mRNA_M-pyrifera_M_contig111349.2365.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111349.2365.1
Unique NamemRNA_M-pyrifera_M_contig111349.2365.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Match: A0A7S4QWG3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QWG3_9DINO)

HSP 1 Score: 76.3 bits (186), Expect = 2.310e-13
Identity = 63/161 (39.13%), Postives = 91/161 (56.52%), Query Frame = 1
Query:    1 PSDSLRRVIGRGGATIKRIQEESGANLNVD-----SGEPSGVTIRGDDPSQVDRAVEMVEEIL------RSVAEDDAAAAAAPSETIALPSGDAAGLIIGRGGQTIRKLQDDSGARIEIL-NDGPSRQ---VRVSGPDDASVAAAVEAIRTLLASAREDEG 438
            P  S+  +IG+GG TIK+++E+SGA L +D     S  P  +++ G  PS+V  AV +V EIL      +       A A A SE + +P  D AG IIGRGG+ IR+L+ DSGA I++  N   SR+   VR+SG    SV++A   I+ ++    E  G
Sbjct:  529 PRTSIGMIIGKGGETIKKLEEQSGARLRLDGHKDGSTGPGVLSVSGS-PSRVSEAVRLVREILDRTPPQKGAGRPRRAEAGAASEVLEVPQ-DRAGAIIGRGGEVIRRLEADSGASIKLEGNKRGSREPCLVRISG-SPGSVSSARALIQEIVGQELEGRG 686          
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Match: A0A2K3DM06_CHLRE (WW domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DM06_CHLRE)

HSP 1 Score: 74.3 bits (181), Expect = 8.740e-13
Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    1 PSDSLRRVIGRGGATIKRIQEESGANLNVDSGEPSG--VTIRGDDPSQVDRAVEMVEEILRSVAEDDAAAAAAPSETIALPSGDAAGLIIGRGGQTIRKLQDDSGARIEILND---GPSRQVRVSGPDDA 375
            P D + RVIGR GATI+ ++  +G  + VD   P    VTI G    +V+RA   V +++     D A A     +T+  P G   G +IGRGG+TIR LQ  SGA I +  D   G +RQ+ +SG  DA
Sbjct:    7 PPDKVGRVIGRAGATIRDLEASTGTRIQVDHKAPGDKPVTISGR-ADEVERAKRQVLDLISGHGSDAAPAPGEAQKTLECPQG-IVGRVIGRGGETIRTLQQASGAHILVNQDFPEGAARQITISGSQDA 134          
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Match: A8HYR6_CHLRE (C1, subunit of the circadian RNA-binding protein CHLAMY 1 n=3 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HYR6_CHLRE)

HSP 1 Score: 74.3 bits (181), Expect = 1.020e-12
Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    1 PSDSLRRVIGRGGATIKRIQEESGANLNVDSGEPSG--VTIRGDDPSQVDRAVEMVEEILRSVAEDDAAAAAAPSETIALPSGDAAGLIIGRGGQTIRKLQDDSGARIEILND---GPSRQVRVSGPDDA 375
            P D + RVIGR GATI+ ++  +G  + VD   P    VTI G    +V+RA   V +++     D A A     +T+  P G   G +IGRGG+TIR LQ  SGA I +  D   G +RQ+ +SG  DA
Sbjct:  129 PPDKVGRVIGRAGATIRDLEASTGTRIQVDHKAPGDKPVTISGR-ADEVERAKRQVLDLISGHGSDAAPAPGEAQKTLECPQG-IVGRVIGRGGETIRTLQQASGAHILVNQDFPEGAARQITISGSQDA 256          
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Match: A0A7S3UBS0_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UBS0_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 3.430e-12
Identity = 46/132 (34.85%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    1 PSDSLRRVIGRGGATIKRIQEESGANLNVDSGEPSG----VTIRGDDPSQVDRAVEMVEEILR----SVAEDDAAAAAAPSETIALPSGDAAGLIIGRGGQTIRKLQDDSGARIEILNDGPSRQVRVSGPDD 372
            P+  + R+IG+GG TIK +Q +SGA++++D   P G    +T++G    +V+R V++V +++R    + A+  AA     +  +  P     G +IGRGG+TI++LQ  SGARI+I       ++ +SG  D
Sbjct:   78 PAGIVGRIIGKGGETIKALQLQSGAHISIDQDYPEGMPRKITVKGK-KEKVERGVKLVHDLIRGGPGATAQVLAAVPGGTTHVVECPKA-TIGRVIGRGGETIKRLQATSGARIQINQTEEPMKITISGHQD 207          
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Match: A0A061RZW2_9CHLO (Far upstream element-binding protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZW2_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 4.900e-12
Identity = 54/137 (39.42%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    1 PSDSLRRVIGRGGATIKRIQEESGANLNVD----SGEPSGVTIRGDDPSQVDRAVEMVEEILRSVAEDDAAAAAAPS-----ETIALPSGDAAGLIIGRGGQTIRKLQDDSGARIEI---LNDGPSRQVRVSGPDDA 375
            P   + RVIG+GG TI+ +Q  SGA + +D     G+P  VT+ G     V  A +M+ +I+    +  A A  APS     +T+  P G   G +IGRGG+TIR LQ  SGA I I     +G  RQV + G  DA
Sbjct:  162 PHALIGRVIGKGGETIRDLQNSSGARIQIDHSGDDGQPRAVTVTGSGQC-VAMAKKMILDIIAQGQDPTAGAPGAPSAGEVKQTVNCPPG-IVGRVIGRGGETIRALQTSSGAHISIDQNFPEGVDRQVHIQGRPDA 296          
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Match: A0A5B8MRG3_9CHLO (Uncharacterized protein n=4 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MRG3_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 5.510e-12
Identity = 52/147 (35.37%), Postives = 88/147 (59.86%), Query Frame = 1
Query:    1 PSDSLRRVIGRGGATIKRIQEESGANLNVDSG-EPSGVTIRGDDPSQVDRAVEMVEEILRSVAEDDAAAAAAPS-ETIALPSGDAAGLIIGRGGQTIRKLQDDSGARIEILNDGPSRQVRVSGPDDASVAAAVEAIRTLLASAREDE 435
            P  ++  +IG+GG T+++I++++GA +++    +P  V I GD  S VD+A+E V+++ R   + +         ET+  P     G IIG+GG T+RK++ D+GAR++I  D    QV +SG D  SV  A+EA++ L   A++ E
Sbjct: 1579 PRHTVGIIIGKGGTTVRKIEKDTGARVDIRQDCDPCQVHISGDRES-VDKALEAVKDLRRRAKDGEXXXXXXXVVETLDCPR-HCVGAIIGKGGTTVRKIEKDTGARVDIRQDCDPCQVHISG-DRESVDKALEAVKDLRRRAKDGE 1722          
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Match: A0A1Y2GB42_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GB42_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 1.910e-11
Identity = 54/140 (38.57%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    1 PSDSLRRVIGRGGATIKRIQEESGANLNV-----DSGEPSG-VTIRGDDPSQVDRAVEMVEEILRSVAE---DDAAAAAAPSETIALPSGDAAGLIIGRGGQTIRKLQDDSGARIEILNDGPS------RQVRVSGPDDA 375
            PS  +  VIGRGG TI+ +Q+ SGA + V     D   P+  V+I GDD S ++RA  +VEEI+  +A      +     P  TI +P  DA GL+IGRGG+T+++LQ  S A+I++    P+      R + + GP +A
Sbjct:  225 PSTKVGLVIGRGGETIRDLQDRSGARIAVTPTPNDHNSPNRTVSITGDD-SAIERAKALVEEIVSDMAPRAGHSSGYQTTPPVTITVPQ-DAIGLVIGRGGETVKQLQIQSRAKIQVQQVDPAMPPPTDRTINLYGPPEA 362          
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Match: UPI001425A69A (far upstream element-binding protein 1-like isoform X1 n=3 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A69A)

HSP 1 Score: 70.5 bits (171), Expect = 2.370e-11
Identity = 57/162 (35.19%), Postives = 82/162 (50.62%), Query Frame = 1
Query:    1 PSDSLRRVIGRGGATIKRIQEESGANLNVDSGEPSGVTIR-----GDDPSQVDRAVEMVEEILRSVAED---DAAAAAAPSETIALPSGD--------AAGLIIGRGGQTIRKLQDDSGARIEILND--GPSRQVRVSGPDDASVAAAVEAIRTLLASARED 432
            P + +  VIG+GG TI+ +Q+E G  + +    P  + I        +PS+V  A   V E+L S   D          P +    P           A G++IGR G+TI+K+Q +SGAR++  +D  GP R   VSGP+DA + AA E I  L+ASA  D
Sbjct:  181 PGNKVGLVIGKGGETIRTLQDEIGVRMTMIQDGPQNIGIDKPLRVSGEPSKVQEAFRKVHELLESKGNDLGNRGPGMGNPFQRRGPPPNGREVPVPKFAVGIVIGRQGETIKKIQAESGARVQFQDDDGGPERIAIVSGPEDAVMNAAGE-IEKLIASANRD 341          
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Match: M3YMP1_MUSPF (Uncharacterized protein n=32 Tax=Laurasiatheria TaxID=314145 RepID=M3YMP1_MUSPF)

HSP 1 Score: 69.3 bits (168), Expect = 5.830e-11
Identity = 60/163 (36.81%), Postives = 89/163 (54.60%), Query Frame = 1
Query:    1 PSDSLRRVIGRGGATIKRIQEESGANLNV--DSGEPSG----VTIRGDDPSQVDRAVEMVEEILRS--------VAEDDAAAAAAPSETIALPSGDAAGLIIGRGGQTIRKLQDDSGARIEILND---GPSRQVRVSGPDDASVAAAVEAIRTLLASAREDEG 438
            P+  +  VIG+GG TIK++QE +G  + +  D   P+G    + I GD P +V +A EMV EI+R         V  D  A A   S  +++P   A G++IGR G+ I+K+Q+D+G RI+   D    P R  +V GP D    AA   I  L+ +A+E +G
Sbjct:  170 PASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGD-PFKVQQAREMVLEIIREKDQADFRGVRGDFGARAGGGSIEVSVPRF-AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAA-HVINELILTAQERDG 329          
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Match: A0A1U7RC03_MESAU (far upstream element-binding protein 3 isoform X1 n=39 Tax=Boreoeutheria TaxID=1437010 RepID=A0A1U7RC03_MESAU)

HSP 1 Score: 69.3 bits (168), Expect = 5.830e-11
Identity = 60/163 (36.81%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    1 PSDSLRRVIGRGGATIKRIQEESGANLNV--DSGEPSG----VTIRGDDPSQVDRAVEMVEEILRS--------VAEDDAAAAAAPSETIALPSGDAAGLIIGRGGQTIRKLQDDSGARIEILND---GPSRQVRVSGPDDASVAAAVEAIRTLLASAREDEG 438
            P+  +  VIG+GG TIK++QE +G  + +  D   P+G    + I GD P +V +A EMV EI+R         V  D A+ A   S  +++P   A G++IGR G+ I+K+Q+D+G RI+   D    P R  +V GP D    AA   I  L+ +A+E +G
Sbjct:  170 PASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGD-PFKVQQAREMVLEIIREKDQADFRGVRGDFASRAGGGSIEVSVPRF-AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAA-HIINELILTAQERDG 329          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111349.2365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4QWG3_9DINO2.310e-1339.13Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A2K3DM06_CHLRE8.740e-1340.00WW domain-containing protein n=3 Tax=Chlamydomonas... [more]
A8HYR6_CHLRE1.020e-1240.00C1, subunit of the circadian RNA-binding protein C... [more]
A0A7S3UBS0_9CHLO3.430e-1234.85Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A061RZW2_9CHLO4.900e-1239.42Far upstream element-binding protein n=2 Tax=Tetra... [more]
A0A5B8MRG3_9CHLO5.510e-1235.37Uncharacterized protein n=4 Tax=Chloropicon primus... [more]
A0A1Y2GB42_9FUNG1.910e-1138.57Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
UPI001425A69A2.370e-1135.19far upstream element-binding protein 1-like isofor... [more]
M3YMP1_MUSPF5.830e-1136.81Uncharacterized protein n=32 Tax=Laurasiatheria Ta... [more]
A0A1U7RC03_MESAU5.830e-1136.81far upstream element-binding protein 3 isoform X1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111349contigM-pyrifera_M_contig111349:6..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue3e-11
Seed eggNOG ortholog3055.EDP08399
KEGG koko:K13210
Hectar predicted targeting categoryother localisation
EggNOG free text desc.K homology RNA-binding domain
EggNOG OGs34I34@3041,37VFX@33090,KOG1676@1,KOG1676@2759
COG Functional cat.A
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03041
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.0869272-CDS-M-pyrifera_M_contig111349:5..4431622815626.0869272-CDS-M-pyrifera_M_contig111349:5..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111349 6..443 +
1692277493.7924185-CDS-M-pyrifera_M_contig111349:5..4431692277493.7924185-CDS-M-pyrifera_M_contig111349:5..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111349 6..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111349.2365.1prot_M-pyrifera_M_contig111349.2365.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111349 6..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111349.2365.1

>prot_M-pyrifera_M_contig111349.2365.1 ID=prot_M-pyrifera_M_contig111349.2365.1|Name=mRNA_M-pyrifera_M_contig111349.2365.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
PSDSLRRVIGRGGATIKRIQEESGANLNVDSGEPSGVTIRGDDPSQVDRA
VEMVEEILRSVAEDDAAAAAAPSETIALPSGDAAGLIIGRGGQTIRKLQD
DSGARIEILNDGPSRQVRVSGPDDASVAAAVEAIRTLLASAREDEG
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mRNA from alignment at M-pyrifera_M_contig111349:6..443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111349.2365.1 ID=mRNA_M-pyrifera_M_contig111349.2365.1|Name=mRNA_M-pyrifera_M_contig111349.2365.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig111349:6..443+ (Macrocystis pyrifera P11B4 male)
CCTTCTGATAGTCTTCGTCGTGTCATTGGTCGTGGCGGAGCTACGATCAA ACGAATTCAAGAAGAAAGTGGAGCCAACTTGAATGTTGATTCTGGAGAAC CTTCTGGTGTAACAATTCGAGGTGATGATCCAAGTCAAGTTGACCGTGCA GTTGAAATGGTGGAAGAAATTTTGCGCTCTGTTGCAGAAGATGATGCAGC TGCAGCTGCAGCACCATCTGAAACTATTGCACTTCCATCTGGTGATGCAG CAGGATTGATTATTGGTCGAGGGGGTCAAACAATCCGAAAGCTACAAGAT GATTCTGGAGCTCGGATTGAAATCTTGAATGATGGTCCCAGCCGTCAAGT TCGTGTCTCTGGTCCAGATGATGCAAGTGTTGCAGCAGCTGTGGAAGCGA TTCGAACACTTCTTGCATCTGCACGTGAAGATGAAGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111349:6..443+

>mRNA_M-pyrifera_M_contig111349.2365.1 ID=mRNA_M-pyrifera_M_contig111349.2365.1|Name=mRNA_M-pyrifera_M_contig111349.2365.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig111349:6..443+ (Macrocystis pyrifera P11B4 male)
CCTTCTGATAGTCTTCGTCGTGTCATTGGTCGTGGCGGAGCTACGATCAA
ACGAATTCAAGAAGAAAGTGGAGCCAACTTGAATGTTGATTCTGGAGAAC
CTTCTGGTGTAACAATTCGAGGTGATGATCCAAGTCAAGTTGACCGTGCA
GTTGAAATGGTGGAAGAAATTTTGCGCTCTGTTGCAGAAGATGATGCAGC
TGCAGCTGCAGCACCATCTGAAACTATTGCACTTCCATCTGGTGATGCAG
CAGGATTGATTATTGGTCGAGGGGGTCAAACAATCCGAAAGCTACAAGAT
GATTCTGGAGCTCGGATTGAAATCTTGAATGATGGTCCCAGCCGTCAAGT
TCGTGTCTCTGGTCCAGATGATGCAAGTGTTGCAGCAGCTGTGGAAGCGA
TTCGAACACTTCTTGCATCTGCACGTGAAGATGAAGGACCTTCTGATAGT
CTTCGTCGTGTCATTGGTCGTGGCGGAGCTACGATCAAACGAATTCAAGA
AGAAAGTGGAGCCAACTTGAATGTTGATTCTGGAGAACCTTCTGGTGTAA
CAATTCGAGGTGATGATCCAAGTCAAGTTGACCGTGCAGTTGAAATGGTG
GAAGAAATTTTGCGCTCTGTTGCAGAAGATGATGCAGCTGCAGCTGCAGC
ACCATCTGAAACTATTGCACTTCCATCTGGTGATGCAGCAGGATTGATTA
TTGGTCGAGGGGGTCAAACAATCCGAAAGCTACAAGATGATTCTGGAGCT
CGGATTGAAATCTTGAATGATGGTCCCAGCCGTCAAGTTCGTGTCTCTGG
TCCAGATGATGCAAGTGTTGCAGCAGCTGTGGAAGCGATTCGAACACTTC
TTGCATCTGCACGTGAAGATGAAGGA
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