mRNA_M-pyrifera_M_contig111074.2318.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111074.2318.1
Unique NamemRNA_M-pyrifera_M_contig111074.2318.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111074.2318.1 vs. uniprot
Match: UPI0019BCB01B (Uncharacterized protein n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI0019BCB01B)

HSP 1 Score: 64.3 bits (155), Expect = 3.190e-11
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 ASWGELTGQPGDYLVKSEVDKDVKYPDDIWIVAATIFEETYERV 132
            A+WG+LTG+PGD+LVK+  D+D  YP D+WIV  T+F +TYE V
Sbjct:  171 ATWGQLTGKPGDFLVKNFQDRDTAYPADVWIVDQTLFRQTYESV 214
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BLAST of mRNA_M-pyrifera_M_contig111074.2318.1 vs. uniprot
Match: A0A2D5S7Q1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5S7Q1_9PLAN)

HSP 1 Score: 62.8 bits (151), Expect = 4.980e-11
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 ASWGELTGQPGDYLVKSEVDKDVKYPDDIWIVAATIFEETYERV 132
            ASWG L+G+PGDYLVK   D DV YP+DIWIV   +F  TYE+V
Sbjct:  115 ASWGVLSGKPGDYLVKGYDDTDVDYPEDIWIVDKDLFGATYEKV 158
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BLAST of mRNA_M-pyrifera_M_contig111074.2318.1 vs. uniprot
Match: UPI00199EAA07 (Uncharacterized protein n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI00199EAA07)

HSP 1 Score: 57.8 bits (138), Expect = 1.780e-8
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 ASWGELTGQPGDYLVKSEVDKDVKYPDDIWIVAATIFEETYERVLS 138
            A+WGEL G+ GDYLVK   ++   YPDD+WIV  ++F+ TYE V S
Sbjct:  678 ATWGELKGKAGDYLVKHAANQKTLYPDDVWIVDQSLFDATYEWVDS 723
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111074.2318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI0019BCB01B3.190e-1159.09Uncharacterized protein n=1 Tax=Candidatus Sacchar... [more]
A0A2D5S7Q1_9PLAN4.980e-1163.64Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI00199EAA071.780e-854.35Uncharacterized protein n=1 Tax=Candidatus Sacchar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111074contigM-pyrifera_M_contig111074:448..591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.6884158-CDS-M-pyrifera_M_contig111074:447..5911622815622.6884158-CDS-M-pyrifera_M_contig111074:447..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111074 448..591 -
1692277492.1369538-CDS-M-pyrifera_M_contig111074:447..5911692277492.1369538-CDS-M-pyrifera_M_contig111074:447..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111074 448..591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111074.2318.1prot_M-pyrifera_M_contig111074.2318.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111074 448..591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111074.2318.1

>prot_M-pyrifera_M_contig111074.2318.1 ID=prot_M-pyrifera_M_contig111074.2318.1|Name=mRNA_M-pyrifera_M_contig111074.2318.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
ASWGELTGQPGDYLVKSEVDKDVKYPDDIWIVAATIFEETYERVLSE*
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mRNA from alignment at M-pyrifera_M_contig111074:448..591-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111074.2318.1 ID=mRNA_M-pyrifera_M_contig111074.2318.1|Name=mRNA_M-pyrifera_M_contig111074.2318.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig111074:448..591- (Macrocystis pyrifera P11B4 male)
GCCAGTTGGGGCGAACTGACCGGCCAGCCAGGAGACTATCTGGTCAAAAG
CGAAGTTGATAAGGACGTCAAGTACCCGGATGATATCTGGATCGTGGCTG
CTACGATTTTTGAAGAGACGTATGAGAGAGTCTTATCAGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111074:448..591-

>mRNA_M-pyrifera_M_contig111074.2318.1 ID=mRNA_M-pyrifera_M_contig111074.2318.1|Name=mRNA_M-pyrifera_M_contig111074.2318.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig111074:448..591- (Macrocystis pyrifera P11B4 male)
GCCAGTTGGGGCGAACTGACCGGCCAGCCAGGAGACTATCTGGTCAAAAG
CGAAGTTGATAAGGACGTCAAGTACCCGGATGATATCTGGATCGTGGCTG
CTACGATTTTTGAAGAGACGTATGAGAGAGTCTTATCAGAATGAGCCAGT
TGGGGCGAACTGACCGGCCAGCCAGGAGACTATCTGGTCAAAAGCGAAGT
TGATAAGGACGTCAAGTACCCGGATGATATCTGGATCGTGGCTGCTACGA
TTTTTGAAGAGACGTATGAGAGAGTCTTATCAGAATGA
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