mRNA_M-pyrifera_M_contig111031.2307.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111031.2307.1
Unique NamemRNA_M-pyrifera_M_contig111031.2307.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: UPI0015D765CF (VCBS repeat-containing protein n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI0015D765CF)

HSP 1 Score: 55.5 bits (132), Expect = 7.530e-7
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1
Query:   19 FVTSVATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDI 246
            + TSVA ADV+QDG++D+VVG  +       + +F  NGDG F     +      +     SV + D+DGDG PDI
Sbjct:  534 YPTSVALADVNQDGHIDMVVGVVNEPGNKEYIAVFPGNGDGTFGTSSKVSTG---SGYATESVVVEDFDGDGVPDI 606          
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A1F3NDS7_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium RBG_13_42_15 TaxID=1797355 RepID=A0A1F3NDS7_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 7.900e-7
Identity = 32/84 (38.10%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   19 FVTSVATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDILTQEWFTT 270
            ++  VA AD D DG +D+++  +     G +  I+ +NG+G F     I ++G    +G  SV  GDYD DGFPDIL   + TT
Sbjct:  253 YMGCVAWADYDNDGYLDILLTGS--SSSGYISKIYHNNGEGNFTEQTSINLTG----VGYSSVAWGDYDNDGFPDILLTGYSTT 330          
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A4Q2WW21_9GAMM (VCBS repeat-containing protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q2WW21_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 3.610e-6
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   19 FVTSVATADVDQDGNMDVVVGYADIEPEGALLY---IFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDI 246
            F T++A+AD+D DG++D+VVG         + Y   + L+ G G++ P  ++P+      +  V+V +GD DGDG PDI
Sbjct:   78 FATTLASADLDDDGDIDLVVG-------NGMSYDVSVLLAEGVGRYAPALNLPLWA--TELSHVAVAVGDLDGDGHPDI 147          
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A2V9KW16_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9KW16_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 4.680e-6
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1
Query:   19 FVTSVATADVDQDGNMDVVVGYADIEPEGAL---LYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDI 246
            + +SVATAD + DG +D+ VGY  + P   L   L + L NGDG F+ P     SGP     +  V   D +GDG  D+
Sbjct:  330 YSSSVATADFNGDGKLDLAVGYYSVPPSHTLEGSLSVMLGNGDGTFQNPSTYTASGP-----VTGVLPMDLNGDGLLDL 403          
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A2V8VE44_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8VE44_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 4.840e-6
Identity = 29/80 (36.25%), Postives = 42/80 (52.50%), Query Frame = 1
Query:    7 VGRGFVTSVATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDI 246
            +  G    +A AD+++DG  D+V G            +F+  GDG F P   +PV+      G  S+T+GD+DGDG PDI
Sbjct:  170 ISPGAPGFLAVADLNRDGRSDLVAG----------SQVFIGRGDGTFLPAFSVPVAS-----GFTSLTVGDFDGDGRPDI 234          
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A2V9Z9N4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9Z9N4_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 8.900e-6
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 1
Query:   28 SVATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDILTQEW 261
            S+A AD ++DGN+D+ VG       G  + +FL N DG F+   + PV   P      SV   D +GDG+PD++T  +
Sbjct:  301 SLAAADFNKDGNLDIAVGVVG----GKSVSVFLGNVDGTFQQAANFPVGNNPW-----SVASADVNGDGYPDLVTANY 369          
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: UPI0019E6A31D (VCBS repeat-containing protein n=1 Tax=Oscillatoriales cyanobacterium LEGE 11467 TaxID=1828826 RepID=UPI0019E6A31D)

HSP 1 Score: 50.4 bits (119), Expect = 4.310e-5
Identity = 32/81 (39.51%), Postives = 41/81 (50.62%), Query Frame = 1
Query:   28 SVATADVDQDGNMDVVVGYADIEPE------GALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDILT 252
            S+  AD+D DG+ D+VV    I+P       G  L I  +NGDG F  P  +     P      SVT GD+DGDG  D+ T
Sbjct:  147 SIVAADIDGDGDGDLVVANPGIDPSFVSPGTGNTLSILRNNGDGTFSVPTTVTTGVGP------SVTAGDFDGDGDIDLAT 221          
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A4R8DWB9_9BACT (VCBS repeat protein n=1 Tax=Dinghuibacter silviterrae TaxID=1539049 RepID=A0A4R8DWB9_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 6.030e-5
Identity = 30/84 (35.71%), Postives = 43/84 (51.19%), Query Frame = 1
Query:   31 VATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDILTQEWFTTYRKL 282
            +A AD++ DG  D+ +   ++   G L  +F  NG G+F   R  PV   P   G   + IGD++GDG PD+ T  W     KL
Sbjct:  632 LAIADLNGDGQKDLGIANTEV---GQLTVLF-GNGKGQFGKARSFPVYSKPHTHG---IAIGDFNGDGHPDLATDSWGLNRLKL 708          
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Match: A0A0L0DDP0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DDP0_THETB)

HSP 1 Score: 50.1 bits (118), Expect = 6.240e-5
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   31 VATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFRPPRHIPVSGPPAPIGMVSVT---IGDYDGDGFPDIL 249
            +A AD D DG++D+VVG A ++P   L+ +F  NG G F   +         P G+VS+    +GD D D +PD++
Sbjct:  712 LAAADFDHDGDLDLVVGSASVDP---LVLLFNDNGRGGFGSQQQF------HPAGLVSINHIAVGDVDADSWPDVV 778          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111031.2307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI0015D765CF7.530e-739.47VCBS repeat-containing protein n=1 Tax=Nevskia sol... [more]
A0A1F3NDS7_9BACT7.900e-738.10Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A4Q2WW21_9GAMM3.610e-636.71VCBS repeat-containing protein n=1 Tax=Xanthomonad... [more]
A0A2V9KW16_9BACT4.680e-639.24Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2V8VE44_9BACT4.840e-636.25Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
A0A2V9Z9N4_9BACT8.900e-637.18Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
UPI0019E6A31D4.310e-539.51VCBS repeat-containing protein n=1 Tax=Oscillatori... [more]
A0A4R8DWB9_9BACT6.030e-535.71VCBS repeat protein n=1 Tax=Dinghuibacter silviter... [more]
A0A0L0DDP0_THETB6.240e-536.84Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111031contigM-pyrifera_M_contig111031:280..561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.0253656-CDS-M-pyrifera_M_contig111031:279..5611622815622.0253656-CDS-M-pyrifera_M_contig111031:279..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111031 280..561 +
1692277491.796632-CDS-M-pyrifera_M_contig111031:279..5611692277491.796632-CDS-M-pyrifera_M_contig111031:279..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111031 280..561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111031.2307.1prot_M-pyrifera_M_contig111031.2307.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111031 280..561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111031.2307.1

>prot_M-pyrifera_M_contig111031.2307.1 ID=prot_M-pyrifera_M_contig111031.2307.1|Name=mRNA_M-pyrifera_M_contig111031.2307.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MDVGRGFVTSVATADVDQDGNMDVVVGYADIEPEGALLYIFLSNGDGKFR
PPRHIPVSGPPAPIGMVSVTIGDYDGDGFPDILTQEWFTTYRKL
back to top

mRNA from alignment at M-pyrifera_M_contig111031:280..561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111031.2307.1 ID=mRNA_M-pyrifera_M_contig111031.2307.1|Name=mRNA_M-pyrifera_M_contig111031.2307.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig111031:280..561+ (Macrocystis pyrifera P11B4 male)
ATGGATGTTGGTCGTGGCTTCGTGACTTCCGTAGCGACAGCTGACGTCGA TCAAGATGGCAATATGGATGTGGTCGTTGGATACGCCGACATAGAGCCAG AGGGCGCGCTTCTGTACATATTCCTCAGCAACGGGGACGGAAAGTTTCGA CCGCCACGCCATATTCCTGTCTCTGGACCTCCGGCACCGATCGGAATGGT CAGTGTTACTATTGGCGACTACGATGGAGATGGCTTCCCAGATATCCTTA CACAAGAGTGGTTCACCACTTACAGAAAGCTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111031:280..561+

>mRNA_M-pyrifera_M_contig111031.2307.1 ID=mRNA_M-pyrifera_M_contig111031.2307.1|Name=mRNA_M-pyrifera_M_contig111031.2307.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig111031:280..561+ (Macrocystis pyrifera P11B4 male)
ATGGATGTTGGTCGTGGCTTCGTGACTTCCGTAGCGACAGCTGACGTCGA
TCAAGATGGCAATATGGATGTGGTCGTTGGATACGCCGACATAGAGCCAG
AGGGCGCGCTTCTGTACATATTCCTCAGCAACGGGGACGGAAAGTTTCGA
CCGCCACGCCATATTCCTGTCTCTGGACCTCCGGCACCGATCGGAATGGT
CAGTGTTACTATTGGCGACTACGATGGAGATGGCTTCCCAGATATCCTTA
CACAAGAGTGGTTCACCACTTACAGAAAGCTTATGGATGTTGGTCGTGGC
TTCGTGACTTCCGTAGCGACAGCTGACGTCGATCAAGATGGCAATATGGA
TGTGGTCGTTGGATACGCCGACATAGAGCCAGAGGGCGCGCTTCTGTACA
TATTCCTCAGCAACGGGGACGGAAAGTTTCGACCGCCACGCCATATTCCT
GTCTCTGGACCTCCGGCACCGATCGGAATGGTCAGTGTTACTATTGGCGA
CTACGATGGAGATGGCTTCCCAGATATCCTTACACAAGAGTGGTTCACCA
CTTACAGAAAGCTT
back to top