mRNA_M-pyrifera_M_contig111079.2319.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111079.2319.1
Unique NamemRNA_M-pyrifera_M_contig111079.2319.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Match: A0A517PGJ6_9PLAN (Sialidase n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517PGJ6_9PLAN)

HSP 1 Score: 300 bits (767), Expect = 1.580e-99
Identity = 143/147 (97.28%), Postives = 146/147 (99.32%), Query Frame = 1
Query:    1 QLKDGTVMGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIYGKD 441
            QLKDGTVMGFCRTNGGSQYVATSK+GGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNH+DI+P LRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIYGKD
Sbjct:  242 QLKDGTVMGFCRTNGGSQYVATSKDGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHKDIRPELRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIYGKD 388          
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Match: A0A517ZZS4_9PLAN (Sialidase n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZS4_9PLAN)

HSP 1 Score: 288 bits (736), Expect = 8.900e-95
Identity = 134/147 (91.16%), Postives = 141/147 (95.92%), Query Frame = 1
Query:    1 QLKDGTVMGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIYGKD 441
            +LKDGT+MGFCRTNGGSQYVA SK+GGKTFSTLKPS IISPVSPASIERIPSTGDLLLVWNNHQDI P LRGKRTPLT+AISKDEGQTW+ +QNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLS IYGK+
Sbjct:  242 ELKDGTIMGFCRTNGGSQYVAISKDGGKTFSTLKPSNIISPVSPASIERIPSTGDLLLVWNNHQDINPELRGKRTPLTVAISKDEGQTWQQIQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSVIYGKE 388          
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Match: A0A517V6J7_9PLAN (Sialidase n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V6J7_9PLAN)

HSP 1 Score: 271 bits (693), Expect = 2.780e-88
Identity = 126/146 (86.30%), Postives = 137/146 (93.84%), Query Frame = 1
Query:    1 QLKDGTVMGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIYGK 438
            +LKDGT+MGFCRTNGGSQYVA S++GG+TFS LKPSQIISPVSPASIERIPSTGDLLLVWNNHQ I   LRGKRTPLT+AISKDEG+TW+ +QN+E NPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITL+PLS IYGK
Sbjct:  246 ELKDGTLMGFCRTNGGSQYVAFSQDGGQTFSELKPSQIISPVSPASIERIPSTGDLLLVWNNHQGIDAKLRGKRTPLTLAISKDEGKTWQQIQNIETNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLVPLSVIYGK 391          
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Match: A0A2E2C265_9PLAN (Sialidase n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C265_9PLAN)

HSP 1 Score: 266 bits (680), Expect = 2.570e-86
Identity = 123/146 (84.25%), Postives = 135/146 (92.47%), Query Frame = 1
Query:    1 QLKDGTVMGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIYGK 438
            +LKDGT+MGFCRTNGGSQYVA SK+GG+TFS LKPS IISPVSPASIERIPSTGDLLLVWNNH+ I   LRGKRTPL++AIS+DEG+TW+  QN+E NPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQIT +PLSAIYGK
Sbjct:  246 ELKDGTLMGFCRTNGGSQYVAFSKDGGQTFSELKPSNIISPVSPASIERIPSTGDLLLVWNNHEGIDATLRGKRTPLSLAISRDEGKTWQQAQNIETNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITFVPLSAIYGK 391          
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Match: A0A517W4E5_9PLAN (Sialidase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W4E5_9PLAN)

HSP 1 Score: 259 bits (663), Expect = 9.550e-84
Identity = 119/146 (81.51%), Postives = 132/146 (90.41%), Query Frame = 1
Query:    1 QLKDGTVMGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIYGK 438
            +LKDG +MGFCRTNGGSQYVA S NGGK+FS LKPS +I+PVSPASIERIP+TGDLLLVWNNH+ I P LRGKRTPLTIA+SKDEG+TW+  QNVE NPNGWYCYTAIEFTKDGVLLGHCAGDRT+NNGLAESQIT +PLS +Y K
Sbjct:  246 ELKDGRLMGFCRTNGGSQYVAYSNNGGKSFSELKPSNMIAPVSPASIERIPATGDLLLVWNNHEGISPQLRGKRTPLTIAVSKDEGKTWQHTQNVETNPNGWYCYTAIEFTKDGVLLGHCAGDRTRNNGLAESQITFVPLSVLYEK 391          
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Match: A0A517R8J4_9PLAN (Sialidase A n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R8J4_9PLAN)

HSP 1 Score: 258 bits (660), Expect = 2.710e-83
Identity = 120/146 (82.19%), Postives = 134/146 (91.78%), Query Frame = 1
Query:    1 QLKDGTVMGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIYGK 438
            +LKDG +MGFCRTNGGSQ+VA S++GGK+FS LKPS+IISPVSPASIERIP+TGDLLLVWNNH+ I P  RGKRTPLTIAISKDEG+TW+ ++N+E NPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQIT IPLS IY K
Sbjct:  246 ELKDGRLMGFCRTNGGSQFVAYSQDGGKSFSELKPSEIISPVSPASIERIPATGDLLLVWNNHRGIDPQRRGKRTPLTIAISKDEGKTWQQIRNLETNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITFIPLSVIYEK 391          
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Match: A0A518I5A8_9PLAN (Sialidase n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I5A8_9PLAN)

HSP 1 Score: 258 bits (658), Expect = 5.440e-83
Identity = 119/146 (81.51%), Postives = 131/146 (89.73%), Query Frame = 1
Query:    1 QLKDGTVMGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIYGK 438
            +LKDG +MGFCRTNGGSQYV  S++GGK+FS LKPS ++SPVSPASIERIPSTGDLLLVWNNH  I P LRGKRTPLTIA+SKDEG+TWE +QN+EDNPNGWYCYTAIEFT  GVLLGHCAGDRTKNNGLA+SQITLIP S IY K
Sbjct:  246 ELKDGRLMGFCRTNGGSQYVEYSQDGGKSFSQLKPSHLVSPVSPASIERIPSTGDLLLVWNNHHGISPQLRGKRTPLTIAVSKDEGKTWEHIQNIEDNPNGWYCYTAIEFTPAGVLLGHCAGDRTKNNGLAQSQITLIPFSRIYEK 391          
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Match: A0A517ZG81_9PLAN (Sialidase n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZG81_9PLAN)

HSP 1 Score: 216 bits (549), Expect = 5.670e-64
Identity = 95/144 (65.97%), Postives = 122/144 (84.72%), Query Frame = 1
Query:    1 QLKDGTVMGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIY 432
            +L+DG VM FCRTNGGSQY+A S +GG+T+S L PS + +PVSPASIERIP+TGDLLLVWN+H +I   L+GKRTP TIAIS+DEG TW+ ++N++DNP+GWYCYTA+EF    VLLGHC+GDR +NNGLA+SQ+T IP+ ++Y
Sbjct:  518 ELEDGRVMLFCRTNGGSQYIAHSTDGGETWSELSPSSMQAPVSPASIERIPATGDLLLVWNDHSNIPAELKGKRTPYTIAISRDEGATWQTIRNLQDNPHGWYCYTAVEFVGGNVLLGHCSGDRRENNGLAQSQVTRIPIRSLY 661          
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Match: A0A2D6SY33_9PLAN (Sialidase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SY33_9PLAN)

HSP 1 Score: 203 bits (516), Expect = 8.150e-62
Identity = 92/144 (63.89%), Postives = 116/144 (80.56%), Query Frame = 1
Query:    1 QLKDGTVMGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIY 432
            +LKDG V+ F R+N GSQ ++ S++GG+T+S L  S I+SPVSPA+IERIP TGDLLLVWNNHQ++    RGKRTPL +AIS+D+G+TWE V+ +EDNP+GWYCYTA+EF    VLLGHCAGDR +NNGLAE+QIT   L  +Y
Sbjct:  228 ELKDGRVLLFSRSNAGSQLISYSRDGGETWSKLTTSNIVSPVSPATIERIPRTGDLLLVWNNHQNVAAEYRGKRTPLNVAISRDDGKTWERVRTLEDNPHGWYCYTALEFVDGDVLLGHCAGDRRRNNGLAETQITRFSLDWLY 371          
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Match: A0A7X8M7K1_9BACT (Exo-alpha-sialidase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7X8M7K1_9BACT)

HSP 1 Score: 201 bits (512), Expect = 3.810e-61
Identity = 90/144 (62.50%), Postives = 115/144 (79.86%), Query Frame = 1
Query:    1 QLKDGTVMGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLLLVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTAIEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIY 432
            +LKD  ++ FCRT+ GSQY+  S++ G+T+S L+PS +ISP+SPASIERIP TGDLLL+WNNH+ I PAL+GKRTP T A+SKDEGQTW  ++ + DNP+GWYCYTA+EF  D VLL +CAGDR +NNGLA +QI+  PL   Y
Sbjct:  233 ELKDHRLLLFCRTDAGSQYIGYSRDRGETWSALQPSNLISPLSPASIERIPQTGDLLLLWNNHERIDPALKGKRTPFTAAVSKDEGQTWMNLKTIHDNPHGWYCYTAVEFVGDHVLLAYCAGDRRENNGLALTQISRFPLGFFY 376          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111079.2319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PGJ6_9PLAN1.580e-9997.28Sialidase n=6 Tax=Gimesia TaxID=1649453 RepID=A0A5... [more]
A0A517ZZS4_9PLAN8.900e-9591.16Sialidase n=3 Tax=Gimesia panareensis TaxID=252797... [more]
A0A517V6J7_9PLAN2.780e-8886.30Sialidase n=8 Tax=Planctomycetaceae TaxID=126 RepI... [more]
A0A2E2C265_9PLAN2.570e-8684.25Sialidase n=4 Tax=Planctomycetaceae TaxID=126 RepI... [more]
A0A517W4E5_9PLAN9.550e-8481.51Sialidase n=2 Tax=Gimesia aquarii TaxID=2527964 Re... [more]
A0A517R8J4_9PLAN2.710e-8382.19Sialidase A n=1 Tax=Gimesia alba TaxID=2527973 Rep... [more]
A0A518I5A8_9PLAN5.440e-8381.51Sialidase n=1 Tax=Gimesia fumaroli TaxID=2527976 R... [more]
A0A517ZG81_9PLAN5.670e-6465.97Sialidase n=1 Tax=Maioricimonas rarisocia TaxID=25... [more]
A0A2D6SY33_9PLAN8.150e-6263.89Sialidase n=1 Tax=Planctomycetaceae bacterium TaxI... [more]
A0A7X8M7K1_9BACT3.810e-6162.50Exo-alpha-sialidase n=1 Tax=bacterium TaxID=186922... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111079contigM-pyrifera_M_contig111079:149..592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score258.1
Seed ortholog evalue2.4e-66
Seed eggNOG ortholog344747.PM8797T_07964
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BNR repeat-like domain
EggNOG OGs2J286@203682,COG4409@1,COG4409@2
COG Functional cat.G
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size444
Cds size423
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.7221875-CDS-M-pyrifera_M_contig111079:148..5711622815622.7221875-CDS-M-pyrifera_M_contig111079:148..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111079 149..571 -
1692277492.1467094-CDS-M-pyrifera_M_contig111079:148..5711692277492.1467094-CDS-M-pyrifera_M_contig111079:148..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111079 149..571 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.7349658-UTR-M-pyrifera_M_contig111079:571..5921622815622.7349658-UTR-M-pyrifera_M_contig111079:571..592Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111079 572..592 -
1692277492.1569417-UTR-M-pyrifera_M_contig111079:571..5921692277492.1569417-UTR-M-pyrifera_M_contig111079:571..592Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111079 572..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111079.2319.1prot_M-pyrifera_M_contig111079.2319.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111079 149..571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111079.2319.1

>prot_M-pyrifera_M_contig111079.2319.1 ID=prot_M-pyrifera_M_contig111079.2319.1|Name=mRNA_M-pyrifera_M_contig111079.2319.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MGFCRTNGGSQYVATSKNGGKTFSTLKPSQIISPVSPASIERIPSTGDLL
LVWNNHQDIQPALRGKRTPLTIAISKDEGQTWELVQNVEDNPNGWYCYTA
IEFTKDGVLLGHCAGDRTKNNGLAESQITLIPLSAIYGKD*
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mRNA from alignment at M-pyrifera_M_contig111079:149..592-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111079.2319.1 ID=mRNA_M-pyrifera_M_contig111079.2319.1|Name=mRNA_M-pyrifera_M_contig111079.2319.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig111079:149..592- (Macrocystis pyrifera P11B4 male)
CAGCTTAAAGACGGAACGGTTATGGGGTTCTGCCGCACGAATGGTGGCAG CCAGTATGTGGCCACATCGAAAAATGGTGGTAAAACATTCTCCACACTCA AACCCTCGCAGATCATTTCTCCTGTATCACCCGCGTCGATTGAGCGTATT CCCTCTACCGGGGATCTGCTGCTGGTCTGGAACAACCATCAGGACATTCA ACCGGCATTGCGCGGGAAACGGACTCCCCTGACGATTGCGATCTCAAAGG ATGAGGGGCAGACCTGGGAACTCGTCCAGAATGTGGAAGACAATCCCAAC GGGTGGTACTGTTACACTGCGATAGAATTTACAAAGGATGGCGTGCTGCT CGGACATTGTGCCGGAGACCGAACTAAGAACAACGGTCTGGCAGAATCAC AGATTACCTTGATTCCCCTCTCGGCGATTTACGGAAAAGACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111079:149..592-

>mRNA_M-pyrifera_M_contig111079.2319.1 ID=mRNA_M-pyrifera_M_contig111079.2319.1|Name=mRNA_M-pyrifera_M_contig111079.2319.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig111079:149..592- (Macrocystis pyrifera P11B4 male)
ATGGGGTTCTGCCGCACGAATGGTGGCAGCCAGTATGTGGCCACATCGAA
AAATGGTGGTAAAACATTCTCCACACTCAAACCCTCGCAGATCATTTCTC
CTGTATCACCCGCGTCGATTGAGCGTATTCCCTCTACCGGGGATCTGCTG
CTGGTCTGGAACAACCATCAGGACATTCAACCGGCATTGCGCGGGAAACG
GACTCCCCTGACGATTGCGATCTCAAAGGATGAGGGGCAGACCTGGGAAC
TCGTCCAGAATGTGGAAGACAATCCCAACGGGTGGTACTGTTACACTGCG
ATAGAATTTACAAAGGATGGCGTGCTGCTCGGACATTGTGCCGGAGACCG
AACTAAGAACAACGGTCTGGCAGAATCACAGATTACCTTGATTCCCCTCT
CGGCGATTTACGGAAAAGACTAAATGGGGTTCTGCCGCACGAATGGTGGC
AGCCAGTATGTGGCCACATCGAAAAATGGTGGTAAAACATTCTCCACACT
CAAACCCTCGCAGATCATTTCTCCTGTATCACCCGCGTCGATTGAGCGTA
TTCCCTCTACCGGGGATCTGCTGCTGGTCTGGAACAACCATCAGGACATT
CAACCGGCATTGCGCGGGAAACGGACTCCCCTGACGATTGCGATCTCAAA
GGATGAGGGGCAGACCTGGGAACTCGTCCAGAATGTGGAAGACAATCCCA
ACGGGTGGTACTGTTACACTGCGATAGAATTTACAAAGGATGGCGTGCTG
CTCGGACATTGTGCCGGAGACCGAACTAAGAACAACGGTCTGGCAGAATC
ACAGATTACCTTGATTCCCCTCTCGGCGATTTACGGAAAAGACTAA
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