mRNA_M-pyrifera_M_contig11129.2355.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11129.2355.1
Unique NamemRNA_M-pyrifera_M_contig11129.2355.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Match: A0A6H5KGN2_9PHAE (P4Hc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN2_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.920e-55
Identity = 98/149 (65.77%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    4 GRRKAAACNANIRVYRYAAGQRFGKHVDESVEDEHGNLSQWTVLIYLNGGAA----------------GLSGGDRGSGGSGAEAEVGEETLRGGETVFYKGNYGGKVAASFSPVQGACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMY 402
            G R+  ACN+NIR+YRYA GQRFGKH+DESV+DE+G  SQWTVLIYLNG                   G S       G+G E       LRGGETVFYKGNYG KVAASFSP QGACLVHGHG+QCLLHEGAAVTSGVKYLLRTDVMY
Sbjct:   87 GGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXXXXKKKGRSDXXXAFAGAGEEGAP----LRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMY 231          
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Match: A0A836CHZ3_9STRA (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ3_9STRA)

HSP 1 Score: 161 bits (407), Expect = 9.380e-48
Identity = 82/132 (62.12%), Postives = 97/132 (73.48%), Query Frame = 1
Query:   10 RKAAACNANIRVYRYAAGQRFGKHVDESVEDEH-GNLSQWTVLIYLNGGAAGLSGGDRGSGGSGAEAEVGEETLRGGETVFYKGNYGGKVAASFSPVQGACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMY 402
            RKAA CNANIR+YRY  GQRFGKH+DESV D   G  S++T+L+YLNG              +G+     E  L GGET+FYKG+YGGK+AAS +P+ G+CLVHGHG +CLLHEGA VTSGVKYLLRTDVMY
Sbjct:   76 RKAAGCNANIRLYRYCVGQRFGKHIDESVLDPTTGATSEYTLLLYLNG--------------AGSPVRGEEGPLAGGETLFYKGSYGGKLAASVTPIAGSCLVHGHGARCLLHEGALVTSGVKYLLRTDVMY 193          
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Match: A0A7S2UX31_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX31_9STRA)

HSP 1 Score: 147 bits (370), Expect = 7.800e-41
Identity = 75/144 (52.08%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    4 GRRKAAACNANIRVYRYAAGQRFGKHVDESVEDEHGNLSQWTVLIYLNGGAAGLSGGDRGSGGSGAEAEVG-----------EETLRGGETVFYKGNYGGKVAASFSPVQGACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMY 402
            G ++A+ C+ NIR+Y+Y  GQRFGKH+D S  D+HG  S +TVL+YL+GG       D+G      E   G           +E L+GG TVFY+G+YG KVAAS +P+QG+CL+HGHG +CL+HEGA V  GVKY+LRTDVMY
Sbjct:  167 GGKEASGCSNNIRLYKYVPGQRFGKHIDGSNVDQHGRQSYYTVLVYLSGGE------DQGRPSPAEEEAKGGAPLDGLEESLQEPLQGGHTVFYRGSYGDKVAASVAPLQGSCLLHGHGDRCLVHEGAEVKRGVKYVLRTDVMY 304          
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Match: D7FQ80_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ80_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.910e-40
Identity = 98/227 (43.17%), Postives = 106/227 (46.70%), Query Frame = 1
Query:    4 GRRKAAACNANIRVYRYAAGQRFGKHVDESVEDEHGNLSQWTVLIYLNGGAA-----------------GLSGGDRGSGGSGAEAEVGEETLRGGETVFYK-----------------------------------------------------------------------------GNYGGKVAASFSPVQGACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMY 402
            G R+  ACN+NIR+YRYA GQRFGKH+DESV+DE+G  SQWTVLIYLNG                    G S       G+G E       LRGGETVFYK                                                                             GNYG KVAASFSP QGACLVHGHG+QCLLHEGAAVTSGVKYLLRTDVMY
Sbjct:  123 GGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXXXXSKKKGRSDXXXTFAGAGEEGAP----LRGGETVFYKAAADALCCVPLFPIGTRGFKQILEESVSVHSPTLPLTQVPCSLFPTCVLLPLNPSPLSAVLRALTFGSLSSCLLPFKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMY 345          
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Match: A0A7S2Z9G1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2Z9G1_9RHOD)

HSP 1 Score: 138 bits (347), Expect = 4.640e-39
Identity = 69/128 (53.91%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   19 AACNANIRVYRYAAGQRFGKHVDESVEDEHGNLSQWTVLIYLNGGAAGLSGGDRGSGGSGAEAEVGEETLRGGETVFYKGNYGGKVAASFSPVQGACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMY 402
            A C++NIR+YRY  GQRFGKHVDES + E+G  S +T+LIYLN                        E LRGGETVFYKGNYG K+A S++P  G+ L+HGHG +C++HEG AV  G KY+LRTDVMY
Sbjct:   54 AGCSSNIRLYRYIEGQRFGKHVDESHDGENGERSVFTLLIYLN-----------------------HEGLRGGETVFYKGNYGDKLALSYAPRAGSLLLHGHGSRCMVHEGKAVIEGQKYVLRTDVMY 158          
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Match: A0A7S2ZAS2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAS2_9RHOD)

HSP 1 Score: 138 bits (347), Expect = 6.660e-38
Identity = 69/128 (53.91%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   19 AACNANIRVYRYAAGQRFGKHVDESVEDEHGNLSQWTVLIYLNGGAAGLSGGDRGSGGSGAEAEVGEETLRGGETVFYKGNYGGKVAASFSPVQGACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMY 402
            A C++NIR+YRY  GQRFGKHVDES + E+G  S +T+LIYLN                        E LRGGETVFYKGNYG K+A S++P  G+ L+HGHG +C++HEG AV  G KY+LRTDVMY
Sbjct:  150 AGCSSNIRLYRYIEGQRFGKHVDESHDGENGERSVFTLLIYLN-----------------------HEGLRGGETVFYKGNYGDKLALSYAPRAGSLLLHGHGSRCMVHEGKAVIEGQKYVLRTDVMY 254          
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Match: A0A0L0G5Z2_9EUKA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G5Z2_9EUKA)

HSP 1 Score: 136 bits (342), Expect = 3.390e-37
Identity = 71/135 (52.59%), Postives = 91/135 (67.41%), Query Frame = 1
Query:    1 HGRRKAAACNANIRVYRYAAGQRFGKHVDESVEDEHGNLSQWTVLIYLNGGAAGLSGGDRGSGGSGAEAEVGEETLRGGETVFYKGNYGGKVAASFSPVQGACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMYS 405
            +G R+  +CN NIR+Y+Y  GQRFG+HVDESV D +G  S +TVL+YLNG     +  +    G GA+ E    TL GGET FY+ ++G  +A +  P +G  L+HGHG QCL HEGA V  GVKYLLRTDVMY+
Sbjct:  123 YGTRQLNSCNTNIRLYKYGPGQRFGRHVDESVVDSNGRKSVYTVLVYLNGHNEDNTS-ETPRSGDGADLEA-INTLVGGETKFYRRHHGSAIACAVRPKKGQALLHGHGAQCLTHEGAEVKEGVKYLLRTDVMYA 255          
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Match: A0A6T9P3C4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9P3C4_9EUKA)

HSP 1 Score: 124 bits (312), Expect = 3.690e-33
Identity = 64/134 (47.76%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    4 GRRKAAACNANIRVYRYAAGQRFGKHVDESVEDEHGNLSQWTVLIYLNGGAAGLSGGDRGSGGSGAEAEVGEETLRGGETVFYKGNYGGKVAASFSPVQGACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMYS 405
            GR + + CNANIR+Y+Y  GQRFG+HVD+S     G+ +++TVL+YLN                        E  RGGETVFY  ++    A  FSP  GA LVH HG +CL HEG+ VT GVKYLLRTD+ YS
Sbjct:  103 GRLRPSGCNANIRLYKYGQGQRFGRHVDQSNRLSDGSSTEFTVLLYLN------------------------EGFRGGETVFYTSHFAATEAYRFSPSAGAVLVHAHGERCLTHEGSEVTQGVKYLLRTDLAYS 212          
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Match: A0A812Q5H6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q5H6_9DINO)

HSP 1 Score: 123 bits (308), Expect = 5.860e-32
Identity = 64/132 (48.48%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   10 RKAAACNANIRVYRYAAGQRFGKHVDESVED-EHGNLSQWTVLIYLNGGAAGLSGGDRGSGGSGAEAEVGEETLRGGETVFYKGNYGGKVAASFSPVQGACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMY 402
            R A  C+  IRVYRY  GQRFG+HVD S ++ E G  + +TVL+YLNGG                E +  +  +RGGETVF+K + G + A +F P +G CL HGHG +C+ HEGA V  GVKY+LRTDV+Y
Sbjct:  150 RAALGCSPRIRVYRYVKGQRFGQHVDGSRDEPEMGGRTHFTVLVYLNGG----------------ERDPKDLQVRGGETVFWKDHDGKRPALAFPPTRGVCLFHGHGDECMTHEGAGVEEGVKYVLRTDVVY 265          
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Match: A0A813GA74_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GA74_POLGL)

HSP 1 Score: 123 bits (308), Expect = 6.130e-32
Identity = 66/132 (50.00%), Postives = 81/132 (61.36%), Query Frame = 1
Query:   10 RKAAACNANIRVYRYAAGQRFGKHVDESVEDEH-GNLSQWTVLIYLNGGAAGLSGGDRGSGGSGAEAEVGEETLRGGETVFYKGNYGGKVAASFSPVQGACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMY 402
            RKA  C+  IRVYRY  GQRFG+HVD S E+   G  + +TVLIYLNGG                + E  +  ++GGETVF+K + G K A  F P +G CL HGHG  C+ HEGA V  GVKY+LRTDV+Y
Sbjct:  152 RKALGCSPRIRVYRYTRGQRFGQHVDGSREEPSMGGSTHFTVLIYLNGG----------------DREEKDLQVKGGETVFWKDHDGKKPALVFPPTRGVCLFHGHGDDCMTHEGAGVEDGVKYVLRTDVVY 267          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11129.2355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGN2_9PHAE1.920e-5565.77P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CHZ3_9STRA9.380e-4862.12Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A7S2UX31_9STRA7.800e-4152.08Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FQ80_ECTSI1.910e-4043.17P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2Z9G1_9RHOD4.640e-3953.91Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZAS2_9RHOD6.660e-3853.91Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A0L0G5Z2_9EUKA3.390e-3752.59Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6T9P3C4_9EUKA3.690e-3347.76Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A812Q5H6_9DINO5.860e-3248.48Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A813GA74_POLGL6.130e-3250.00Hypothetical protein n=3 Tax=Polarella glacialis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11129contigM-pyrifera_M_contig11129:2337..3446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue7.6e-33
Seed eggNOG ortholog2880.D7FQ80
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Prolyl 4-hydroxylase alpha subunit homologues.
EggNOG OGs28IQ0@1,2QR14@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.861339-CDS-M-pyrifera_M_contig11129:2336..25911622815624.861339-CDS-M-pyrifera_M_contig11129:2336..2591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11129 2337..2591 +
1692277493.2459056-CDS-M-pyrifera_M_contig11129:2336..25911692277493.2459056-CDS-M-pyrifera_M_contig11129:2336..2591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11129 2337..2591 +
1622815624.8720746-CDS-M-pyrifera_M_contig11129:3293..34461622815624.8720746-CDS-M-pyrifera_M_contig11129:3293..3446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11129 3294..3446 +
1692277493.2627852-CDS-M-pyrifera_M_contig11129:3293..34461692277493.2627852-CDS-M-pyrifera_M_contig11129:3293..3446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11129 3294..3446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11129.2355.1prot_M-pyrifera_M_contig11129.2355.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11129 2337..3446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11129.2355.1

>prot_M-pyrifera_M_contig11129.2355.1 ID=prot_M-pyrifera_M_contig11129.2355.1|Name=mRNA_M-pyrifera_M_contig11129.2355.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
HGRRKAAACNANIRVYRYAAGQRFGKHVDESVEDEHGNLSQWTVLIYLNG
GAAGLSGGDRGSGGSGAEAEVGEETLRGGETVFYKGNYGGKVAASFSPVQ
GACLVHGHGRQCLLHEGAAVTSGVKYLLRTDVMYS*
back to top

mRNA from alignment at M-pyrifera_M_contig11129:2337..3446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11129.2355.1 ID=mRNA_M-pyrifera_M_contig11129.2355.1|Name=mRNA_M-pyrifera_M_contig11129.2355.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig11129:2337..3446+ (Macrocystis pyrifera P11B4 male)
CATGGTCGCAGAAAAGCGGCTGCGTGCAACGCAAACATTCGTGTCTATCG ATACGCCGCCGGGCAGCGCTTCGGGAAGCATGTGGACGAGAGCGTGGAGG ACGAGCATGGCAACCTCAGCCAGTGGACGGTCCTGATTTACTTGAACGGC GGGGCAGCAGGATTGTCGGGAGGAGACCGAGGTTCTGGAGGATCAGGAGC GGAGGCGGAGGTGGGGGAGGAAACGCTTCGAGGAGGGGAAACTGTGTTCT ACAAGGTGAGAAGGCATTTCACATGGATCAGCGACAACTTGTGCTGATAG TATGACAATAACACCAGTGAGATTTCGACCTAGAATCCCATTTCCAAGCT CGACAAGTTGGGTCACTTGCACGAAGCGTAACGTTGTGGTTGCGGTCGTG GTTGTCGAAGCGCGAGCTAGCTCCCTAAAGTACAGCGGTGCGTGTACGTC GCGTGAACCTTCAACGTTGGAAAGCAGGTGGCCCGGAAAAAGACCTCCGG TAGGAAAAATTACCAGCTCTAACATGCCAGGTATAGGCCGGGTGCCGCAC CTGTACGAGATGGCTCAGCTTCGGGATCCGTTATTTGGAAAAAGCTGTAC CTGCTGACACGCAGCTAAGATACTGGTATATATTGGCATCGTACCGGCAA CCGCACAGCATCCGACCCCCCCCCCCTGTGTCCCTGGATAGCGCCCTTGG AAGTGTGCGTAGTCGAGGTGATGGCGGCTCCTCGTCGTATCATGTTACAT GATATGCCCGGTACTGCACTTCATCAGGGCATCTTTAGGTAGATCGGTCG GAATGGGCTGTGAGTGCGGTAGGCGAATGTACCCGCCTTTTGCGTTCAAT CGTTCCCCGGCCCATCTGGGAAGGCGTGCGTGCTCTCGGCCTAGTGTATG TTCGGCTTTGTATGCTCCGGCGCCCCACACCTACGCGTTTATCTCGTTGT ATGGCAGGGCAACTACGGGGGGAAAGTCGCGGCATCGTTTTCGCCGGTGC AGGGAGCATGCCTAGTTCACGGACACGGACGCCAATGTCTTCTGCACGAG GGGGCTGCTGTGACCTCCGGCGTTAAGTACCTCCTCCGAACGGACGTAAT GTATTCGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11129:2337..3446+

>mRNA_M-pyrifera_M_contig11129.2355.1 ID=mRNA_M-pyrifera_M_contig11129.2355.1|Name=mRNA_M-pyrifera_M_contig11129.2355.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig11129:2337..3446+ (Macrocystis pyrifera P11B4 male)
CATGGTCGCAGAAAAGCGGCTGCGTGCAACGCAAACATTCGTGTCTATCG
ATACGCCGCCGGGCAGCGCTTCGGGAAGCATGTGGACGAGAGCGTGGAGG
ACGAGCATGGCAACCTCAGCCAGTGGACGGTCCTGATTTACTTGAACGGC
GGGGCAGCAGGATTGTCGGGAGGAGACCGAGGTTCTGGAGGATCAGGAGC
GGAGGCGGAGGTGGGGGAGGAAACGCTTCGAGGAGGGGAAACTGTGTTCT
ACAAGCATGGTCGCAGAAAAGCGGCTGCGTGCAACGCAAACATTCGTGTC
TATCGATACGCCGCCGGGCAGCGCTTCGGGAAGCATGTGGACGAGAGCGT
GGAGGACGAGCATGGCAACCTCAGCCAGTGGACGGTCCTGATTTACTTGA
ACGGCGGGGCAGCAGGATTGTCGGGAGGAGACCGAGGTTCTGGAGGATCA
GGAGCGGAGGCGGAGGTGGGGGAGGAAACGCTTCGAGGAGGGGAAACTGT
GTTCTACAAGGGCAACTACGGGGGGAAAGTCGCGGCATCGTTTTCGCCGG
TGCAGGGAGCATGCCTAGTTCACGGACACGGACGCCAATGTCTTCTGCAC
GAGGGGGCTGCTGTGACCTCCGGCGTTAAGTACCTCCTCCGAACGGACGT
AATGTATTCGTAGGGCAACTACGGGGGGAAAGTCGCGGCATCGTTTTCGC
CGGTGCAGGGAGCATGCCTAGTTCACGGACACGGACGCCAATGTCTTCTG
CACGAGGGGGCTGCTGTGACCTCCGGCGTTAAGTACCTCCTCCGAACGGA
CGTAATGTATTCGTAG
back to top