mRNA_M-pyrifera_M_contig11130.2358.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11130.2358.1
Unique NamemRNA_M-pyrifera_M_contig11130.2358.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11130.2358.1 vs. uniprot
Match: D7FK56_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK56_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 4.570e-36
Identity = 160/385 (41.56%), Postives = 183/385 (47.53%), Query Frame = 1 
Query:    1 PFLPGLFLLVLNLVRLSKV-----LASSLTYLDARDNRVAGPADAHAPYLAALGRLKTLLLMSPGGG---QPNPICASRGYRRGVFDAARSLLTLDGTVDETVDGXXXXXXXXXXXXXXXXXXXXXXXXXXGDHAPSGTAANSAAANGDVTLAGVQPALDHEVEFQAAVGAGVGEAGAALEEVP-TPRFDAVADRFRSRRGRMM-------------------------RGGDRRAGEEEGDSEVSFGGGSMSSFGAAGSEGWSEGGNGQMREGVGVGGSRK-----GGAGALLQDLEEAAVVDGEVTRGXXXXXXXXXXXXRKGWGRGTAFAGHVAPAGKEGVSGVAGPLGDDVAEEHGLLSRLRSVAQEARLEVMDSRLQDLH 1038
            PFLPGL  L++   RL+ +     LASSLT+LDARDNR+AGPA AHAP+LAALGRL++L L S G G   QPNPICA RGYR  VF AARSL TLDG                     XXXXXXXXXXXXX          ++ AA+        +P  D     + A+      A  A EEVP  PRFDA+A RFR R                              R   + AG E   S+                 GWSEG    +RE    G         G AG +  +   A  V G    G              G GRG            +G SGV   LG+DVAEEHGLLSRLRSVAQEARLEVMDSRLQDLH
Sbjct:  133 PFLPGLRRLLVPYNRLTSLDGVQALASSLTHLDARDNRIAGPAGAHAPHLAALGRLESLALASVGRGRRVQPNPICACRGYREDVFAAARSLKTLDGENASFFFEDRETAATPAEAAAXXXXXXXXXXXXXXXXXXXDVTEDTPAAS--------EPGGDRNAAAETAIPVAAVTALVAPEEVPIAPRFDALAGRFRHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRVAVQSAGVESSSSDA----------------GWSEGDGDGLRESHAEGFDADSFGVVGSAGRVDTEETAARAVPGRRKDG--------------GGGRGIF----------DGESGVREALGEDVAEEHGLLSRLRSVAQEARLEVMDSRLQDLH 469
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BLAST of mRNA_M-pyrifera_M_contig11130.2358.1 vs. uniprot
Match: A0A6H5KTU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU3_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.040e-28
Identity = 162/390 (41.54%), Postives = 184/390 (47.18%), Query Frame = 1 
Query:    1 PFLPGLFLLVLNLVRLSKV-----LASSLTYLDARDNRVAGPADAHAPYLAALGRLKTLLLMSPGGG---QPNPICASRGYRRGVFDAARSLLTLDG-----------TVDETVDGXXXXXXXXXXXXXXXXXXXXXXXXXXGDHAPSGTAANSAAANGDVTLAGVQPALDH--EVEFQAAVGAGVGEAGAALEEVPTPRFDAVADRFRSRRGRMMRGGDRR---------------------AGEEEGDSEVSFGGGSMSSFGAAGSEGWSEGGNGQMREGVGVGGSRKGGAGALLQDLEEAAV--VDGEVTRGXXXXXXXXXXXXRKGWGRGTAFAGHVAPAGKEGVSGVAGPLGDDVAEEHGLLSRLRSVAQEARLEVMDSRLQDLH 1038
            PFLPGL  L++   RL+ +     LASSLT+LDARDNR+AGPA AHAP+LAALGRL++L L S G G   QPNPICA RGYR  VF AARSL TLDG           T     +    XXXXXXXXXXXXXXXXXXXXXX    A       +AAA   + +A V+ A               G G                       R G    GG  R                     AG E   S+  +  G   S   + +EG+     G +  G  V             D EE A   V G  T G              G GRG            +G SGV   LG+DVAEEHGLLSRLRSVAQEARLEVMDSRLQDLH
Sbjct:   56 PFLPGLRRLLVPYNRLTSLDGVQALASSLTHLDARDNRIAGPAGAHAPHLAALGRLESLALASVGRGRRVQPNPICACRGYREEVFAAARSLKTLDGESASFVLEDRETAATPAEAAAKXXXXXXXXXXXXXXXXXXXXXXDTPAASEPRGGRNAAAETAIPVAAVRRASGPIPXXXXXXXXXCGGGXXXXXXXXXXXXXXXXXXXXXXXRPGVAAEGGGGRGRCLXXXXXXXTSSPRVAVQSAGVESSSSDAGWSEGDGDSLQESHAEGFDADSFGVVESGGRV-------------DTEETAARAVPGRRTGG--------------GGGRGNF----------DGESGVREVLGEDVAEEHGLLSRLRSVAQEARLEVMDSRLQDLH 408
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11130.2358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK56_ECTSI4.570e-3641.56Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KTU3_9PHAE2.040e-2841.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11130contigM-pyrifera_M_contig11130:400..1638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue3.8e-36
Seed eggNOG ortholog2880.D7FK56
KEGG koko:K16475
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_005765.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size1047
Cds size1047
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.6482668-CDS-M-pyrifera_M_contig11130:399..8511622815625.6482668-CDS-M-pyrifera_M_contig11130:399..851Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11130 400..851 +
1692277493.5660198-CDS-M-pyrifera_M_contig11130:399..8511692277493.5660198-CDS-M-pyrifera_M_contig11130:399..851Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11130 400..851 +
1622815625.6583116-CDS-M-pyrifera_M_contig11130:1043..16381622815625.6583116-CDS-M-pyrifera_M_contig11130:1043..1638Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11130 1044..1638 +
1692277493.5797544-CDS-M-pyrifera_M_contig11130:1043..16381692277493.5797544-CDS-M-pyrifera_M_contig11130:1043..1638Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11130 1044..1638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11130.2358.1prot_M-pyrifera_M_contig11130.2358.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11130 400..1638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11130.2358.1

>prot_M-pyrifera_M_contig11130.2358.1 ID=prot_M-pyrifera_M_contig11130.2358.1|Name=mRNA_M-pyrifera_M_contig11130.2358.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=349bp
PFLPGLFLLVLNLVRLSKVLASSLTYLDARDNRVAGPADAHAPYLAALGR
LKTLLLMSPGGGQPNPICASRGYRRGVFDAARSLLTLDGTVDETVDGTVG
GSIDGTVGGVVGETVDGAVGGTVGDHAPSGTAANSAAANGDVTLAGVQPA
LDHEVEFQAAVGAGVGEAGAALEEVPTPRFDAVADRFRSRRGRMMRGGDR
RAGEEEGDSEVSFGGGSMSSFGAAGSEGWSEGGNGQMREGVGVGGSRKGG
AGALLQDLEEAAVVDGEVTRGGGGSGGGGGGGGRKGWGRGTAFAGHVAPA
GKEGVSGVAGPLGDDVAEEHGLLSRLRSVAQEARLEVMDSRLQDLHVSE
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mRNA from alignment at M-pyrifera_M_contig11130:400..1638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11130.2358.1 ID=mRNA_M-pyrifera_M_contig11130.2358.1|Name=mRNA_M-pyrifera_M_contig11130.2358.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at M-pyrifera_M_contig11130:400..1638+ (Macrocystis pyrifera P11B4 male)
CCCTTTCTCCCCGGTTTATTTCTCCTCGTTCTGAACCTCGTTCGTCTCTC
CAAGGTGCTAGCGTCCTCCCTGACATACCTCGACGCGAGAGACAACCGAG
TCGCGGGGCCCGCGGACGCCCACGCCCCCTACCTCGCCGCCCTCGGGCGC
CTGAAAACGCTCCTCCTAATGTCTCCAGGGGGGGGGCAGCCGAACCCCAT
TTGCGCGAGCCGCGGGTATCGCCGAGGCGTTTTTGACGCCGCGCGCTCGC
TCCTGACGCTGGACGGGACTGTCGACGAGACTGTCGACGGGACTGTCGGC
GGGTCTATTGACGGGACTGTTGGAGGGGTTGTCGGCGAGACTGTGGACGG
GGCTGTAGGCGGGACTGTCGGCGATCATGCCCCCTCCGGAACTGCCGCCA
ATTCCGCAGCCGCAAACGGTGACGTCACATTGGCGGGCGTGCAGCCCGCG
TTGTCGAACGGTCGGAATGGACGAAAAGCACCCCGCGACGACCCAGCTGT
GGAGTATAGCAGGGGCAGGAACGCACTGGCTGGAACCGGCCGATTACACG
CTGCGGGCATGGTTACAAGCGGTGTCGACGGCCGCGGCGGCAGCGGTGGC
GGCGGTGGTGGTGGTAGCCGCGGTGATCTCGGCAGTTTTTCTAGGGATCA
TGAAGTCGAGTTTCAAGCTGCAGTGGGGGCGGGGGTGGGCGAGGCAGGGG
CCGCGCTCGAGGAGGTTCCCACGCCGCGTTTCGACGCTGTCGCTGATCGG
TTCCGAAGCCGCCGCGGGCGGATGATGCGCGGTGGGGACAGAAGGGCTGG
TGAGGAGGAGGGAGACAGCGAGGTGTCGTTCGGAGGGGGTTCCATGTCAT
CCTTTGGCGCGGCCGGGAGCGAAGGGTGGAGCGAAGGCGGCAACGGGCAG
ATGCGGGAAGGTGTTGGGGTTGGCGGGTCGCGGAAGGGGGGCGCGGGGGC
ACTACTGCAGGACCTCGAGGAAGCGGCCGTGGTCGACGGAGAAGTCACCA
GAGGCGGCGGCGGCAGCGGCGGCGGCGGCGGTGGCGGCGGGAGGAAGGGG
TGGGGGAGAGGTACGGCCTTTGCCGGTCACGTCGCCCCCGCTGGGAAGGA
GGGGGTCTCGGGTGTCGCCGGACCGCTTGGAGATGACGTCGCGGAAGAGC
ACGGGTTGTTGAGCAGGCTCAGGTCTGTCGCGCAGGAGGCCCGCCTGGAA
GTCATGGACAGCCGTCTGCAGGACTTGCACGTGAGTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11130:400..1638+

>mRNA_M-pyrifera_M_contig11130.2358.1 ID=mRNA_M-pyrifera_M_contig11130.2358.1|Name=mRNA_M-pyrifera_M_contig11130.2358.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2094bp|location=Sequence derived from alignment at M-pyrifera_M_contig11130:400..1638+ (Macrocystis pyrifera P11B4 male)
CCCTTTCTCCCCGGTTTATTTCTCCTCGTTCTGAACCTCGTTCGTCTCTC
CAAGGTGCTAGCGTCCTCCCTGACATACCTCGACGCGAGAGACAACCGAG
TCGCGGGGCCCGCGGACGCCCACGCCCCCTACCTCGCCGCCCTCGGGCGC
CTGAAAACGCTCCTCCTAATGTCTCCAGGGGGGGGGCAGCCGAACCCCAT
TTGCGCGAGCCGCGGGTATCGCCGAGGCGTTTTTGACGCCGCGCGCTCGC
TCCTGACGCTGGACGGGACTGTCGACGAGACTGTCGACGGGACTGTCGGC
GGGTCTATTGACGGGACTGTTGGAGGGGTTGTCGGCGAGACTGTGGACGG
GGCTGTAGGCGGGACTGTCGGCGATCATGCCCCCTCCGGAACTGCCGCCA
ATTCCGCAGCCGCAAACGGTGACGTCACATTGGCGGGCGTGCAGCCCGCG
TTCCCTTTCTCCCCGGTTTATTTCTCCTCGTTCTGAACCTCGTTCGTCTC
TCCAAGGTGCTAGCGTCCTCCCTGACATACCTCGACGCGAGAGACAACCG
AGTCGCGGGGCCCGCGGACGCCCACGCCCCCTACCTCGCCGCCCTCGGGC
GCCTGAAAACGCTCCTCCTAATGTCTCCAGGGGGGGGGCAGCCGAACCCC
ATTTGCGCGAGCCGCGGGTATCGCCGAGGCGTTTTTGACGCCGCGCGCTC
GCTCCTGACGCTGGACGGGACTGTCGACGAGACTGTCGACGGGACTGTCG
GCGGGTCTATTGACGGGACTGTTGGAGGGGTTGTCGGCGAGACTGTGGAC
GGGGCTGTAGGCGGGACTGTCGGCGATCATGCCCCCTCCGGAACTGCCGC
CAATTCCGCAGCCGCAAACGGTGACGTCACATTGGCGGGCGTGCAGCCCG
CGTTGGATCATGAAGTCGAGTTTCAAGCTGCAGTGGGGGCGGGGGTGGGC
GAGGCAGGGGCCGCGCTCGAGGAGGTTCCCACGCCGCGTTTCGACGCTGT
CGCTGATCGGTTCCGAAGCCGCCGCGGGCGGATGATGCGCGGTGGGGACA
GAAGGGCTGGTGAGGAGGAGGGAGACAGCGAGGTGTCGTTCGGAGGGGGT
TCCATGTCATCCTTTGGCGCGGCCGGGAGCGAAGGGTGGAGCGAAGGCGG
CAACGGGCAGATGCGGGAAGGTGTTGGGGTTGGCGGGTCGCGGAAGGGGG
GCGCGGGGGCACTACTGCAGGACCTCGAGGAAGCGGCCGTGGTCGACGGA
GAAGTCACCAGAGGCGGCGGCGGCAGCGGCGGCGGCGGCGGTGGCGGCGG
GAGGAAGGGGTGGGGGAGAGGTACGGCCTTTGCCGGTCACGTCGCCCCCG
CTGGGAAGGAGGGGGTCTCGGGTGTCGCCGGACCGCTTGGAGATGACGTC
GCGGAAGAGCACGGGTTGTTGAGCAGGCTCAGGTCTGTCGCGCAGGAGGC
CCGCCTGGAAGTCATGGACAGCCGTCTGCAGGACTTGCACGTGAGTGAGG
GATCATGAAGTCGAGTTTCAAGCTGCAGTGGGGGCGGGGGTGGGCGAGGC
AGGGGCCGCGCTCGAGGAGGTTCCCACGCCGCGTTTCGACGCTGTCGCTG
ATCGGTTCCGAAGCCGCCGCGGGCGGATGATGCGCGGTGGGGACAGAAGG
GCTGGTGAGGAGGAGGGAGACAGCGAGGTGTCGTTCGGAGGGGGTTCCAT
GTCATCCTTTGGCGCGGCCGGGAGCGAAGGGTGGAGCGAAGGCGGCAACG
GGCAGATGCGGGAAGGTGTTGGGGTTGGCGGGTCGCGGAAGGGGGGCGCG
GGGGCACTACTGCAGGACCTCGAGGAAGCGGCCGTGGTCGACGGAGAAGT
CACCAGAGGCGGCGGCGGCAGCGGCGGCGGCGGCGGTGGCGGCGGGAGGA
AGGGGTGGGGGAGAGGTACGGCCTTTGCCGGTCACGTCGCCCCCGCTGGG
AAGGAGGGGGTCTCGGGTGTCGCCGGACCGCTTGGAGATGACGTCGCGGA
AGAGCACGGGTTGTTGAGCAGGCTCAGGTCTGTCGCGCAGGAGGCCCGCC
TGGAAGTCATGGACAGCCGTCTGCAGGACTTGCACGTGAGTGAG
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