mRNA_M-pyrifera_M_contig111042.2310.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111042.2310.1
Unique NamemRNA_M-pyrifera_M_contig111042.2310.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Match: A0A1M2V687_TRAPU (Vacuolar protein sorting-associated protein 9a n=2 Tax=Trametes TaxID=5324 RepID=A0A1M2V687_TRAPU)

HSP 1 Score: 74.3 bits (181), Expect = 2.790e-12
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHFLLNVSARGLSHVSQPQLDLILSGAID-IPEQATDEGER 261
            F+P+L+  V++A+P HL SN ++I R+RNPAKL  E GYYL+ L  AV F+  +    LSH+SQ + +  +  AI  +P   T   ER
Sbjct:  407 FVPILIYTVLKANPPHLLSNVEFINRFRNPAKLQSEAGYYLSSLMGAVSFVETMDHTSLSHISQEEFERNVEDAIQSLPSTGTQTPER 494          
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Match: A0A1B7N464_9AGAM (Uncharacterized protein n=2 Tax=Rhizopogon TaxID=5375 RepID=A0A1B7N464_9AGAM)

HSP 1 Score: 73.9 bits (180), Expect = 3.810e-12
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHFLLNVSARGLSHVSQPQLDLILSGAI 225
            F+P+L+ VV++A+P HL SN ++I R+RNPAKL  E GYYL+ L  AV F+ N+    LS++SQ + +  +  AI
Sbjct:  455 FVPILIYVVLKANPEHLLSNVEFINRFRNPAKLQSEAGYYLSSLMGAVQFIENMDHTSLSNISQEEFERNVEAAI 529          
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Match: J5T773_TRIAS (Uncharacterized protein n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J5T773_TRIAS)

HSP 1 Score: 73.9 bits (180), Expect = 3.930e-12
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHFLLNVSARGLSHVSQPQLDLILSGAI-DIPEQAT 246
            F+P+L+ VV+RASP ++ SN +YI R+RNP KL  E GYYL+ L  A+ F+  + A  LS+++Q + +  +  AI D+P   T
Sbjct:  558 FIPILIFVVLRASPDNMLSNLEYINRFRNPEKLTGEAGYYLSSLSGAIQFIETMDASSLSNITQDEFEANVEKAIQDLPSSPT 640          
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Match: A0A1Y2HRS5_9FUNG (VPS9 domain-containing protein (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HRS5_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 6.190e-12
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHFLLNVSARGLSHVS 189
            FLP+L+  V++A+P HLHSN QYI+R+RNPAKL  E GYYLT L  AV F+      GL H S
Sbjct:  167 FLPLLIYTVLQANPPHLHSNMQYIQRFRNPAKLQSEAGYYLTNLMGAVSFI-----EGLDHTS 224          
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Match: A0A427XFS1_9TREE (Uncharacterized protein n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427XFS1_9TREE)

HSP 1 Score: 73.2 bits (178), Expect = 7.050e-12
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHFLLNVSARGLSHVSQPQLDLILSGAI-DIPEQAT 246
            F+P+L+ VV+RASP ++ SN +YI R+RNP KL  E GYYL+ L+ A+ F+  + A  LS+++Q + +L +  AI ++P   T
Sbjct:  460 FVPILIFVVLRASPDNMLSNVEYINRFRNPEKLQGEAGYYLSSLQGAIAFIETMDASSLSNITQEEFELNVEKAIQELPASPT 542          
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Match: A0A550BZK7_9AGAR (Uncharacterized protein n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550BZK7_9AGAR)

HSP 1 Score: 73.2 bits (178), Expect = 7.140e-12
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHFLLNVSARGLSHVSQPQLDLILSGAID-IPEQAT 246
            F+P+L+ VV++A+P HL SN ++I+R+RNPAKL  E GYYL+ L  AV F+  +    LS+++Q   +  +  AI  +P QAT
Sbjct:  490 FIPLLIFVVLKANPEHLLSNVEFIQRFRNPAKLQSEAGYYLSSLMGAVSFIETMDHTSLSNITQEDFERNVEQAIQSLPRQAT 572          
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Match: A0A060SFR3_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SFR3_PYCCI)

HSP 1 Score: 72.8 bits (177), Expect = 9.220e-12
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHFLLNVSARGLSHVSQPQLDLILSGAID-IPEQATDEGER 261
            FLP+L+ VVI+A+P HL SN ++I R+RNPAKL  E GYYL+ L  AV F+  +    LS+++Q + +  +  AI  +P   +   ER
Sbjct:  425 FLPILIYVVIKANPPHLLSNVEFINRFRNPAKLQSEAGYYLSSLMGAVSFIETMDHTSLSNITQEEFERNVEDAIQSLPSTGSQTPER 512          
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Match: A0A1Y2IWP1_PYCCO (Uncharacterized protein n=1 Tax=Trametes coccinea BRFM310 TaxID=1353009 RepID=A0A1Y2IWP1_PYCCO)

HSP 1 Score: 72.4 bits (176), Expect = 1.300e-11
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHFLLNVSARGLSHVSQPQLDLILSGAID-IPEQATDEGER 261
            FLP+L+ VVI+A+P HL SN ++I R+RNPAKL  E GYYL+ L  AV F+  +    LS+++Q + +  +  AI  +P   +   ER
Sbjct:  423 FLPILIYVVIKANPPHLLSNVEFISRFRNPAKLQSEAGYYLSSLMGAVSFIETMDHTSLSNITQEEFERNVEDAIQSLPSTGSQTPER 510          
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Match: M2RK85_CERS8 (Uncharacterized protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2RK85_CERS8)

HSP 1 Score: 72.0 bits (175), Expect = 1.760e-11
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHFLLNVSARGLSHVSQPQLDLILSGAID-IPEQATDEGERVVETRGPP 285
            F+PVL+ VV++A+P HL SN ++I R+RNPAKL  E GYYL+ L  AV F+  +    LS+++Q + +  +  AI  +P   T   E    T  PP
Sbjct:  428 FIPVLIYVVLKANPRHLLSNVEFINRFRNPAKLQSEAGYYLSSLMGAVSFIETMDHASLSNITQDEFERNVESAIQSLPSTGTHTPESA--TSAPP 521          
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Match: A0A4S8MJX4_DENBC (Uncharacterized protein n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8MJX4_DENBC)

HSP 1 Score: 72.0 bits (175), Expect = 1.800e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHFLLNVSARGLSHVSQPQLDLILSGAIDIPEQATDEG 255
            FLP+L+ VVI+++P HL SN ++I+R+RNPAKL  E GYYL+ L  AV F+  +    LS +S+ + +  L   I + E     G
Sbjct:  227 FLPILIFVVIKSNPPHLISNLEFIQRFRNPAKLSSEAGYYLSSLYGAVSFVETMDYASLSGISKEEFEQELERVIQVQEGGEGSG 311          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111042.2310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2V687_TRAPU2.790e-1243.18Vacuolar protein sorting-associated protein 9a n=2... [more]
A0A1B7N464_9AGAM3.810e-1246.67Uncharacterized protein n=2 Tax=Rhizopogon TaxID=5... [more]
J5T773_TRIAS3.930e-1243.37Uncharacterized protein n=2 Tax=Trichosporon asahi... [more]
A0A1Y2HRS5_9FUNG6.190e-1257.14VPS9 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A427XFS1_9TREE7.050e-1243.37Uncharacterized protein n=1 Tax=Apiotrichum porosu... [more]
A0A550BZK7_9AGAR7.140e-1244.58Uncharacterized protein n=1 Tax=Auriculariopsis am... [more]
A0A060SFR3_PYCCI9.220e-1243.18Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A1Y2IWP1_PYCCO1.300e-1143.18Uncharacterized protein n=1 Tax=Trametes coccinea ... [more]
M2RK85_CERS81.760e-1141.67Uncharacterized protein n=1 Tax=Ceriporiopsis subv... [more]
A0A4S8MJX4_DENBC1.800e-1142.35Uncharacterized protein n=1 Tax=Dendrothele bispor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111042contigM-pyrifera_M_contig111042:2..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.9
Seed ortholog evalue8.2e-11
Seed eggNOG ortholog82508.K1VC11
Preferred namevps901
KEGG koko:K20131
Hectar predicted targeting categorysignal peptide
GOsGO:0000011,GO:0003674,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006996,GO:0007033,GO:0007034,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019899,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0036010,GO:0042886,GO:0043130,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048308,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0098772
EggNOG free text desc.Domain present in VPS9
EggNOG OGs38JP8@33154,3NY9E@4751,3UYIA@5204,3VER6@5234,COG0666@1,KOG2319@2759
COG Functional cat.U
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.2569811-CDS-M-pyrifera_M_contig111042:1..5321622815622.2569811-CDS-M-pyrifera_M_contig111042:1..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111042 2..532 +
1692277491.9293315-CDS-M-pyrifera_M_contig111042:1..5321692277491.9293315-CDS-M-pyrifera_M_contig111042:1..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111042 2..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111042.2310.1prot_M-pyrifera_M_contig111042.2310.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111042 2..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111042.2310.1

>prot_M-pyrifera_M_contig111042.2310.1 ID=prot_M-pyrifera_M_contig111042.2310.1|Name=mRNA_M-pyrifera_M_contig111042.2310.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
FLPVLLIVVIRASPAHLHSNTQYIRRYRNPAKLIEEPGYYLTQLESAVHF
LLNVSARGLSHVSQPQLDLILSGAIDIPEQATDEGERVVETRGPPPPKAA
AKATRESGARESESDGKESESGGGTAVTLEALLEGCDMGRYAFLEKGVEE
LRIGEVGLLLEEYRRMARQNELLKKVL
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mRNA from alignment at M-pyrifera_M_contig111042:2..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111042.2310.1 ID=mRNA_M-pyrifera_M_contig111042.2310.1|Name=mRNA_M-pyrifera_M_contig111042.2310.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig111042:2..532+ (Macrocystis pyrifera P11B4 male)
TTCCTGCCGGTGCTGCTGATCGTGGTGATCCGCGCCAGCCCCGCGCACCT CCACAGCAACACGCAGTACATCAGGCGCTACAGAAACCCCGCCAAGCTCA TCGAGGAGCCGGGCTACTACCTCACGCAGCTCGAGTCCGCGGTGCACTTC CTCCTCAACGTCAGCGCGCGCGGCCTCTCGCACGTGAGCCAGCCCCAGCT GGACCTCATTCTCTCCGGCGCCATCGACATTCCCGAGCAGGCGACGGACG AGGGCGAGAGAGTGGTGGAGACCAGGGGCCCACCGCCCCCCAAGGCGGCG GCAAAGGCCACGCGCGAGAGCGGCGCCAGAGAGAGCGAGAGCGACGGCAA AGAGAGCGAGAGCGGCGGTGGCACTGCGGTGACGCTCGAGGCTCTGCTGG AGGGCTGCGACATGGGCCGCTATGCGTTCCTGGAGAAGGGTGTGGAAGAG CTGCGCATCGGCGAGGTGGGCCTGCTGCTGGAGGAGTACCGCCGCATGGC CCGGCAGAACGAGCTGCTCAAGAAGGTACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111042:2..532+

>mRNA_M-pyrifera_M_contig111042.2310.1 ID=mRNA_M-pyrifera_M_contig111042.2310.1|Name=mRNA_M-pyrifera_M_contig111042.2310.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig111042:2..532+ (Macrocystis pyrifera P11B4 male)
TTCCTGCCGGTGCTGCTGATCGTGGTGATCCGCGCCAGCCCCGCGCACCT
CCACAGCAACACGCAGTACATCAGGCGCTACAGAAACCCCGCCAAGCTCA
TCGAGGAGCCGGGCTACTACCTCACGCAGCTCGAGTCCGCGGTGCACTTC
CTCCTCAACGTCAGCGCGCGCGGCCTCTCGCACGTGAGCCAGCCCCAGCT
GGACCTCATTCTCTCCGGCGCCATCGACATTCCCGAGCAGGCGACGGACG
AGGGCGAGAGAGTGGTGGAGACCAGGGGCCCACCGCCCCCCAAGGCGGCG
GCAAAGGCCACGCGCGAGAGCGGCGCCAGAGAGAGCGAGAGCGACGGCAA
AGAGAGCGAGAGCGGCGGTGGCACTGCGGTGACGCTCGAGGCTCTGCTGG
AGGGCTGCGACATGGGCCGCTATGCGTTCCTGGAGAAGGGTGTGGAAGAG
CTGCGCATCGGCGAGGTGGGCCTGCTGCTGGAGGAGTACCGCCGCATGGC
CCGGCAGAACGAGCTGCTCAAGAAGGTACTGTTCCTGCCGGTGCTGCTGA
TCGTGGTGATCCGCGCCAGCCCCGCGCACCTCCACAGCAACACGCAGTAC
ATCAGGCGCTACAGAAACCCCGCCAAGCTCATCGAGGAGCCGGGCTACTA
CCTCACGCAGCTCGAGTCCGCGGTGCACTTCCTCCTCAACGTCAGCGCGC
GCGGCCTCTCGCACGTGAGCCAGCCCCAGCTGGACCTCATTCTCTCCGGC
GCCATCGACATTCCCGAGCAGGCGACGGACGAGGGCGAGAGAGTGGTGGA
GACCAGGGGCCCACCGCCCCCCAAGGCGGCGGCAAAGGCCACGCGCGAGA
GCGGCGCCAGAGAGAGCGAGAGCGACGGCAAAGAGAGCGAGAGCGGCGGT
GGCACTGCGGTGACGCTCGAGGCTCTGCTGGAGGGCTGCGACATGGGCCG
CTATGCGTTCCTGGAGAAGGGTGTGGAAGAGCTGCGCATCGGCGAGGTGG
GCCTGCTGCTGGAGGAGTACCGCCGCATGGCCCGGCAGAACGAGCTGCTC
AAGAAGGTACTG
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