mRNA_M-pyrifera_M_contig111200.2341.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111200.2341.1
Unique NamemRNA_M-pyrifera_M_contig111200.2341.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111200.2341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111200contigM-pyrifera_M_contig111200:62..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.109877-CDS-M-pyrifera_M_contig111200:61..5381622815624.109877-CDS-M-pyrifera_M_contig111200:61..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111200 62..538 +
1692277492.8933115-CDS-M-pyrifera_M_contig111200:61..5381692277492.8933115-CDS-M-pyrifera_M_contig111200:61..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111200 62..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111200.2341.1prot_M-pyrifera_M_contig111200.2341.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111200 62..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111200.2341.1

>prot_M-pyrifera_M_contig111200.2341.1 ID=prot_M-pyrifera_M_contig111200.2341.1|Name=mRNA_M-pyrifera_M_contig111200.2341.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
MRVAREVLNVAQVLVDVECDDTRLLTSVTTFVHTFVNYPLGNAISLLLRK
KGLASEANLTGDHVQGKSSEVRYMRLARASQFYKHRHIESSFRVELSPLH
FELIHLLLQLSVNAYSSVRYAAQEVLHVTFRYYFLPSRICGPLVIDYLGN
PGSPPEHIT
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mRNA from alignment at M-pyrifera_M_contig111200:62..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111200.2341.1 ID=mRNA_M-pyrifera_M_contig111200.2341.1|Name=mRNA_M-pyrifera_M_contig111200.2341.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig111200:62..538+ (Macrocystis pyrifera P11B4 male)
ATGAGGGTGGCTCGAGAAGTGCTCAACGTGGCTCAAGTGCTGGTAGACGT
GGAGTGTGACGACACACGCCTGCTGACCTCGGTGACAACGTTTGTGCACA
CCTTCGTGAACTACCCTCTTGGTAATGCCATCTCCCTCCTTTTGAGGAAG
AAGGGCCTTGCCAGTGAGGCGAACTTGACTGGCGACCATGTGCAGGGGAA
GAGCTCTGAGGTGCGCTACATGAGACTCGCCCGAGCGAGTCAATTTTACA
AGCACCGCCATATCGAGTCCTCCTTTCGTGTAGAGCTCTCGCCACTCCAC
TTTGAGCTCATCCATCTTCTTCTCCAGCTCTCGGTCAATGCCTATTCAAG
TGTGAGGTACGCAGCACAGGAGGTGTTGCACGTCACATTCCGCTACTACT
TTCTTCCTTCCCGCATCTGTGGACCCCTCGTGATTGACTACCTGGGTAAC
CCCGGCTCTCCTCCAGAGCACATCACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111200:62..538+

>mRNA_M-pyrifera_M_contig111200.2341.1 ID=mRNA_M-pyrifera_M_contig111200.2341.1|Name=mRNA_M-pyrifera_M_contig111200.2341.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig111200:62..538+ (Macrocystis pyrifera P11B4 male)
ATGAGGGTGGCTCGAGAAGTGCTCAACGTGGCTCAAGTGCTGGTAGACGT
GGAGTGTGACGACACACGCCTGCTGACCTCGGTGACAACGTTTGTGCACA
CCTTCGTGAACTACCCTCTTGGTAATGCCATCTCCCTCCTTTTGAGGAAG
AAGGGCCTTGCCAGTGAGGCGAACTTGACTGGCGACCATGTGCAGGGGAA
GAGCTCTGAGGTGCGCTACATGAGACTCGCCCGAGCGAGTCAATTTTACA
AGCACCGCCATATCGAGTCCTCCTTTCGTGTAGAGCTCTCGCCACTCCAC
TTTGAGCTCATCCATCTTCTTCTCCAGCTCTCGGTCAATGCCTATTCAAG
TGTGAGGTACGCAGCACAGGAGGTGTTGCACGTCACATTCCGCTACTACT
TTCTTCCTTCCCGCATCTGTGGACCCCTCGTGATTGACTACCTGGGTAAC
CCCGGCTCTCCTCCAGAGCACATCACTATGAGGGTGGCTCGAGAAGTGCT
CAACGTGGCTCAAGTGCTGGTAGACGTGGAGTGTGACGACACACGCCTGC
TGACCTCGGTGACAACGTTTGTGCACACCTTCGTGAACTACCCTCTTGGT
AATGCCATCTCCCTCCTTTTGAGGAAGAAGGGCCTTGCCAGTGAGGCGAA
CTTGACTGGCGACCATGTGCAGGGGAAGAGCTCTGAGGTGCGCTACATGA
GACTCGCCCGAGCGAGTCAATTTTACAAGCACCGCCATATCGAGTCCTCC
TTTCGTGTAGAGCTCTCGCCACTCCACTTTGAGCTCATCCATCTTCTTCT
CCAGCTCTCGGTCAATGCCTATTCAAGTGTGAGGTACGCAGCACAGGAGG
TGTTGCACGTCACATTCCGCTACTACTTTCTTCCTTCCCGCATCTGTGGA
CCCCTCGTGATTGACTACCTGGGTAACCCCGGCTCTCCTCCAGAGCACAT
CACT
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