mRNA_M-pyrifera_M_contig11122.2344.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Match: D8LTR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR3_ECTSI) HSP 1 Score: 160 bits (405), Expect = 9.330e-49 Identity = 79/97 (81.44%), Postives = 90/97 (92.78%), Query Frame = 1
Query: 1 MPLLDNIVTGGVRMSKYISKSARKRIPMTSKMGNKNYYKGKGATKEGTLNSKGRFITDPARRLEIVAPNLDGFKLKPYVSKAVWKPKKG-EIKLDLA 288
MPL+ NIVTGG+RMSKYISKSARKRIPMTSKMGNKN+YKGKGATKEGT+NS+GRFI DP +RLEI+AP+LDGFKLKPYVSKAVWKP++G + LD A
Sbjct: 1 MPLIGNIVTGGLRMSKYISKSARKRIPMTSKMGNKNFYKGKGATKEGTINSRGRFIVDPEKRLEIIAPDLDGFKLKPYVSKAVWKPRRGGQALLDSA 97
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Match: A0A835ZJH5_9STRA (Mitochondrial ribosomal protein L27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJH5_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.490e-24 Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1
Query: 1 MPLLDNIVTGGVRMSKYISKSARKRIPMTSKMGNKNYYKGKGATKEGTLNSKGRFITDPARRLEIVAPNLDGFKLKPYVSKAVW 252
MP+L +I G +RMSKY+SK+A KR P+ K GNKN+YKG GA EG LNSK +FI D + LE+VAP+L F+LKPYV+K+++
Sbjct: 1 MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIY 84
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Match: A0A448ZFN2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFN2_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 4.280e-24 Identity = 45/72 (62.50%), Postives = 59/72 (81.94%), Query Frame = 1
Query: 40 MSKYISKSARKRIPMTSKMGNKNYYKGKGATKEGTLNSKGRFITDPARRLEIVAPNLDGFKLKPYVSKAVWK 255
+SKYISKSARKR+P+T+K K YYKGKGATKEG L SKG+FI DP ++LE++ P+L+GF LKPY+++ K
Sbjct: 17 ISKYISKSARKRMPLTTKRAGKGYYKGKGATKEGRLTSKGKFIPDPKKKLELIVPDLEGFNLKPYIARTASK 88
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Match: A0A7S4A9E0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9E0_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 3.230e-23 Identity = 43/72 (59.72%), Postives = 60/72 (83.33%), Query Frame = 1
Query: 40 MSKYISKSARKRIPMTSKMGNKNYYKGKGATKEGTLNSKGRFITDPARRLEIVAPNLDGFKLKPYVSKAVWK 255
+SKYISKSARKR+P+T+K K YYKG G+TKEG L SKG+F++DP ++LE++AP+L+GF LKPY+++ K
Sbjct: 52 ISKYISKSARKRLPLTTKRAGKGYYKGNGSTKEGRLTSKGKFVSDPKKKLELMAPDLEGFNLKPYIARTATK 123
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Match: A0A1Z5J9Q3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9Q3_FISSO) HSP 1 Score: 95.5 bits (236), Expect = 6.880e-23 Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 40 MSKYISKSARKRIPMTSKMGNKNYYKGKGATKEGTLNSKGRFITDPARRLEIVAPNLDGFKLKPYVSKAV 249
MSKY+SK+A+KR+ +T+K +K +YKG GATKEG L SKG+FI DP RRLE+V P+L GFKLKPY++++V
Sbjct: 29 MSKYLSKAAKKRLVLTTKRAHKGFYKGNGATKEGRLTSKGKFIVDPLRRLELVVPDLTGFKLKPYIARSV 98
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Match: A0A7S1D0Q8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0Q8_CYCTE) HSP 1 Score: 94.7 bits (234), Expect = 1.100e-22 Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 1
Query: 22 VTGGVR-MSKYISKSARKRIPMTSKMGNKNYYKGKGATKEGTLNSKGRFITDPARRLEIVAPNLDGFKLKPYVSKAVWK 255
V+ VR MSK++SKSA KR+P+ +K K +YKGKG TK+G L SKG+FI DPA+RLE+V P+L GFKLKPY++ V K
Sbjct: 14 VSSSVRHMSKFLSKSATKRLPLGTKRARKGFYKGKGGTKDGRLTSKGKFIVDPAKRLELVVPDLQGFKLKPYIASTVPK 92
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Match: A0A7S2XKT9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKT9_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.180e-21 Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1
Query: 13 DNIVTGGVR-MSKYISKSARKRIPMTSKMGNKNYYKGKGATKEGTLNSKGRFITDPARRLEIVAPN-LDGFKLKPYVS 240
+ I GGVR MSKY+SKSA KR+P++SK K YYKG G TKEG + SKGRF+ D ++RLEIV P L+GF+LKPYVS
Sbjct: 22 NGICYGGVRFMSKYLSKSATKRVPLSSKRARKGYYKGNGGTKEGHITSKGRFVVDFSKRLEIVMPRTLEGFQLKPYVS 99
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Match: B5YMJ4_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMJ4_THAPS) HSP 1 Score: 93.2 bits (230), Expect = 2.100e-21 Identity = 41/72 (56.94%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 40 MSKYISKSARKRIPMTSKMGNKNYYKGKGATKEGTLNSKGRFITDPARRLEIVAPNLDGFKLKPYVSKAVWK 255
MSKY+SKSA KR+P+ +K K YYKGKG T EG L SKG+FI +P ++L+++ P+L+GFKLKPY++K++ K
Sbjct: 80 MSKYLSKSATKRLPLDTKRAKKGYYKGKGCTSEGRLTSKGKFIANPLKKLQLIVPDLEGFKLKPYIAKSISK 151
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Match: A0A7S3L6Q4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6Q4_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.170e-21 Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 1
Query: 28 GGVR-MSKYISKSARKRIPMTSKMGNKN-YYKGKGATKEGTLNSKGRFITDPARRLEIVAPNLDGFKLKPYVSKAVWK 255
G VR MSKY+SKSARKR P+T+K ++ +YKGKG TKEG L SKG+FI DP +RLE++ P+L GFKLKPY++ +V K
Sbjct: 22 GQVRFMSKYMSKSARKRQPLTTKRASRGGFYKGKGGTKEGRLTSKGKFIVDPLKRLELIVPDLTGFKLKPYIAASVPK 99
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Match: A0A7S2KAW4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KAW4_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 4.370e-21 Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 40 MSKYISKSARKRIPMTSKMGNKNYYKGKGATKEGTLNSKGRFITDPARRLEIVAPNLDGFKLKPYVSKAVWK 255
MSKY++K+A KR+P+T+K K YYKG GAT EG + SKG+FI DP ++L++V P+L+GFKLKPY++ AV K
Sbjct: 65 MSKYLTKAATKRLPLTNKKVKKGYYKGNGATVEGRITSKGKFIADPMKKLQLVVPDLEGFKLKPYIASAVSK 136 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11122.2344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11122.2344.1 >prot_M-pyrifera_M_contig11122.2344.1 ID=prot_M-pyrifera_M_contig11122.2344.1|Name=mRNA_M-pyrifera_M_contig11122.2344.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp MPLLDNIVTGGVRMSKYISKSARKRIPMTSKMGNKNYYKGKGATKEGTLNback to top mRNA from alignment at M-pyrifera_M_contig11122:553..5563+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11122.2344.1 ID=mRNA_M-pyrifera_M_contig11122.2344.1|Name=mRNA_M-pyrifera_M_contig11122.2344.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5011bp|location=Sequence derived from alignment at M-pyrifera_M_contig11122:553..5563+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11122:553..5563+ >mRNA_M-pyrifera_M_contig11122.2344.1 ID=mRNA_M-pyrifera_M_contig11122.2344.1|Name=mRNA_M-pyrifera_M_contig11122.2344.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig11122:553..5563+ (Macrocystis pyrifera P11B4 male)back to top |