mRNA_M-pyrifera_M_contig111192.2333.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111192.2333.1
Unique NamemRNA_M-pyrifera_M_contig111192.2333.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Match: A0A3D1G806_9BACT (DNA starvation/stationary phase protection protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G806_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 3.230e-18
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFLRDPEL 141
            LL+KQR +LNLSD+ DDEGTNA+MSDYI EQEKLVWMY++F++DPE+
Sbjct:  115 LLKKQRVLLNLSDMIDDEGTNAMMSDYIREQEKLVWMYSSFMKDPEI 161
[Close]
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Match: A0A8G1P6H7_9BACT (DNA starvation/stationary phase protection protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=A0A8G1P6H7_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 1.790e-13
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFL 126
            L++KQR +L+LSD   DEGTNALMSDYI EQEKLVWMYTAF+
Sbjct:  112 LIKKQRVLLDLSDRYGDEGTNALMSDYIREQEKLVWMYTAFM 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Match: A0A2E2J199_9FLAO (DNA starvation/stationary phase protection protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2E2J199_9FLAO)

HSP 1 Score: 68.9 bits (167), Expect = 1.940e-13
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFL 126
            LL KQR ILNLS   DDEGTN++MSDYI EQEKLVWMY+AFL
Sbjct:  115 LLTKQRVILNLSGEIDDEGTNSMMSDYIREQEKLVWMYSAFL 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Match: A0A7V1HWQ4_9BACT (DNA starvation/stationary phase protection protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V1HWQ4_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 3.800e-13
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFL 126
            LL KQR IL+LS   DDEGTNALMSDYI EQEKLVWMY+AFL
Sbjct:  114 LLIKQREILDLSGKIDDEGTNALMSDYIREQEKLVWMYSAFL 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Match: A0A327WW16_9BACT (Starvation-inducible DNA-binding protein n=1 Tax=Larkinella arboricola TaxID=643671 RepID=A0A327WW16_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 3.870e-13
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFL 126
            LLQK+R +L+LS   DDEGTNALMSDYI EQEKLVWMY+AFL
Sbjct:  115 LLQKERHLLSLSAEIDDEGTNALMSDYIREQEKLVWMYSAFL 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Match: A0A7L4UT55_9BACT (Starvation-inducible DNA-binding protein n=1 Tax=Balneicella halophila TaxID=1537566 RepID=A0A7L4UT55_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 5.140e-13
Identity = 30/42 (71.43%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFL 126
            +++KQR IL+L+D  +DEGTNALMSDYI+EQEKLVWMY++FL
Sbjct:  112 IIEKQREILDLTDELEDEGTNALMSDYISEQEKLVWMYSSFL 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Match: A0A1J0LIU9_9FLAO (DNA protection during starvation protein n=1 Tax=Flavobacteriaceae bacterium UJ101 TaxID=1150389 RepID=A0A1J0LIU9_9FLAO)

HSP 1 Score: 67.4 bits (163), Expect = 7.570e-13
Identity = 30/42 (71.43%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFL 126
            LL+K+R ILNLSD  DDEGTN++MSD+I+EQEKLVWM++A+L
Sbjct:  114 LLEKERLILNLSDEADDEGTNSMMSDFISEQEKLVWMFSAWL 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Match: A0A2D5PVY9_9FLAO (DNA starvation/stationary phase protection protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2D5PVY9_9FLAO)

HSP 1 Score: 67.0 bits (162), Expect = 1.090e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFLR 129
            LL KQR IL+LS   +DEGTNALMSDYI EQEKLVWMY+A+L+
Sbjct:  115 LLSKQRQILDLSGEIEDEGTNALMSDYIREQEKLVWMYSAYLK 157
[Close]
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Match: A0A6C1QJB9_9BACT (DNA starvation/stationary phase protection protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6C1QJB9_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 1.570e-12
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFLRD 132
            LL+KQR IL LSD  DDEGTNA+ SDYI EQEKLVWMY+++L +
Sbjct:  116 LLEKQRIILELSDKMDDEGTNAMASDYIREQEKLVWMYSSWLNN 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Match: A0A356H371_9BACT (DNA starvation/stationary phase protection protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A356H371_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 2.000e-12
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFL 126
            L++KQR IL L+   +DEGTNALMSDYI EQEKLVWMY+AFL
Sbjct:  112 LIRKQRVILTLASEANDEGTNALMSDYIREQEKLVWMYSAFL 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111192.2333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D1G806_9BACT3.230e-1874.47DNA starvation/stationary phase protection protein... [more]
A0A8G1P6H7_9BACT1.790e-1376.19DNA starvation/stationary phase protection protein... [more]
A0A2E2J199_9FLAO1.940e-1378.57DNA starvation/stationary phase protection protein... [more]
A0A7V1HWQ4_9BACT3.800e-1380.95DNA starvation/stationary phase protection protein... [more]
A0A327WW16_9BACT3.870e-1378.57Starvation-inducible DNA-binding protein n=1 Tax=L... [more]
A0A7L4UT55_9BACT5.140e-1371.43Starvation-inducible DNA-binding protein n=1 Tax=B... [more]
A0A1J0LIU9_9FLAO7.570e-1371.43DNA protection during starvation protein n=1 Tax=F... [more]
A0A2D5PVY9_9FLAO1.090e-1274.42DNA starvation/stationary phase protection protein... [more]
A0A6C1QJB9_9BACT1.570e-1270.45DNA starvation/stationary phase protection protein... [more]
A0A356H371_9BACT2.000e-1273.81DNA starvation/stationary phase protection protein... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111192contigM-pyrifera_M_contig111192:448..591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue4.6e-09
Seed eggNOG ortholog641524.ADICYQ_3983
Preferred namedps
KEGG koko:K04047
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0034641,GO:0042262,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.Belongs to the Dps family
EggNOG OGs47QGP@768503,4NQDD@976,COG0783@1,COG0783@2
COG Functional cat.P
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.5722587-CDS-M-pyrifera_M_contig111192:447..5911622815623.5722587-CDS-M-pyrifera_M_contig111192:447..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111192 448..591 -
1692277492.555591-CDS-M-pyrifera_M_contig111192:447..5911692277492.555591-CDS-M-pyrifera_M_contig111192:447..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111192 448..591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111192.2333.1prot_M-pyrifera_M_contig111192.2333.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111192 448..591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111192.2333.1

>prot_M-pyrifera_M_contig111192.2333.1 ID=prot_M-pyrifera_M_contig111192.2333.1|Name=mRNA_M-pyrifera_M_contig111192.2333.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
LLQKQRTILNLSDLTDDEGTNALMSDYITEQEKLVWMYTAFLRDPEL*
back to top

mRNA from alignment at M-pyrifera_M_contig111192:448..591-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111192.2333.1 ID=mRNA_M-pyrifera_M_contig111192.2333.1|Name=mRNA_M-pyrifera_M_contig111192.2333.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig111192:448..591- (Macrocystis pyrifera P11B4 male)
TTACTCCAAAAACAAAGAACCATATTAAATCTATCTGACCTTACAGACGA
TGAAGGTACAAATGCGTTAATGAGTGATTACATTACAGAACAAGAGAAAC
TTGTTTGGATGTACACTGCTTTTTTGAGAGATCCAGAGCTGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111192:448..591-

>mRNA_M-pyrifera_M_contig111192.2333.1 ID=mRNA_M-pyrifera_M_contig111192.2333.1|Name=mRNA_M-pyrifera_M_contig111192.2333.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig111192:448..591- (Macrocystis pyrifera P11B4 male)
TTACTCCAAAAACAAAGAACCATATTAAATCTATCTGACCTTACAGACGA
TGAAGGTACAAATGCGTTAATGAGTGATTACATTACAGAACAAGAGAAAC
TTGTTTGGATGTACACTGCTTTTTTGAGAGATCCAGAGCTGTAATTACTC
CAAAAACAAAGAACCATATTAAATCTATCTGACCTTACAGACGATGAAGG
TACAAATGCGTTAATGAGTGATTACATTACAGAACAAGAGAAACTTGTTT
GGATGTACACTGCTTTTTTGAGAGATCCAGAGCTGTAA
back to top