mRNA_M-pyrifera_M_contig111050.2311.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111050.2311.1
Unique NamemRNA_M-pyrifera_M_contig111050.2311.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Match: A0A182VSR0_9DIPT (Voltage-dependent L-type calcium channel subunit alpha n=1 Tax=Anopheles minimus TaxID=112268 RepID=A0A182VSR0_9DIPT)

HSP 1 Score: 80.9 bits (198), Expect = 7.420e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 KSLYCLRMDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTP-SDVLFWFDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS 267
            KSL+ L+  NR R  C  +   T F   ILLCI+ +S+MLA EDP +A +  + +L  FD  F AVF  E+++K+IA+GF LH GA+ RS
Sbjct:  675 KSLFLLKPTNRFRQFCHWLCNHTVFGNIILLCIMLSSVMLAAEDPLNANSERNQILNQFDFFFTAVFAIELILKVIAYGFILHKGAFCRS 764
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BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Match: A0A182IP03_9DIPT (Voltage-dependent L-type calcium channel subunit alpha n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182IP03_9DIPT)

HSP 1 Score: 80.9 bits (198), Expect = 7.420e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 KSLYCLRMDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTP-SDVLFWFDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS 267
            KSL+ L+  NR R  C  +   T F   ILLCI+ +S+MLA EDP +A +  + +L  FD  F AVF  E+++K+IA+GF LH GA+ RS
Sbjct:  721 KSLFLLKPTNRFRKFCHWLCNHTVFGNIILLCIMLSSVMLAAEDPLNANSERNQILNQFDFFFTAVFAIELILKVIAYGFILHKGAFCRS 810
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BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Match: A0A182N8Y0_9DIPT (Voltage-dependent L-type calcium channel subunit alpha n=5 Tax=Cellia TaxID=44534 RepID=A0A182N8Y0_9DIPT)

HSP 1 Score: 80.9 bits (198), Expect = 7.430e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 KSLYCLRMDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTP-SDVLFWFDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS 267
            KSL+ L+  NR R  C  +   T F   ILLCI+ +S+MLA EDP +A +  + +L  FD  F AVF  E+++K+IA+GF LH GA+ RS
Sbjct:  744 KSLFLLKPTNRFRQFCHWLCNHTVFGNIILLCIMLSSVMLAAEDPLNANSERNQILNQFDFFFTAVFAIELILKVIAYGFILHKGAFCRS 833
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BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Match: UPI0016587EC4 (muscle calcium channel subunit alpha-1-like isoform X1 n=3 Tax=Cellia TaxID=44534 RepID=UPI0016587EC4)

HSP 1 Score: 80.9 bits (198), Expect = 7.440e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 KSLYCLRMDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTP-SDVLFWFDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS 267
            KSL+ L+  NR R  C  +   T F   ILLCI+ +S+MLA EDP +A +  + +L  FD  F AVF  E+++K+IA+GF LH GA+ RS
Sbjct:  888 KSLFLLKPTNRFRQFCHWLCNHTVFGNIILLCIMLSSVMLAAEDPLNANSERNQILNQFDFFFTAVFAIELILKVIAYGFILHKGAFCRS 977
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BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Match: A0A4Y0ARI5_ANOFN (Voltage-dependent L-type calcium channel subunit alpha n=5 Tax=Endopterygota TaxID=33392 RepID=A0A4Y0ARI5_ANOFN)

HSP 1 Score: 80.9 bits (198), Expect = 7.520e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 KSLYCLRMDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTP-SDVLFWFDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS 267
            KSL+ L+  NR R  C  +   T F   ILLCI+ +S+MLA EDP +A +  + +L  FD  F AVF  E+++K+IA+GF LH GA+ RS
Sbjct: 2891 KSLFLLKPTNRFRQFCHWLCNHTVFGNIILLCIMLSSVMLAAEDPLNANSERNQILNQFDFFFTAVFAIELILKVIAYGFILHKGAFCRS 2980
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BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Match: A0A182XPT2_ANOQN (Ion_trans domain-containing protein n=2 Tax=gambiae species complex TaxID=44542 RepID=A0A182XPT2_ANOQN)

HSP 1 Score: 76.3 bits (186), Expect = 1.860e-15
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    4 SLYCLRMDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTP-SDVLFWFDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS 267
            +L+ L   NR R  C  +   T F   ILLCI+ +S+MLA EDP +A +  + +L  FD  F AVF  E+++K+IA+GF LH GA+ RS
Sbjct:   26 ALFILSNTNRFRQFCHWLCNHTVFGNIILLCIMLSSVMLAAEDPLNANSERNQILNKFDFFFTAVFAIELILKVIAYGFILHKGAFCRS 114
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BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Match: A0A2M4CP11_ANODA (Putative voltage-dependent p/q type calcium channel (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CP11_ANODA)

HSP 1 Score: 79.3 bits (194), Expect = 2.560e-15
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 KSLYCLRMDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTP-SDVLFWFDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS 267
            +SL+ L+  NR R  C  +   T F   ILLCI+ +S+MLA EDP +A +  + +L  FD  F AVF  E+++K+IA+GF LH GA+ RS
Sbjct:  334 QSLFLLKPTNRFRLFCHWLCNHTVFGNIILLCIMLSSVMLAAEDPLNANSERNQILNQFDFFFTAVFAIELILKVIAYGFILHKGAFCRS 423
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BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Match: W5JR46_ANODA (Voltage-dependent L-type calcium channel subunit alpha n=3 Tax=Nyssorhynchus TaxID=44543 RepID=W5JR46_ANODA)

HSP 1 Score: 79.3 bits (194), Expect = 2.580e-15
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 KSLYCLRMDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTP-SDVLFWFDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS 267
            +SL+ L+  NR R  C  +   T F   ILLCI+ +S+MLA EDP +A +  + +L  FD  F AVF  E+++K+IA+GF LH GA+ RS
Sbjct:  713 QSLFLLKPTNRFRLFCHWLCNHTVFGNIILLCIMLSSVMLAAEDPLNANSERNQILNQFDFFFTAVFAIELILKVIAYGFILHKGAFCRS 802
[Close]
BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Match: Q5TNR8_ANOGA (AGAP010296-PA (Fragment) n=1 Tax=Anopheles gambiae TaxID=7165 RepID=Q5TNR8_ANOGA)

HSP 1 Score: 76.3 bits (186), Expect = 2.370e-14
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    4 SLYCLRMDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTP-SDVLFWFDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS 267
            +L+ L   NR R  C  +   T F   ILLCI+ +S+MLA EDP +A +  + +L  FD  F AVF  E+++K+IA+GF LH GA+ RS
Sbjct:  210 ALFILSNTNRFRQFCHWLCNHTVFGNIILLCIMLSSVMLAAEDPLNANSERNQILNKFDFFFTAVFAIELILKVIAYGFILHKGAFCRS 298
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BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Match: A0A8D8EWB2_CULPI (Voltage-dependent calcium channel type D subunit alpha-1 (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8EWB2_CULPI)

HSP 1 Score: 73.2 bits (178), Expect = 3.040e-14
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    4 SLYCLRMDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTP-SDVLFWFDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS 267
            S + L   NR R  C  +   + F   IL+CI+ +S MLA EDP +A +  + +L +FD  F +VFT E+L+K+I++GF  H GA+ RS
Sbjct:   35 SFFILSQTNRFRVFCHWLCNHSTFGNIILVCIMFSSAMLAAEDPLNANSERNQILNYFDYFFTSVFTIELLLKLISYGFVFHEGAFCRS 123
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111050.2311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182VSR0_9DIPT7.420e-1646.67Voltage-dependent L-type calcium channel subunit a... [more]
A0A182IP03_9DIPT7.420e-1646.67Voltage-dependent L-type calcium channel subunit a... [more]
A0A182N8Y0_9DIPT7.430e-1646.67Voltage-dependent L-type calcium channel subunit a... [more]
UPI0016587EC47.440e-1646.67muscle calcium channel subunit alpha-1-like isofor... [more]
A0A4Y0ARI5_ANOFN7.520e-1646.67Voltage-dependent L-type calcium channel subunit a... [more]
A0A182XPT2_ANOQN1.860e-1544.94Ion_trans domain-containing protein n=2 Tax=gambia... [more]
A0A2M4CP11_ANODA2.560e-1545.56Putative voltage-dependent p/q type calcium channe... [more]
W5JR46_ANODA2.580e-1545.56Voltage-dependent L-type calcium channel subunit a... [more]
Q5TNR8_ANOGA2.370e-1444.94AGAP010296-PA (Fragment) n=1 Tax=Anopheles gambiae... [more]
A0A8D8EWB2_CULPI3.040e-1441.57Voltage-dependent calcium channel type D subunit a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111050contigM-pyrifera_M_contig111050:4..270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score72.4
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog43151.ADAC002447-PA
KEGG koko:K04851
KEGG TC1.A.1.11.1,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0003008,GO:0003012,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005245,GO:0005261,GO:0005262,GO:0005575,GO:0005623,GO:0005886,GO:0005891,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006936,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0008150,GO:0008324,GO:0008331,GO:0009987,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0016322,GO:0016323,GO:0016324,GO:0019722,GO:0019932,GO:0021700,GO:0022008,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030154,GO:0030182,GO:0031224,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0034702,GO:0034703,GO:0034704,GO:0035556,GO:0042044,GO:0042045,GO:0042391,GO:0042551,GO:0044425,GO:0044459,GO:0044464,GO:0045177,GO:0046873,GO:0048468,GO:0048469,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051899,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070633,GO:0070838,GO:0071695,GO:0071944,GO:0072511,GO:0086010,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:1902495,GO:1990351
EggNOG free text desc.Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1C gives rise to L-type calcium currents. Long-lasting (L-type) calcium channels belong to the 'high-voltage activated' (HVA) group. They are blocked by dihydropyridines (DHP), phenylalkylamines, benzothiazepines, and by omega-agatoxin-IIIA (omega-Aga-IIIA). They are however insensitive to omega-conotoxin- GVIA (omega-CTx-GVIA) and omega-agatoxin-IVA (omega-Aga-IVA). Calcium channels containing the alpha-1C subunit play an important role in excitation-contraction coupling in the heart. Binding of calmodulin or CABP1 at the same regulatory sites results in an opposit effects on the channel function
EggNOG OGs38BYK@33154,3BAHQ@33208,3CSUW@33213,3SKE9@50557,41X89@6656,44XNC@7147,45JN3@7148,KOG2301@1,KOG2301@2759
COG Functional cat.P
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size267
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.2935653-CDS-M-pyrifera_M_contig111050:3..2491622815622.2935653-CDS-M-pyrifera_M_contig111050:3..249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111050 4..249 -
1692277491.9428942-CDS-M-pyrifera_M_contig111050:3..2491692277491.9428942-CDS-M-pyrifera_M_contig111050:3..249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111050 4..249 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.3053613-UTR-M-pyrifera_M_contig111050:249..2701622815622.3053613-UTR-M-pyrifera_M_contig111050:249..270Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111050 250..270 -
1692277491.952885-UTR-M-pyrifera_M_contig111050:249..2701692277491.952885-UTR-M-pyrifera_M_contig111050:249..270Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111050 250..270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111050.2311.1prot_M-pyrifera_M_contig111050.2311.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111050 4..249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111050.2311.1

>prot_M-pyrifera_M_contig111050.2311.1 ID=prot_M-pyrifera_M_contig111050.2311.1|Name=mRNA_M-pyrifera_M_contig111050.2311.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MDNRVRAICFTVATSTPFDAFILLCIVTNSIMLALEDPGHAPTPSDVLFW
FDLAFQAVFTAEMLIKIIAFGFALHAGAYLRS
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mRNA from alignment at M-pyrifera_M_contig111050:4..270-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111050.2311.1 ID=mRNA_M-pyrifera_M_contig111050.2311.1|Name=mRNA_M-pyrifera_M_contig111050.2311.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig111050:4..270- (Macrocystis pyrifera P11B4 male)
AAATCGCTGTACTGCTTGCGCATGGACAACCGAGTCCGCGCCATCTGCTT
CACAGTCGCCACTTCCACACCCTTTGACGCCTTCATCCTCCTCTGTATCG
TCACCAACAGCATCATGCTGGCGCTGGAAGACCCCGGCCACGCACCTACC
CCCTCGGACGTCCTGTTCTGGTTCGACCTGGCCTTCCAAGCCGTGTTCAC
TGCTGAGATGCTCATCAAGATCATTGCGTTCGGTTTTGCGCTGCATGCAG
GCGCGTACCTTCGCAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111050:4..270-

>mRNA_M-pyrifera_M_contig111050.2311.1 ID=mRNA_M-pyrifera_M_contig111050.2311.1|Name=mRNA_M-pyrifera_M_contig111050.2311.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig111050:4..270- (Macrocystis pyrifera P11B4 male)
ATGGACAACCGAGTCCGCGCCATCTGCTTCACAGTCGCCACTTCCACACC
CTTTGACGCCTTCATCCTCCTCTGTATCGTCACCAACAGCATCATGCTGG
CGCTGGAAGACCCCGGCCACGCACCTACCCCCTCGGACGTCCTGTTCTGG
TTCGACCTGGCCTTCCAAGCCGTGTTCACTGCTGAGATGCTCATCAAGAT
CATTGCGTTCGGTTTTGCGCTGCATGCAGGCGCGTACCTTCGCAGCATGG
ACAACCGAGTCCGCGCCATCTGCTTCACAGTCGCCACTTCCACACCCTTT
GACGCCTTCATCCTCCTCTGTATCGTCACCAACAGCATCATGCTGGCGCT
GGAAGACCCCGGCCACGCACCTACCCCCTCGGACGTCCTGTTCTGGTTCG
ACCTGGCCTTCCAAGCCGTGTTCACTGCTGAGATGCTCATCAAGATCATT
GCGTTCGGTTTTGCGCTGCATGCAGGCGCGTACCTTCGCAGC
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