mRNA_M-pyrifera_M_contig11098.2302.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11098.2302.1
Unique NamemRNA_M-pyrifera_M_contig11098.2302.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11098.2302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11098contigM-pyrifera_M_contig11098:6531..7969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-12_005080.1
Exons2
Model size762
Cds size762
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.6971061-CDS-M-pyrifera_M_contig11098:6530..66881622815621.6971061-CDS-M-pyrifera_M_contig11098:6530..6688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11098 6531..6688 -
1692277491.605911-CDS-M-pyrifera_M_contig11098:6530..66881692277491.605911-CDS-M-pyrifera_M_contig11098:6530..6688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11098 6531..6688 -
1622815621.7076025-CDS-M-pyrifera_M_contig11098:7365..79691622815621.7076025-CDS-M-pyrifera_M_contig11098:7365..7969Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11098 7366..7969 -
1692277491.6236343-CDS-M-pyrifera_M_contig11098:7365..79691692277491.6236343-CDS-M-pyrifera_M_contig11098:7365..7969Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11098 7366..7969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11098.2302.1prot_M-pyrifera_M_contig11098.2302.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11098 6531..7969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11098.2302.1

>prot_M-pyrifera_M_contig11098.2302.1 ID=prot_M-pyrifera_M_contig11098.2302.1|Name=mRNA_M-pyrifera_M_contig11098.2302.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
APCIRRPLSAQTGNCRFGDRCRNSHDLSASRGDRGGGNAAESSAGWASAG
FGSGGGFGGGGGGDRDSFGGNPSSATSGGDRISFRDSQSGQSHGGRARDG
GGGVSRGGGGSDGGGGFGGGGGFGSAGGFGGGRGFSSGGGFGGSGGAVAF
GPGFSSIGGGGGDGSGGGGGGGGGGGGFGGGNGAGSFPRSSGIRRSGANR
SGQAAPPEVLATWYTDEDKLSAGDLREYEAPKFRVGFIPVVPPPRRFCFP
QEY*
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mRNA from alignment at M-pyrifera_M_contig11098:6531..7969-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11098.2302.1 ID=mRNA_M-pyrifera_M_contig11098.2302.1|Name=mRNA_M-pyrifera_M_contig11098.2302.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1439bp|location=Sequence derived from alignment at M-pyrifera_M_contig11098:6531..7969- (Macrocystis pyrifera P11B4 male)
GCCCCTTGTATTCGCCGACCTCTGTCAGCGCAGACGGGCAACTGCAGGTT
TGGAGATAGGTGCCGCAACAGCCACGATCTAAGCGCCTCCCGAGGCGACA
GGGGCGGCGGCAACGCCGCGGAAAGCTCTGCGGGTTGGGCCAGCGCTGGC
TTCGGAAGCGGGGGCGGTTTCGGCGGGGGCGGTGGGGGTGACCGTGACAG
CTTCGGTGGAAACCCCTCTTCCGCCACGTCGGGCGGGGATAGGATTAGCT
TCAGAGATAGCCAATCCGGGCAGAGCCACGGCGGAAGGGCGCGTGACGGG
GGCGGTGGAGTTTCCAGGGGCGGAGGAGGCAGTGACGGTGGCGGAGGGTT
CGGTGGTGGTGGAGGATTTGGTAGTGCCGGGGGCTTTGGTGGGGGCAGGG
GGTTTAGTAGCGGCGGAGGCTTTGGTGGGTCCGGCGGTGCCGTGGCATTT
GGCCCCGGCTTTAGCTCAATTGGCGGCGGGGGTGGAGATGGGAGCGGAGG
CGGGGGTGGGGGTGGAGGCGGAGGCGGGGGGTTTGGTGGTGGCAACGGGG
CAGGCAGCTTTCCCCGTAGCAGCGGCATCCGTCGGTCGGGGGCGAACCGA
AGCGGTGGGCGGTTCGGGTCGACAGGTGAGTCGGAAGGTTGTCCGCACGG
ATGGTGTTTGCGGCTTGGTGGAGGGGGTCTTGCGTGTTTCTTGCTCCCTC
CAGGCTTCGTGCACGTACCCTTGTTTGTCCGTTTGTGGGGAACGGCGCTT
TTGCATACGGCCTGGTCGGAGTGTTGTTCGACGATGCCCGAGACGTTTGT
CGGGATTTTTGCGTCGCTCGGACGGAGTGGATTGGGAAAAAGCGCTCGCC
GGTTATTTTTTCACGGTGTGGCACAGTGCGCTCCGTGGGAAACAAATCCA
AATTCTTCGTGGCCGGGGCTGCAACGCTCCAGGTCAACTAATCTACGAAC
AGACTACCAGGGCACCAGGCTCCGCCGCCCCTCGCCCCCCGTCCTTTGTG
TTGCCCTTTCCCAGAACTAAAAAATTTCAATACGTGGAATGAAAGTGCAG
CTCCCGACCTGCGCCCACCCGCCCTTGTCAGAGGTGACGAAGTTGTTGTG
GTTCAATCCTTGGTATGCGTAGGACCGTGATGTTTGCGACATTATTATTG
GTGTATTTCTTGTTTCCACAGACTCTACGAGTAGGCAATGACGATGAGGT
AATGTCAGAACAACAACAACAGCAACAACAACGGCTGTGCGTGCGTGTGT
GCGTGTTTGCGTTCCCTGTCCGTGTTTGCAGGCCAGGCGGCGCCCCCAGA
GGTCCTGGCAACCTGGTACACCGACGAGGACAAGCTCAGCGCGGGAGACT
TGAGAGAGTACGAGGCGCCGAAGTTCCGCGTGGGCTTCATTCCGGTAGTC
CCGCCGCCGCGACGGTTCTGCTTTCCGCAGGAGTATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11098:6531..7969-

>mRNA_M-pyrifera_M_contig11098.2302.1 ID=mRNA_M-pyrifera_M_contig11098.2302.1|Name=mRNA_M-pyrifera_M_contig11098.2302.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig11098:6531..7969- (Macrocystis pyrifera P11B4 male)
GCCCCTTGTATTCGCCGACCTCTGTCAGCGCAGACGGGCAACTGCAGGTT
TGGAGATAGGTGCCGCAACAGCCACGATCTAAGCGCCTCCCGAGGCGACA
GGGGCGGCGGCAACGCCGCGGAAAGCTCTGCGGGTTGGGCCAGCGCTGGC
TTCGGAAGCGGGGGCGGTTTCGGCGGGGGCGGTGGGGGTGACCGTGACAG
CTTCGGTGGAAACCCCTCTTCCGCCACGTCGGGCGGGGATAGGATTAGCT
TCAGAGATAGCCAATCCGGGCAGAGCCACGGCGGAAGGGCGCGTGACGGG
GGCGGTGGAGTTTCCAGGGGCGGAGGAGGCAGTGACGGTGGCGGAGGGTT
CGGTGGTGGTGGAGGATTTGGTAGTGCCGGGGGCTTTGGTGGGGGCAGGG
GGTTTAGTAGCGGCGGAGGCTTTGGTGGGTCCGGCGGTGCCGTGGCATTT
GGCCCCGGCTTTAGCTCAATTGGCGGCGGGGGTGGAGATGGGAGCGGAGG
CGGGGGTGGGGGTGGAGGCGGAGGCGGGGGGTTTGGTGGTGGCAACGGGG
CAGGCAGCTTTCCCCGTAGCAGCGGCATCCGTCGGTCGGGGGCGAACCGA
AGCGGCCCCTTGTATTCGCCGACCTCTGTCAGCGCAGACGGGCAACTGCA
GGTTTGGAGATAGGTGCCGCAACAGCCACGATCTAAGCGCCTCCCGAGGC
GACAGGGGCGGCGGCAACGCCGCGGAAAGCTCTGCGGGTTGGGCCAGCGC
TGGCTTCGGAAGCGGGGGCGGTTTCGGCGGGGGCGGTGGGGGTGACCGTG
ACAGCTTCGGTGGAAACCCCTCTTCCGCCACGTCGGGCGGGGATAGGATT
AGCTTCAGAGATAGCCAATCCGGGCAGAGCCACGGCGGAAGGGCGCGTGA
CGGGGGCGGTGGAGTTTCCAGGGGCGGAGGAGGCAGTGACGGTGGCGGAG
GGTTCGGTGGTGGTGGAGGATTTGGTAGTGCCGGGGGCTTTGGTGGGGGC
AGGGGGTTTAGTAGCGGCGGAGGCTTTGGTGGGTCCGGCGGTGCCGTGGC
ATTTGGCCCCGGCTTTAGCTCAATTGGCGGCGGGGGTGGAGATGGGAGCG
GAGGCGGGGGTGGGGGTGGAGGCGGAGGCGGGGGGTTTGGTGGTGGCAAC
GGGGCAGGCAGCTTTCCCCGTAGCAGCGGCATCCGTCGGTCGGGGGCGAA
CCGAAGCGGCCAGGCGGCGCCCCCAGAGGTCCTGGCAACCTGGTACACCG
ACGAGGACAAGCTCAGCGCGGGAGACTTGAGAGAGTACGAGGCGCCGAAG
TTCCGCGTGGGCTTCATTCCGGTAGTCCCGCCGCCGCGACGGTTCTGCTT
TCCGCAGGAGTATTGAGCCAGGCGGCGCCCCCAGAGGTCCTGGCAACCTG
GTACACCGACGAGGACAAGCTCAGCGCGGGAGACTTGAGAGAGTACGAGG
CGCCGAAGTTCCGCGTGGGCTTCATTCCGGTAGTCCCGCCGCCGCGACGG
TTCTGCTTTCCGCAGGAGTATTGA
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