mRNA_M-pyrifera_M_contig111223.2346.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111223.2346.1
Unique NamemRNA_M-pyrifera_M_contig111223.2346.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A5A8CXW1_CAFRO (AP complex subunit sigma n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CXW1_CAFRO)

HSP 1 Score: 77.8 bits (190), Expect = 7.000e-17
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 159
            IRFFLLQNR GKTRLSKWYV  EE EKRK+E E FKL++ RD KFTNFVE +
Sbjct:    2 IRFFLLQNRAGKTRLSKWYVTVEEPEKRKIETEVFKLISARDGKFTNFVEFK 53
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BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A813AR36_9DINO (AP complex subunit sigma (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AR36_9DINO)

HSP 1 Score: 76.6 bits (187), Expect = 1.810e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVRN 162
            IRFFLLQNRQGKTRLSKWYV  EE EKRK+E E  +++T RD K+TNFVE +N
Sbjct:    1 IRFFLLQNRQGKTRLSKWYVDVEEAEKRKIEGEVHRMITMRDGKYTNFVEFQN 53
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BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A7S0TMX3_HEMAN (AP complex subunit sigma n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0TMX3_HEMAN)

HSP 1 Score: 76.3 bits (186), Expect = 3.860e-16
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    4 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVRN 162
            IRF LLQNRQGKTRLSKWYVP E+ EK+ +++E  K+VT+R++KFTNFVE RN
Sbjct:   19 IRFLLLQNRQGKTRLSKWYVPYEDSEKQSIQVECHKIVTQREAKFTNFVEWRN 71
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BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: L1JN93_GUITC (AP complex subunit sigma n=3 Tax=Geminigeraceae TaxID=589343 RepID=L1JN93_GUITC)

HSP 1 Score: 74.3 bits (181), Expect = 1.480e-15
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    4 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 159
            IRF LLQNRQGKTRLSKWYVP ++ EK+ ++LE  K+VT+R+SKFTNFVE R
Sbjct:    2 IRFLLLQNRQGKTRLSKWYVPYDDTEKQSIQLECHKVVTQRESKFTNFVEWR 53
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BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A817BF67_BRANA (AP complex subunit sigma n=2 Tax=Brassica TaxID=3705 RepID=A0A817BF67_BRANA)

HSP 1 Score: 74.7 bits (182), Expect = 1.640e-15
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 QIRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 159
            QIRF LLQNRQGKTRL+K+YVP EE EK KVE E  +LV  RD+KFTNFVE R
Sbjct:   24 QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFR 76
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BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A0D3CNZ5_BRAOL (AP complex subunit sigma n=3 Tax=Brassica TaxID=3705 RepID=A0A0D3CNZ5_BRAOL)

HSP 1 Score: 74.7 bits (182), Expect = 1.680e-15
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 QIRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 159
            QIRF LLQNRQGKTRL+K+YVP EE EK KVE E  +LV  RD+KFTNFVE R
Sbjct:   25 QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFR 77
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BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A2G9HCV7_9LAMI (Clat_adaptor_s domain-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HCV7_9LAMI)

HSP 1 Score: 71.6 bits (174), Expect = 2.480e-15
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEV 156
            IRF LLQNRQGKTRL+K+Y+P EE EK KVE E  +LV  RD KFTNFVEV
Sbjct:    2 IRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEV 52
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BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A5A7V4V8_CUCME (AP-2 complex subunit sigma n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7V4V8_CUCME)

HSP 1 Score: 72.8 bits (177), Expect = 3.450e-15
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    4 IRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 159
            IRF LLQNRQGKTRL+K+YVP EE EK KVE E  +LV  RD KFTNFVE+R
Sbjct:   53 IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVELR 104
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BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A835F7V8_9POAL (AP complex subunit sigma n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835F7V8_9POAL)

HSP 1 Score: 73.2 bits (178), Expect = 3.660e-15
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 QIRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 159
            QIRF LLQNRQGKTRL+K+YVP E+ EK KVE E  +LV  RD KFTNFVE R
Sbjct:    2 QIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEFEVHRLVVNRDPKFTNFVEFR 54
[Close]
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Match: A0A2I0AFK9_9ASPA (AP complex subunit sigma n=2 Tax=Orchidaceae TaxID=4747 RepID=A0A2I0AFK9_9ASPA)

HSP 1 Score: 73.9 bits (180), Expect = 3.790e-15
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 QIRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFVEVR 159
            QIRF LLQNRQGKTRL+K+YVP EE EK KVE E  +LV  RD KFTNFVE R
Sbjct:   31 QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFR 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111223.2346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CXW1_CAFRO7.000e-1775.00AP complex subunit sigma n=1 Tax=Cafeteria roenber... [more]
A0A813AR36_9DINO1.810e-1671.70AP complex subunit sigma (Fragment) n=1 Tax=Symbio... [more]
A0A7S0TMX3_HEMAN3.860e-1669.81AP complex subunit sigma n=3 Tax=Hemiselmis TaxID=... [more]
L1JN93_GUITC1.480e-1571.15AP complex subunit sigma n=3 Tax=Geminigeraceae Ta... [more]
A0A817BF67_BRANA1.640e-1573.58AP complex subunit sigma n=2 Tax=Brassica TaxID=37... [more]
A0A0D3CNZ5_BRAOL1.680e-1573.58AP complex subunit sigma n=3 Tax=Brassica TaxID=37... [more]
A0A2G9HCV7_9LAMI2.480e-1572.55Clat_adaptor_s domain-containing protein n=1 Tax=H... [more]
A0A5A7V4V8_CUCME3.450e-1573.08AP-2 complex subunit sigma n=1 Tax=Cucumis melo va... [more]
A0A835F7V8_9POAL3.660e-1571.70AP complex subunit sigma n=1 Tax=Digitaria exilis ... [more]
A0A2I0AFK9_9ASPA3.790e-1573.58AP complex subunit sigma n=2 Tax=Orchidaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111223contigM-pyrifera_M_contig111223:167..328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.5
Seed ortholog evalue8.6e-12
Seed eggNOG ortholog3711.Bra027439.1-P
KEGG koko:K11827
KEGG Pathwayko04144,ko04721,ko04961,ko05016,map04144,map04721,map04961,map05016
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Belongs to the adaptor complexes small subunit family
EggNOG OGs37I8A@33090,3GDVG@35493,3HTT8@3699,COG5030@1,KOG0935@2759
COG Functional cat.U
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.3198466-CDS-M-pyrifera_M_contig111223:166..3281622815624.3198466-CDS-M-pyrifera_M_contig111223:166..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111223 167..328 -
1692277493.0192614-CDS-M-pyrifera_M_contig111223:166..3281692277493.0192614-CDS-M-pyrifera_M_contig111223:166..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111223 167..328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111223.2346.1prot_M-pyrifera_M_contig111223.2346.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111223 167..328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111223.2346.1

>prot_M-pyrifera_M_contig111223.2346.1 ID=prot_M-pyrifera_M_contig111223.2346.1|Name=mRNA_M-pyrifera_M_contig111223.2346.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
QIRFFLLQNRQGKTRLSKWYVPAEEEEKRKVELEAFKLVTKRDSKFTNFV
EVRN
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mRNA from alignment at M-pyrifera_M_contig111223:167..328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111223.2346.1 ID=mRNA_M-pyrifera_M_contig111223.2346.1|Name=mRNA_M-pyrifera_M_contig111223.2346.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig111223:167..328- (Macrocystis pyrifera P11B4 male)
CAGATCCGCTTCTTCTTGCTCCAAAATAGACAAGGAAAGACGAGGCTCTC
GAAGTGGTATGTCCCTGCAGAAGAAGAAGAGAAGCGAAAGGTCGAGCTCG
AAGCCTTCAAACTCGTCACAAAGAGAGACTCAAAGTTCACAAACTTTGTT
GAGGTAAGGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111223:167..328-

>mRNA_M-pyrifera_M_contig111223.2346.1 ID=mRNA_M-pyrifera_M_contig111223.2346.1|Name=mRNA_M-pyrifera_M_contig111223.2346.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig111223:167..328- (Macrocystis pyrifera P11B4 male)
CAGATCCGCTTCTTCTTGCTCCAAAATAGACAAGGAAAGACGAGGCTCTC
GAAGTGGTATGTCCCTGCAGAAGAAGAAGAGAAGCGAAAGGTCGAGCTCG
AAGCCTTCAAACTCGTCACAAAGAGAGACTCAAAGTTCACAAACTTTGTT
GAGGTAAGGAATCAGATCCGCTTCTTCTTGCTCCAAAATAGACAAGGAAA
GACGAGGCTCTCGAAGTGGTATGTCCCTGCAGAAGAAGAAGAGAAGCGAA
AGGTCGAGCTCGAAGCCTTCAAACTCGTCACAAAGAGAGACTCAAAGTTC
ACAAACTTTGTTGAGGTAAGGAAT
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