380:240..5611622815626.2853484-CDS-M-pyrifera_M_contig111380:240..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111380 241..561 -
1692277493.8654516-CDS-M-pyrifera_M_contig111380:240..5611692277493.8654516-CDS-M-pyrifera_M_contig111380:240..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111380 241..561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111380.2370.1prot_M-pyrifera_M_contig111380.2370.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111380 241..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111380.2370.1

>prot_M-pyrifera_M_contig111380.2370.1 ID=prot_M-pyrifera_M_contig111380.2370.1|Name=mRNA_M-pyrifera_M_contig111380.2370.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
VVRVSSPPPWACKHLDPGALRELLLCLDPSNIAVVLSALLAEQFIVLLTR
HPWRAAAAAEALCALLCPFEWAGVSLPLVPVPYFSRIIEAPFTGIVGVDR
TALAEAP
back to top

mRNA from alignment at M-pyrifera_M_contig111380:241..561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111380.2370.1 ID=mRNA_M-pyrifera_M_contig111380.2370.1|Name=mRNA_M-pyrifera_M_contig111380.2370.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig111380:241..561- (Macrocystis pyrifera P11B4 male)
GTTGTACGAGTGTCCTCTCCACCACCTTGGGCTTGCAAACACCTTGATCC TGGAGCATTGAGAGAACTTCTTTTGTGTCTTGACCCATCCAATATTGCTG TTGTTTTGTCTGCACTCCTGGCAGAACAATTCATCGTTCTCCTTACAAGA CATCCATGGAGAGCTGCTGCAGCTGCAGAAGCATTGTGTGCCTTACTCTG CCCTTTTGAATGGGCTGGTGTCTCTCTTCCTCTTGTCCCTGTGCCATACT TTTCAAGAATCATCGAAGCACCATTTACAGGAATTGTTGGAGTGGATCGA ACAGCTCTTGCCGAAGCTCCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111380:241..561-

>mRNA_M-pyrifera_M_contig111380.2370.1 ID=mRNA_M-pyrifera_M_contig111380.2370.1|Name=mRNA_M-pyrifera_M_contig111380.2370.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig111380:241..561- (Macrocystis pyrifera P11B4 male)
GTTGTACGAGTGTCCTCTCCACCACCTTGGGCTTGCAAACACCTTGATCC
TGGAGCATTGAGAGAACTTCTTTTGTGTCTTGACCCATCCAATATTGCTG
TTGTTTTGTCTGCACTCCTGGCAGAACAATTCATCGTTCTCCTTACAAGA
CATCCATGGAGAGCTGCTGCAGCTGCAGAAGCATTGTGTGCCTTACTCTG
CCCTTTTGAATGGGCTGGTGTCTCTCTTCCTCTTGTCCCTGTGCCATACT
TTTCAAGAATCATCGAAGCACCATTTACAGGAATTGTTGGAGTGGATCGA
ACAGCTCTTGCCGAAGCTCCAGTTGTACGAGTGTCCTCTCCACCACCTTG
GGCTTGCAAACACCTTGATCCTGGAGCATTGAGAGAACTTCTTTTGTGTC
TTGACCCATCCAATATTGCTGTTGTTTTGTCTGCACTCCTGGCAGAACAA
TTCATCGTTCTCCTTACAAGACATCCATGGAGAGCTGCTGCAGCTGCAGA
AGCATTGTGTGCCTTACTCTGCCCTTTTGAATGGGCTGGTGTCTCTCTTC
CTCTTGTCCCTGTGCCATACTTTTCAAGAATCATCGAAGCACCATTTACA
GGAATTGTTGGAGTGGATCGAACAGCTCTTGCCGAAGCTCCA
back to top