mRNA_M-pyrifera_M_contig11106.2313.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11106.2313.1
Unique NamemRNA_M-pyrifera_M_contig11106.2313.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Match: D8LGV7_ECTSI (Histone deacetylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGV7_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 3.480e-42
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 2 
Query:    2 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYINFLEKVQPGPARGQGTGP 211
            YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADY+NFLEKV PGPARGQGTGP
Sbjct:   18 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYVNFLEKVMPGPARGQGTGP 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Match: A0A7S2KAM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KAM6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.600e-25
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 2 
Query:    2 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYINFLEKVQPGPAR 193
            +YYGP HPMKPHRLKLAHHL+LSY LY EM+ YRPH A+S E+ +FH  DYINFL K+ P   R
Sbjct:   37 FYYGPSHPMKPHRLKLAHHLVLSYGLYHEMECYRPHPATSGEMTKFHSEDYINFLSKITPDNLR 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Match: A0A225UVW0_9STRA (Histone deacetylase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UVW0_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 9.220e-25
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 2 
Query:    2 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYINFLEKVQPGPARGQGT 205
            +YYGPGHPMKPHR+KLAHHL+++Y+LY +MD++ PHLAS+ E+  FH  +YI FL++V P   R   T
Sbjct:   19 FYYGPGHPMKPHRMKLAHHLVVNYDLYHKMDIFEPHLASADEMKVFHAPEYIEFLQRVSPAKQRDMAT 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Match: A0A7R9W4J1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4J1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.830e-24
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:    2 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYINFLEKVQPGPAR 193
            +YYGP HPMKPHR+KLAHHL+LSY+LYR+M+VYRPH A+  E+  FH  DY+NFL ++ P   R
Sbjct:   18 FYYGPSHPMKPHRIKLAHHLILSYDLYRKMEVYRPHPATPGEMAVFHSEDYVNFLSRITPDNLR 81
[Close]
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Match: A0A067BT41_SAPPC (Histone deacetylase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BT41_SAPPC)

HSP 1 Score: 99.4 bits (246), Expect = 2.240e-24
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 2 
Query:    2 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYINFLEKVQPGPARGQGT 205
            +YYGPGHPMKPHRLKLAHHL+L+Y+L+R+M+V++PH AS  E+  FH ADY++FL+KV P   +   T
Sbjct:   17 FYYGPGHPMKPHRLKLAHHLVLNYDLFRKMEVFQPHWASPEEIKAFHAADYVDFLQKVSPSTEKSMQT 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Match: A0A5A8DZS2_CAFRO (Hist_deacetyl domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DZS2_CAFRO)

HSP 1 Score: 96.7 bits (239), Expect = 2.360e-24
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 2 
Query:    2 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYINFLEKVQP 181
            YYYG GHPMKP R+KLAHHLLLSY LYR+++VYRPHLA++ E+  FH +DYI+FL ++ P
Sbjct:   19 YYYGAGHPMKPVRMKLAHHLLLSYGLYRQLEVYRPHLATAEEMKEFHSSDYIDFLSRITP 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Match: W7UAJ6_9STRA (Histone deacetylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAJ6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.130e-24
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:    2 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYINFLEKVQPGPAR 193
            YYYGPGHPMKPHRLKL HHL+L Y LYR+M+VYRPH+A++ EL +FH  +Y+NFL +V P   R
Sbjct:   67 YYYGPGHPMKPHRLKLTHHLVLGYGLYRKMEVYRPHIATTQELQKFHSQEYVNFLSRVNPDMGR 130
[Close]
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Match: A0A7S3JYQ5_9STRA (Histone deacetylase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYQ5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.780e-24
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:    2 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYINFLEKVQPGPAR 193
            +YYGPGHPMKPHRLKL HHLLL+Y LYR+++VYRPHLASS E+ +FH  DYI FL +V P   R
Sbjct:   18 FYYGPGHPMKPHRLKLTHHLLLAYGLYRKLEVYRPHLASSEEMTKFHAEDYIEFLRRVSPDNVR 81
[Close]
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Match: A0A7S1BZE0_9STRA (Histone deacetylase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZE0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.550e-24
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:    2 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYINFLEKVQPGPAR 193
            YYYGP HPMKPHRLKLAHHL+LSY LYR+M+VYRPH A+  E+M FH  DY+NFL ++ P   R
Sbjct:   55 YYYGPSHPMKPHRLKLAHHLILSYGLYRKMEVYRPHAATPGEMMAFHAEDYVNFLSRITPDNLR 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Match: A0A7S2GCX6_9STRA (Histone deacetylase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCX6_9STRA)

HSP 1 Score: 102 bits (253), Expect = 8.590e-24
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 2 
Query:    2 YYYGPGHPMKPHRLKLAHHLLLSYNLYREMDVYRPHLASSTELMRFHQADYINFLEKVQPGPA 190
            YYYGPGHPMKPHRLKL HHLLL+Y LYR+MDVYRPH A + E+ RFH  +YI FL+++ P  A
Sbjct:   19 YYYGPGHPMKPHRLKLTHHLLLTYGLYRKMDVYRPHRAGAEEMARFHSPEYIEFLKRITPDTA 81
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11106.2313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGV7_ECTSI3.480e-4297.14Histone deacetylase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S2KAM6_9STRA1.600e-2567.19Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A225UVW0_9STRA9.220e-2557.35Histone deacetylase (Fragment) n=1 Tax=Phytophthor... [more]
A0A7R9W4J1_9STRA1.830e-2462.50Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A067BT41_SAPPC2.240e-2460.29Histone deacetylase n=1 Tax=Saprolegnia parasitica... [more]
A0A5A8DZS2_CAFRO2.360e-2466.67Hist_deacetyl domain-containing protein n=1 Tax=Ca... [more]
W7UAJ6_9STRA3.130e-2465.63Histone deacetylase n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S3JYQ5_9STRA4.780e-2468.75Histone deacetylase n=1 Tax=Aureoumbra lagunensis ... [more]
A0A7S1BZE0_9STRA6.550e-2467.19Histone deacetylase (Fragment) n=1 Tax=Corethron h... [more]
A0A7S2GCX6_9STRA8.590e-2468.25Histone deacetylase n=1 Tax=Florenciella parvula T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11106contigM-pyrifera_M_contig11106:8564..9753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size214
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.3861299-CDS-M-pyrifera_M_contig11106:8563..86871622815622.3861299-CDS-M-pyrifera_M_contig11106:8563..8687Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11106 8564..8687 +
1692277491.9831107-CDS-M-pyrifera_M_contig11106:8563..86871692277491.9831107-CDS-M-pyrifera_M_contig11106:8563..8687Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11106 8564..8687 +
1622815622.3962348-CDS-M-pyrifera_M_contig11106:9663..97521622815622.3962348-CDS-M-pyrifera_M_contig11106:9663..9752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11106 9664..9752 +
1692277491.993749-CDS-M-pyrifera_M_contig11106:9663..97521692277491.993749-CDS-M-pyrifera_M_contig11106:9663..9752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11106 9664..9752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11106.2313.1prot_M-pyrifera_M_contig11106.2313.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11106 8564..9752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11106.2313.1

>prot_M-pyrifera_M_contig11106.2313.1 ID=prot_M-pyrifera_M_contig11106.2313.1|Name=mRNA_M-pyrifera_M_contig11106.2313.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
LLLWAWPPHEAAPPETGPPPPAIVQSLPRDGRVPTPPSQQYRADAVPPSG
LHQLSRESSARSGARSGDRSS
back to top

mRNA from alignment at M-pyrifera_M_contig11106:8564..9753+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11106.2313.1 ID=mRNA_M-pyrifera_M_contig11106.2313.1|Name=mRNA_M-pyrifera_M_contig11106.2313.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1190bp|location=Sequence derived from alignment at M-pyrifera_M_contig11106:8564..9753+ (Macrocystis pyrifera P11B4 male)
TTACTACTATGGGCCTGGCCACCCCATGAAGCCGCACCGCCTGAAACTGG
CCCACCACCTCCTGCTATCGTACAATCTCTACCGAGAGATGGACGTGTAC
CGACCCCACCTAGCCAGCAGTACCGTGAGTTGTTGTCAGGGAGAGGTTTG
GATCGGTTTTGGTTCGGTTCGGTTCGGCTCGATTTGGTTTTGTTCTGTTC
GGTTTGATTTGGTTGGGTTTTGAACTGGTTTTGGTTTGATTTGGTTTGCT
TTGGTTTTGGATCGTTTTTTCAATGTTTGGTTTGAATTGGTTTTTGATTG
GTCTCAGTTTGATTTGGTTTTTTATTGGCTTTGGTTCGATTTGGTTTGAA
CTGGTGTGGAATTGTTTTTGGTTTTCATGGTTTTTGATTTGTTTTGGTTT
GTTTTGGTTTGGTCTGGTTCGGTTCGTGGCTGGTTTGTGTTTGTTTGCTG
GTCGTCTTCTCTCCTACAACCTCTGCCGAGAGATAGGACGTCTATCATCC
CCCCCCCACATGGGAAGCAAGCAGTACCGCGAGTTTGATTGATACTTCCA
CAGGGAGAAACTTTGTATTGTTTAATTTGATTTTTTTCTGTTCGATTGGT
GTGTATGCCATTTGCTTGTCGTATTTTCTCCTATAAACTCTATCAAGAGA
CATAAGACGTCTACGACCCCTAACCCGACCCCTCGATCGCGAGTTAGTGT
TTTAGGGAGGGGTTTTGGTTTGGTTTGGGTTTAGTTTGGTTTGAGTTGGT
TCGGTTTGTGTTGGCTGTGTTTTCTGTTCGTTTTGTCTGGTCTGTTTTGG
TTTAGCCGGTTTGTTCATGTTACTTTTCGCTGGTCGTTTTTGTTGATCTC
GTAGAATTTGTTTTGTTTGGGCTTGGTTTGGTTCTGTGTGGTTCTGGTGC
GGCTTGATTTGATTTGGTTCGGTTCGGTTCGGTTCGGTTCGGTTTCGTTT
TTTAACGGCACGGTTTTCACAATTGTTTGGGAATCGCCGTCTTTAGCCAG
GACCTCAACAGCAGTATATTGTTTCGTCTTCTCGTTGGTGTGCGTGCGTG
CATCCATGCCCGTGCGTGTGGGTGTTGCGTTGGACCCGACCCGTGTGCAG
GAGCTGATGCGGTTCCACCAAGCGGATTACATCAACTTTCTCGAGAAAGT
TCAGCCCGGTCCGGCGCGAGGTCAGGGGACCGGTCCTCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11106:8564..9753+

>mRNA_M-pyrifera_M_contig11106.2313.1 ID=mRNA_M-pyrifera_M_contig11106.2313.1|Name=mRNA_M-pyrifera_M_contig11106.2313.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig11106:8564..9753+ (Macrocystis pyrifera P11B4 male)
TTACTACTATGGGCCTGGCCACCCCATGAAGCCGCACCGCCTGAAACTGG
CCCACCACCTCCTGCTATCGTACAATCTCTACCGAGAGATGGACGTGTAC
CGACCCCACCTAGCCAGCAGTACCTTACTACTATGGGCCTGGCCACCCCA
TGAAGCCGCACCGCCTGAAACTGGCCCACCACCTCCTGCTATCGTACAAT
CTCTACCGAGAGATGGACGTGTACCGACCCCACCTAGCCAGCAGTACCGA
GCTGATGCGGTTCCACCAAGCGGATTACATCAACTTTCTCGAGAAAGTTC
AGCCCGGTCCGGCGCGAGGTCAGGGGACCGGTCCTCAGAGCTGATGCGGT
TCCACCAAGCGGATTACATCAACTTTCTCGAGAAAGTTCAGCCCGGTCCG
GCGCGAGGTCAGGGGACCGGTCCTCA
back to top