mRNA_M-pyrifera_M_contig110944.2298.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110944.2298.1
Unique NamemRNA_M-pyrifera_M_contig110944.2298.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Match: UPI001F0486A0 (LOW QUALITY PROTEIN: FAD-dependent oxidoreductase domain-containing protein 2-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0486A0)

HSP 1 Score: 100 bits (249), Expect = 1.600e-22
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 LVVSCMALQSVHGMKSFHQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSFFERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLSDVSHVQVNQGVKE 312
            ++++   +  VH     +   +VGAGPGGLQ+A+YLE A+R+Y+V E   +AG+F+ + PR R+LISINKRF      +F +RHDWNSL+SD   +++    KE
Sbjct:    8 VILALSLVSCVHSTAPKYDYCVVGAGPGGLQIAYYLERANRNYIVFERGPSAGTFYRKYPRHRKLISINKRFTGQTNKEFNLRHDWNSLISDDESLRMTLYSKE 111          
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Match: A0A7D9E905_PARCT (FAD-dependent oxidoreductase domain-containing 2-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9E905_PARCT)

HSP 1 Score: 99.0 bits (245), Expect = 5.580e-22
Identity = 44/90 (48.89%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   43 KSFHQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSFFERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLSDVSHVQVNQGVKE 312
             S +   +VGAGPGGLQ+A+YL+ A+R+Y+V E   +AG+F+++ PR R+LISINKRF      +F +RHDWNSL+SD   +++ +  KE
Sbjct:   24 SSEYDYCVVGAGPGGLQIAYYLQKANRNYIVFERGSSAGTFYKKYPRHRKLISINKRFTGKTNKEFNLRHDWNSLISDDETLRMTRYSKE 113          
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Match: V3ZD73_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZD73_LOTGI)

HSP 1 Score: 99.0 bits (245), Expect = 5.600e-22
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   52 HQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSFFERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLS 273
            H   I+GAGPGGLQL +Y+E A RDY++ E +  +GSF+E+ PR R+LISINKR    +  +F MRHDWNSLLS
Sbjct:   34 HDYCIIGAGPGGLQLGYYMEQAKRDYIIFERSNTSGSFYEKYPRHRKLISINKRHTGQSNKEFNMRHDWNSLLS 107          
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Match: UPI00106B084F (FAD-dependent oxidoreductase domain-containing protein 2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B084F)

HSP 1 Score: 98.6 bits (244), Expect = 7.620e-22
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   43 KSFHQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSFFERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLSDVSHVQVNQGVKE 312
             S +   +VGAGPGGLQ+A+YLE A R+Y+V E   +AG+F++  PR R+LISINKRF      +F +RHDWNSL+SD   ++V +  KE
Sbjct:   23 SSDNDYCVVGAGPGGLQIAYYLEKAGRNYIVFERGSSAGTFYKTFPRHRKLISINKRFTGQTNKEFNLRHDWNSLISDDETLRVTRYSKE 112          
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Match: R7V1J5_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V1J5_CAPTE)

HSP 1 Score: 98.2 bits (243), Expect = 9.730e-22
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   10 SCMALQSVHGMKSFHQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSFFERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLSD 276
            S + LQ       +H+ VIVGAGP G+Q A+YLE A RDYV++E     G FFE  PR R LISINKRF      D+ +RHDWNSLLSD
Sbjct:   17 SLVILQFSKVQDKYHEYVIVGAGPAGVQAAYYLEKAGRDYVILEKGDKPGYFFETYPRHRTLISINKRFNYFPEDDYNLRHDWNSLLSD 105          
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Match: A0A8C5QSG7_9ANUR (FAD dependent oxidoreductase domain containing 2 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5QSG7_9ANUR)

HSP 1 Score: 98.2 bits (243), Expect = 1.060e-21
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   52 HQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSFFERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLSDVSHVQVNQ 300
            H   ++GAGPGGLQ+A +LE A RDYVV E +   GSFF R PR R+LISINK+F      +F +RHDWNSLLS + H++ ++
Sbjct:   25 HDYCVLGAGPGGLQIARFLEDAGRDYVVFERSQTPGSFFLRFPRHRKLISINKQFTGSKNSEFNLRHDWNSLLSGIRHLRFSR 107          
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Match: A0A7S0JLT4_CAFRO (Hypothetical protein n=4 Tax=Sar TaxID=2698737 RepID=A0A7S0JLT4_CAFRO)

HSP 1 Score: 98.2 bits (243), Expect = 1.100e-21
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   49 FHQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSFFERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLSDVSH 285
            F +  +VGAGP GLQ+AHYL+SA+R + +I+  G A +FF R PRF  LIS+N+R  E   LDFAMRHDWNSLL D SH
Sbjct:   47 FRRYAVVGAGPAGLQMAHYLQSANRSFALIDGQGPA-AFFGRFPRFGTLISLNRRHPETANLDFAMRHDWNSLLGDASH 124          
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Match: UPI001069BCA8 (FAD-dependent oxidoreductase domain-containing protein 2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069BCA8)

HSP 1 Score: 97.4 bits (241), Expect = 1.970e-21
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   40 MKSFHQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSFFERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLSD 276
            +K+ H+  +VGAGPGGLQ+A++L+ ++RDY+V E    AGSF++  PR R LISINKR       +F MRHDWNSLLSD
Sbjct:   59 IKTHHEYCVVGAGPGGLQIAYFLKRSNRDYIVFERNSEAGSFYKFYPRHRGLISINKRHTGKTNKEFNMRHDWNSLLSD 137          
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Match: C3Z6Y0_BRAFL (Uncharacterized protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z6Y0_BRAFL)

HSP 1 Score: 97.4 bits (241), Expect = 1.980e-21
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   37 GMKSFHQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSFFERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLSDVSHVQVNQGVKE 312
            G   +H  +++GAGP GLQ+  YLE A RDY+++E    AG+F+ + PR R+LISINKR       +F MRHDWNSLLSD   +Q+    KE
Sbjct:   56 GFDVYHDYLVIGAGPSGLQMGFYLERAGRDYLILERGEGAGTFYTQYPRHRKLISINKRNTGKTNKEFNMRHDWNSLLSDDDSLQLRHYSKE 147          
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Match: C3Z4N3_BRAFL (Uncharacterized protein n=3 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z4N3_BRAFL)

HSP 1 Score: 97.1 bits (240), Expect = 2.600e-21
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   49 FHQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSFFERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLSDVSHVQVNQGVKE 312
            +H  +IVGAGP GLQL ++L+ A RDY+++E   +AG+F++  PR R+LISINKR+      ++ MRHDWNSLLSD   +++ Q  +E
Sbjct:   49 YHDYIIVGAGPSGLQLGYFLQRAGRDYLILEKGDSAGTFYKTYPRHRKLISINKRYTGKTNKEYNMRHDWNSLLSDDETLRMTQYSEE 136          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110944.2298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F0486A01.600e-2244.23LOW QUALITY PROTEIN: FAD-dependent oxidoreductase ... [more]
A0A7D9E905_PARCT5.580e-2248.89FAD-dependent oxidoreductase domain-containing 2-l... [more]
V3ZD73_LOTGI5.600e-2258.11Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
UPI00106B084F7.620e-2251.11FAD-dependent oxidoreductase domain-containing pro... [more]
R7V1J5_CAPTE9.730e-2255.06Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A8C5QSG7_9ANUR1.060e-2154.22FAD dependent oxidoreductase domain containing 2 n... [more]
A0A7S0JLT4_CAFRO1.100e-2159.49Hypothetical protein n=4 Tax=Sar TaxID=2698737 Rep... [more]
UPI001069BCA81.970e-2155.70FAD-dependent oxidoreductase domain-containing pro... [more]
C3Z6Y0_BRAFL1.980e-2148.91Uncharacterized protein n=2 Tax=Branchiostoma flor... [more]
C3Z4N3_BRAFL2.600e-2148.86Uncharacterized protein n=3 Tax=Branchiostoma flor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110944contigM-pyrifera_M_contig110944:88..399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score97.4
Seed ortholog evalue3.9e-18
Seed eggNOG ortholog7739.XP_002595564.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGs39RUC@33154,3BIQ5@33208,3CTEJ@33213,487YF@7711,COG2072@1,KOG1399@2759
COG Functional cat.Q
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.5063524-CDS-M-pyrifera_M_contig110944:87..3841622815621.5063524-CDS-M-pyrifera_M_contig110944:87..384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110944 88..384 -
1692277491.5021079-CDS-M-pyrifera_M_contig110944:87..3841692277491.5021079-CDS-M-pyrifera_M_contig110944:87..384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110944 88..384 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.5238166-UTR-M-pyrifera_M_contig110944:384..3991622815621.5238166-UTR-M-pyrifera_M_contig110944:384..399Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110944 385..399 -
1692277491.514704-UTR-M-pyrifera_M_contig110944:384..3991692277491.514704-UTR-M-pyrifera_M_contig110944:384..399Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110944 385..399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110944.2298.1prot_M-pyrifera_M_contig110944.2298.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110944 88..384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110944.2298.1

>prot_M-pyrifera_M_contig110944.2298.1 ID=prot_M-pyrifera_M_contig110944.2298.1|Name=mRNA_M-pyrifera_M_contig110944.2298.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MALQSVHGMKSFHQVVIVGAGPGGLQLAHYLESAHRDYVVIEAAGNAGSF
FERNPRFRELISINKRFLEHNGLDFAMRHDWNSLLSDVSHVQVNQGVKE
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mRNA from alignment at M-pyrifera_M_contig110944:88..399-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110944.2298.1 ID=mRNA_M-pyrifera_M_contig110944.2298.1|Name=mRNA_M-pyrifera_M_contig110944.2298.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig110944:88..399- (Macrocystis pyrifera P11B4 male)
TTAGTGGTGTCGTGCATGGCTTTACAGTCAGTGCATGGGATGAAGAGTTT CCATCAGGTGGTGATCGTCGGTGCTGGGCCTGGTGGGCTCCAATTGGCAC ACTACCTGGAGAGCGCGCATCGAGATTATGTAGTGATTGAAGCAGCAGGA AATGCTGGAAGTTTCTTTGAGCGCAACCCACGGTTTCGCGAGCTCATCTC CATCAACAAGAGATTTTTGGAGCATAATGGGCTGGATTTTGCCATGCGGC ATGATTGGAACTCCCTACTCTCCGATGTGTCTCATGTACAAGTCAACCAA GGTGTAAAAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110944:88..399-

>mRNA_M-pyrifera_M_contig110944.2298.1 ID=mRNA_M-pyrifera_M_contig110944.2298.1|Name=mRNA_M-pyrifera_M_contig110944.2298.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig110944:88..399- (Macrocystis pyrifera P11B4 male)
ATGGCTTTACAGTCAGTGCATGGGATGAAGAGTTTCCATCAGGTGGTGAT
CGTCGGTGCTGGGCCTGGTGGGCTCCAATTGGCACACTACCTGGAGAGCG
CGCATCGAGATTATGTAGTGATTGAAGCAGCAGGAAATGCTGGAAGTTTC
TTTGAGCGCAACCCACGGTTTCGCGAGCTCATCTCCATCAACAAGAGATT
TTTGGAGCATAATGGGCTGGATTTTGCCATGCGGCATGATTGGAACTCCC
TACTCTCCGATGTGTCTCATGTACAAGTCAACCAAGGTGTAAAAGAGATG
GCTTTACAGTCAGTGCATGGGATGAAGAGTTTCCATCAGGTGGTGATCGT
CGGTGCTGGGCCTGGTGGGCTCCAATTGGCACACTACCTGGAGAGCGCGC
ATCGAGATTATGTAGTGATTGAAGCAGCAGGAAATGCTGGAAGTTTCTTT
GAGCGCAACCCACGGTTTCGCGAGCTCATCTCCATCAACAAGAGATTTTT
GGAGCATAATGGGCTGGATTTTGCCATGCGGCATGATTGGAACTCCCTAC
TCTCCGATGTGTCTCATGTACAAGTCAACCAAGGTGTAAAAGAG
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