mRNA_M-pyrifera_M_contig111328.2363.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111328.2363.1
Unique NamemRNA_M-pyrifera_M_contig111328.2363.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111328.2363.1 vs. uniprot
Match: A0A7V3NQB9_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V3NQB9_9DELT)

HSP 1 Score: 92.0 bits (227), Expect = 3.140e-19
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 1 
Query:   22 LIPGTPMPAGVILQQSNSCLGMALYRGRLYLAFGTIPLHYPWMSKHMLILSSPDCGQSWVREIELWHRTDMREPHFWVQNGQLFFSYFKPGTSPIPIEPHFANHLRFRSQGNWEDLGKWGQDGEIPRQVGTHDGVAY 432
            ++PG  +PA V  Q+SN+ L +A++ GRL+LAF T P H+     H  I+SSPD G++W  E E++  +DMREP F V   +L +  F+ G +     P     +  +S G W +  K  +DG +  +    +G AY
Sbjct:   30 VVPGPNLPAEVKCQRSNNNLDIAMFEGRLFLAFRTAPTHFASRMVHHYIISSPDFGKTWDFEAEVFMGSDMREPRFLVLGDRLIYYNFQAGKNMFSFAPKHIWAMERKSLGVWTEPRKVFKDGCVLWRAKVINGTAY 166
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111328.2363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7V3NQB9_9DELT3.140e-1935.77Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111328contigM-pyrifera_M_contig111328:63..555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.8884501-CDS-M-pyrifera_M_contig111328:62..2851622815625.8884501-CDS-M-pyrifera_M_contig111328:62..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111328 63..285 +
1692277493.663143-CDS-M-pyrifera_M_contig111328:62..2851692277493.663143-CDS-M-pyrifera_M_contig111328:62..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111328 63..285 +
1622815625.907027-CDS-M-pyrifera_M_contig111328:346..5551622815625.907027-CDS-M-pyrifera_M_contig111328:346..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111328 347..555 +
1692277493.673278-CDS-M-pyrifera_M_contig111328:346..5551692277493.673278-CDS-M-pyrifera_M_contig111328:346..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111328 347..555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111328.2363.1prot_M-pyrifera_M_contig111328.2363.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111328 63..555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111328.2363.1

>prot_M-pyrifera_M_contig111328.2363.1 ID=prot_M-pyrifera_M_contig111328.2363.1|Name=mRNA_M-pyrifera_M_contig111328.2363.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
SVSDATYLIPGTPMPAGVILQQSNSCLGMALYRGRLYLAFGTIPLHYPWM
SKHMLILSSPDCGQSWVREIELWHRTDMREPHFWVQNGQLFFSYFKPGTS
PIPIEPHFANHLRFRSQGNWEDLGKWGQDGEIPRQVGTHDGVAY
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mRNA from alignment at M-pyrifera_M_contig111328:63..555+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111328.2363.1 ID=mRNA_M-pyrifera_M_contig111328.2363.1|Name=mRNA_M-pyrifera_M_contig111328.2363.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=493bp|location=Sequence derived from alignment at M-pyrifera_M_contig111328:63..555+ (Macrocystis pyrifera P11B4 male)
TCCGTGTCAGATGCGACCTACCTCATCCCTGGCACTCCAATGCCAGCGGG
TGTCATTTTGCAGCAGTCCAACAGCTGTCTGGGCATGGCCCTGTATCGTG
GACGCCTCTACCTGGCCTTTGGGACAATTCCTTTGCACTATCCGTGGATG
TCGAAACACATGCTCATCCTGTCCTCCCCCGATTGCGGCCAATCGTGGGT
ACGCGAAATCGAACTCTGGCACCGTACGTGCTCGCACTCCTCTGGGTTCC
ACCACCCACACCTCACCCGGGCTCCCTATGTCAGGCACGGACATGCGCGA
GCCACATTTCTGGGTGCAAAACGGCCAGCTGTTCTTTTCGTACTTCAAGC
CGGGCACCAGCCCGATCCCAATCGAACCACATTTCGCGAACCATCTTCGA
TTCCGCAGCCAGGGCAACTGGGAGGATCTTGGGAAGTGGGGCCAGGATGG
CGAGATCCCGCGGCAAGTGGGCACTCACGATGGCGTCGCGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111328:63..555+

>mRNA_M-pyrifera_M_contig111328.2363.1 ID=mRNA_M-pyrifera_M_contig111328.2363.1|Name=mRNA_M-pyrifera_M_contig111328.2363.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig111328:63..555+ (Macrocystis pyrifera P11B4 male)
TCCGTGTCAGATGCGACCTACCTCATCCCTGGCACTCCAATGCCAGCGGG
TGTCATTTTGCAGCAGTCCAACAGCTGTCTGGGCATGGCCCTGTATCGTG
GACGCCTCTACCTGGCCTTTGGGACAATTCCTTTGCACTATCCGTGGATG
TCGAAACACATGCTCATCCTGTCCTCCCCCGATTGCGGCCAATCGTGGGT
ACGCGAAATCGAACTCTGGCACCTCCGTGTCAGATGCGACCTACCTCATC
CCTGGCACTCCAATGCCAGCGGGTGTCATTTTGCAGCAGTCCAACAGCTG
TCTGGGCATGGCCCTGTATCGTGGACGCCTCTACCTGGCCTTTGGGACAA
TTCCTTTGCACTATCCGTGGATGTCGAAACACATGCTCATCCTGTCCTCC
CCCGATTGCGGCCAATCGTGGGTACGCGAAATCGAACTCTGGCACCGCAC
GGACATGCGCGAGCCACATTTCTGGGTGCAAAACGGCCAGCTGTTCTTTT
CGTACTTCAAGCCGGGCACCAGCCCGATCCCAATCGAACCACATTTCGCG
AACCATCTTCGATTCCGCAGCCAGGGCAACTGGGAGGATCTTGGGAAGTG
GGGCCAGGATGGCGAGATCCCGCGGCAAGTGGGCACTCACGATGGCGTCG
CGTACGCACGGACATGCGCGAGCCACATTTCTGGGTGCAAAACGGCCAGC
TGTTCTTTTCGTACTTCAAGCCGGGCACCAGCCCGATCCCAATCGAACCA
CATTTCGCGAACCATCTTCGATTCCGCAGCCAGGGCAACTGGGAGGATCT
TGGGAAGTGGGGCCAGGATGGCGAGATCCCGCGGCAAGTGGGCACTCACG
ATGGCGTCGCGTAC
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