mRNA_M-pyrifera_M_contig111352.2366.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111352.2366.1
Unique NamemRNA_M-pyrifera_M_contig111352.2366.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111352.2366.1 vs. uniprot
Match: A0A5A8DEP8_CAFRO (USP domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DEP8_CAFRO)

HSP 1 Score: 109 bits (273), Expect = 1.480e-24
Identity = 61/175 (34.86%), Postives = 85/175 (48.57%), Query Frame = 1 
Query:    1 PSRIVIRLHAEAPLWELRAGFAAKLGVDATRVRLAFGGKTLGDEDSGKTLAEANIRDGVTVNASYAPAPRKWRFPLAQDDKAELRNARLTAPAERALMLVFSRFCNEDGLMSKSDIRSYFRACGITDARNLGDERLRQIFSGVNTTPDGAMTPYGFSQFYAHAALQRVEKAYDDF 525
            P++  +RL   A + E+R   A  LG      RLA  GK    E + ++L +  I+   TV  S           LA    ++ R+A+LT  AE+ +M +F RFCNEDGLM     R + R  G++D +NL D RL ++F      P G +   GF QFY  AA  R      DF
Sbjct: 1257 PAKFRLRLPGAATVSEMRGVLAEFLGFSPAVFRLAVAGKVWSPEQNSRSLTQMGIKTADTVLLSLKIQRETTAPLLANPSVSDQRSAKLTPAAEKVVMHIFHRFCNEDGLMGIPHFRDFCRGAGVSDEQNLSDSRLGEVFRNAELDPSGMLALKGFIQFYTEAAFTRPGNVLSDF 1431
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111352.2366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8DEP8_CAFRO1.480e-2434.86USP domain-containing protein n=5 Tax=Cafeteria ro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111352contigM-pyrifera_M_contig111352:14..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.1221-CDS-M-pyrifera_M_contig111352:13..5411622815626.1221-CDS-M-pyrifera_M_contig111352:13..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111352 14..541 -
1692277493.8111236-CDS-M-pyrifera_M_contig111352:13..5411692277493.8111236-CDS-M-pyrifera_M_contig111352:13..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111352 14..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111352.2366.1prot_M-pyrifera_M_contig111352.2366.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111352 14..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111352.2366.1

>prot_M-pyrifera_M_contig111352.2366.1 ID=prot_M-pyrifera_M_contig111352.2366.1|Name=mRNA_M-pyrifera_M_contig111352.2366.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
PSRIVIRLHAEAPLWELRAGFAAKLGVDATRVRLAFGGKTLGDEDSGKTL
AEANIRDGVTVNASYAPAPRKWRFPLAQDDKAELRNARLTAPAERALMLV
FSRFCNEDGLMSKSDIRSYFRACGITDARNLGDERLRQIFSGVNTTPDGA
MTPYGFSQFYAHAALQRVEKAYDDFV
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mRNA from alignment at M-pyrifera_M_contig111352:14..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111352.2366.1 ID=mRNA_M-pyrifera_M_contig111352.2366.1|Name=mRNA_M-pyrifera_M_contig111352.2366.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig111352:14..541- (Macrocystis pyrifera P11B4 male)
CCCAGCAGGATTGTAATTCGCCTTCATGCTGAAGCACCTCTTTGGGAGCT
TCGTGCAGGATTTGCAGCCAAGCTTGGTGTTGATGCGACAAGAGTACGTC
TTGCCTTTGGTGGAAAGACATTGGGAGATGAGGACTCTGGCAAGACATTG
GCAGAAGCCAACATTCGTGATGGTGTGACTGTGAATGCTTCATATGCACC
AGCACCTCGTAAATGGCGTTTCCCTCTTGCACAAGATGATAAGGCTGAAT
TGCGCAATGCACGATTGACTGCACCAGCAGAACGTGCTTTGATGTTGGTG
TTTTCTCGCTTTTGCAATGAAGATGGTTTGATGTCAAAATCTGACATTCG
TTCCTACTTCCGTGCTTGTGGAATTACGGATGCTCGAAACTTGGGTGATG
AGCGCTTGCGGCAAATCTTTTCTGGAGTTAACACAACTCCTGATGGAGCG
ATGACACCATATGGTTTTTCGCAATTTTATGCACACGCAGCATTGCAACG
AGTGGAAAAAGCATATGATGACTTTGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111352:14..541-

>mRNA_M-pyrifera_M_contig111352.2366.1 ID=mRNA_M-pyrifera_M_contig111352.2366.1|Name=mRNA_M-pyrifera_M_contig111352.2366.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig111352:14..541- (Macrocystis pyrifera P11B4 male)
CCCAGCAGGATTGTAATTCGCCTTCATGCTGAAGCACCTCTTTGGGAGCT
TCGTGCAGGATTTGCAGCCAAGCTTGGTGTTGATGCGACAAGAGTACGTC
TTGCCTTTGGTGGAAAGACATTGGGAGATGAGGACTCTGGCAAGACATTG
GCAGAAGCCAACATTCGTGATGGTGTGACTGTGAATGCTTCATATGCACC
AGCACCTCGTAAATGGCGTTTCCCTCTTGCACAAGATGATAAGGCTGAAT
TGCGCAATGCACGATTGACTGCACCAGCAGAACGTGCTTTGATGTTGGTG
TTTTCTCGCTTTTGCAATGAAGATGGTTTGATGTCAAAATCTGACATTCG
TTCCTACTTCCGTGCTTGTGGAATTACGGATGCTCGAAACTTGGGTGATG
AGCGCTTGCGGCAAATCTTTTCTGGAGTTAACACAACTCCTGATGGAGCG
ATGACACCATATGGTTTTTCGCAATTTTATGCACACGCAGCATTGCAACG
AGTGGAAAAAGCATATGATGACTTTGTCCCCAGCAGGATTGTAATTCGCC
TTCATGCTGAAGCACCTCTTTGGGAGCTTCGTGCAGGATTTGCAGCCAAG
CTTGGTGTTGATGCGACAAGAGTACGTCTTGCCTTTGGTGGAAAGACATT
GGGAGATGAGGACTCTGGCAAGACATTGGCAGAAGCCAACATTCGTGATG
GTGTGACTGTGAATGCTTCATATGCACCAGCACCTCGTAAATGGCGTTTC
CCTCTTGCACAAGATGATAAGGCTGAATTGCGCAATGCACGATTGACTGC
ACCAGCAGAACGTGCTTTGATGTTGGTGTTTTCTCGCTTTTGCAATGAAG
ATGGTTTGATGTCAAAATCTGACATTCGTTCCTACTTCCGTGCTTGTGGA
ATTACGGATGCTCGAAACTTGGGTGATGAGCGCTTGCGGCAAATCTTTTC
TGGAGTTAACACAACTCCTGATGGAGCGATGACACCATATGGTTTTTCGC
AATTTTATGCACACGCAGCATTGCAACGAGTGGAAAAAGCATATGATGAC
TTTGTC
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