mRNA_M-pyrifera_M_contig11084.2281.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11084.2281.1
Unique NamemRNA_M-pyrifera_M_contig11084.2281.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Match: D7FTG7_ECTSI (Aluminium resistance family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG7_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 4.130e-54
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSADGPLRPPFNVFAQGCTHWTHWALIIEQALVDMGLVES 276
            LGDRDRL+KFCEAVQLFSPVN+YVRPVPGVTPGYGDEVIFADGTFVDGSTLELS+DGPLRPP+ VFAQGCTHWTHWALIIEQAL+ MGLVE 
Sbjct:  419 LGDRDRLIKFCEAVQLFSPVNAYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSSDGPLRPPYIVFAQGCTHWTHWALIIEQALLAMGLVEE 510
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BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Match: A0A835ZAS5_9STRA (Aluminum resistance protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS5_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.230e-42
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSADGPLRPPFNVFAQGCTHWTHWALIIEQALVDMGLVES 276
            LG R+R V FC+ VQ  SPVN+Y RP PG TPGYGDEVIFADGTF DGSTLELSADGPLR P+ V+AQGCTHWTHWA+I+E+ALV MGL  +
Sbjct:  403 LGTRERTVAFCKVVQKLSPVNAYYRPEPGKTPGYGDEVIFADGTFTDGSTLELSADGPLREPYAVYAQGCTHWTHWAIILEEALVQMGLARA 494
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BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Match: A0A5J4YS39_PORPP (Protein YnbB n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YS39_PORPP)

HSP 1 Score: 147 bits (371), Expect = 5.510e-41
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSADGPLRPPFNVFAQGCTHWTHWALIIEQALVDMGL 267
            LG+RD+L+ FC AVQ  SPV +Y+ P PG TPGYGDEVIFADGTFVDGSTLELSADGPLR P+ V+AQG THWTHWAL++E AL +MGL
Sbjct:  295 LGERDKLIAFCRAVQRQSPVGAYILPEPGQTPGYGDEVIFADGTFVDGSTLELSADGPLREPYVVYAQGGTHWTHWALVLEDALQEMGL 383
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BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Match: A0A5J4YQ84_PORPP (Protein YnbB n=4 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQ84_PORPP)

HSP 1 Score: 147 bits (371), Expect = 3.020e-40
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSADGPLRPPFNVFAQGCTHWTHWALIIEQALVDMGL 267
            LG+RD+L+ FC AVQ  SPV +Y+ P PG TPGYGDEVIFADGTFVDGSTLELSADGPLR P+ V+AQG THWTHWAL++E AL +MGL
Sbjct:  393 LGERDKLIAFCRAVQRQSPVGAYILPEPGQTPGYGDEVIFADGTFVDGSTLELSADGPLREPYVVYAQGGTHWTHWALVLEDALQEMGL 481
[Close]
BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Match: A0A5J4YIB6_PORPP (Protein YnbB n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIB6_PORPP)

HSP 1 Score: 147 bits (371), Expect = 3.160e-40
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSADGPLRPPFNVFAQGCTHWTHWALIIEQALVDMGL 267
            LG+RD+L+ FC AVQ  SPV +Y+ P PG TPGYGDEVIFADGTFVDGSTLELSADGPLR P+ V+AQG THWTHWAL++E AL +MGL
Sbjct:  396 LGERDKLIAFCRAVQRQSPVGAYILPEPGQTPGYGDEVIFADGTFVDGSTLELSADGPLREPYVVYAQGGTHWTHWALVLEDALQEMGL 484
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BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Match: W7U5W1_9STRA (Cys met metabolism pyridoxal-phosphate-dependent enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5W1_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.430e-40
Identity = 62/92 (67.39%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSADGPLRPPFNVFAQGCTHWTHWALIIEQALVDMGLVES 276
            +G RDR+++FC  VQ  SP+ +Y+RP  GV+PGYGDEV+FA GTFVDGSTLELSADGPLR PF VF+QGC HWTHWAL++E+ALV MG  ++
Sbjct:  417 VGSRDRVLQFCHQVQRLSPIGAYIRPTAGVSPGYGDEVVFAVGTFVDGSTLELSADGPLREPFTVFSQGCIHWTHWALVLEEALVQMGFCKN 508
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BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Match: A0A5J4YGH5_PORPP (Protein YnbB n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YGH5_PORPP)

HSP 1 Score: 148 bits (374), Expect = 3.860e-40
Identity = 67/92 (72.83%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSADGPLRPPFNVFAQGCTHWTHWALIIEQALVDMGLVES 276
            LG+RD+L+ FC AVQ  SPV +Y+ P PG TPGYGDEVIFADGTFVDGSTLELSADGPLR P+ V+AQG THWTHWAL++E AL +MGL  S
Sbjct:  405 LGERDKLIAFCRAVQRQSPVGAYILPEPGQTPGYGDEVIFADGTFVDGSTLELSADGPLREPYVVYAQGGTHWTHWALVLEDALQEMGLAYS 496
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BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Match: A0A383VQS3_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VQS3_TETOB)

HSP 1 Score: 135 bits (340), Expect = 3.000e-39
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSADGPLRPPFNVFAQGCTHWTHWALIIEQALVDMG 264
            +G R+ +V FC+ +QL   V SY+RP PGVT GYGDEVIFADGTF+DGST ELSADGP+RPP+ V+ QG THWTHWAL +E ALV + 
Sbjct:    1 MGSREGMVAFCKGIQLACAVGSYIRPEPGVTAGYGDEVIFADGTFIDGSTAELSADGPIRPPYVVYCQGGTHWTHWALAVESALVSLA 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Match: A0A0D2MKH1_9CHLO (Uncharacterized protein ynbB n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MKH1_9CHLO)

HSP 1 Score: 135 bits (341), Expect = 9.140e-39
Identity = 59/87 (67.82%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSADGPLRPPFNVFAQGCTHWTHWALIIEQALVDM 261
            LG R+R+  FC  +Q   PV SY+RPVPGVT GYGDEVIFADGTFVDGST ELSADGPLRPP+ V+ QG THWTHWA+ +E A+ ++
Sbjct:   74 LGSRERMEAFCRGIQRRCPVGSYIRPVPGVTAGYGDEVIFADGTFVDGSTAELSADGPLRPPYVVYCQGGTHWTHWAIALESAVEEL 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Match: A0A7S0J2I6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J2I6_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 1.070e-37
Identity = 55/84 (65.48%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGSTLELSADGPLRPPFNVFAQGCTHWTHWALIIEQAL 252
            LGD D+++  C AVQ FSPV S + PVPG++PGYGDEVIFADGTF+DGSTLELS DGPLR P+  + QG THWTHW +++E+A+
Sbjct:   41 LGDPDKVIALCRAVQRFSPVGSSILPVPGISPGYGDEVIFADGTFIDGSTLELSGDGPLRAPYAAYLQGGTHWTHWKIVLEEAV 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11084.2281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTG7_ECTSI4.130e-5491.30Aluminium resistance family protein n=2 Tax=Ectoca... [more]
A0A835ZAS5_9STRA1.230e-4273.91Aluminum resistance protein n=1 Tax=Tribonema minu... [more]
A0A5J4YS39_PORPP5.510e-4174.16Protein YnbB n=1 Tax=Porphyridium purpureum TaxID=... [more]
A0A5J4YQ84_PORPP3.020e-4074.16Protein YnbB n=4 Tax=Porphyridium purpureum TaxID=... [more]
A0A5J4YIB6_PORPP3.160e-4074.16Protein YnbB n=2 Tax=Porphyridium purpureum TaxID=... [more]
W7U5W1_9STRA3.430e-4067.39Cys met metabolism pyridoxal-phosphate-dependent e... [more]
A0A5J4YGH5_PORPP3.860e-4072.83Protein YnbB n=1 Tax=Porphyridium purpureum TaxID=... [more]
A0A383VQS3_TETOB3.000e-3965.91Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A0D2MKH1_9CHLO9.140e-3967.82Uncharacterized protein ynbB n=1 Tax=Monoraphidium... [more]
A0A7S0J2I6_9EUKA1.070e-3765.48Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11084contigM-pyrifera_M_contig11084:2780..3893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue4.6e-45
Seed eggNOG ortholog2880.D7FTG7
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0016740,GO:0016765,GO:0016829,GO:0016846
EggNOG free text desc.Methionine gamma-lyase
EggNOG OGs2QSV0@2759,COG4100@1
Ec32 ortholog descriptionaluminium resistance family protein
Ec32 orthologEc-21_001310.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.4371562-CDS-M-pyrifera_M_contig11084:2779..29791622815620.4371562-CDS-M-pyrifera_M_contig11084:2779..2979Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11084 2780..2979 -
1692277490.914688-CDS-M-pyrifera_M_contig11084:2779..29791692277490.914688-CDS-M-pyrifera_M_contig11084:2779..2979Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11084 2780..2979 -
1622815620.4501646-CDS-M-pyrifera_M_contig11084:3814..38931622815620.4501646-CDS-M-pyrifera_M_contig11084:3814..3893Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11084 3815..3893 -
1692277490.9289322-CDS-M-pyrifera_M_contig11084:3814..38931692277490.9289322-CDS-M-pyrifera_M_contig11084:3814..3893Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11084 3815..3893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11084.2281.1prot_M-pyrifera_M_contig11084.2281.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11084 2780..3893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11084.2281.1

>prot_M-pyrifera_M_contig11084.2281.1 ID=prot_M-pyrifera_M_contig11084.2281.1|Name=mRNA_M-pyrifera_M_contig11084.2281.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
LGDRDRLVKFCEAVQLFSPVNSYVRPVPGVTPGYGDEVIFADGTFVDGST
LELSADGPLRPPFNVFAQGCTHWTHWALIIEQALVDMGLVES*
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mRNA from alignment at M-pyrifera_M_contig11084:2780..3893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11084.2281.1 ID=mRNA_M-pyrifera_M_contig11084.2281.1|Name=mRNA_M-pyrifera_M_contig11084.2281.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1114bp|location=Sequence derived from alignment at M-pyrifera_M_contig11084:2780..3893- (Macrocystis pyrifera P11B4 male)
CTCGGAGATCGGGACAGGTTGGTGAAGTTCTGCGAAGCAGTGCAGCTTTT
CAGCCCTGTCAACTCCTACGTGCGACCGGGTGAGGATTCCTATCTGCTAT
CTATTTCCTATCCAAGTCGTGAAACATGCGTACTTGTGTATCTACGATGT
TTGGTTTTATTTATGTACTTAAGTACGCGATATTTGTCGTTGCTTGTTAG
TGAGTGGCATCTGGTTTAAACACCGAATATTCCATTTTTAGTTTTTCGGG
GTTGCTTTGTTCTTCCCGTCCAGAACGGTTTGAGCCTGTCTTGTGACCGC
TGACTAGACCCTGGCGATGAGCTAAGGTGTTAAGACCATAATAACAATAG
TACAAATAACAGTAATGGCAACTACAGGAAAGAGGTAAATATTACCGGTA
CCTGGTATGTGTACTACGATCGGGTTTAGGCACTTTGTATCCCTTGCCAG
GTGTAACTATTGAGCAGGTACTCGTTGGTACTCACATCTATTGATTGCTA
TTTATAAGAGACAGAAAATGAAAAGCTTTATTCCTTTCGAGCACGATGGA
GGGCTGAGAGGAGGCTGAGTGCCTCGCAGGAAACCCCTATCTTCCATCTA
AGATACGCCCCCCAAGTCTTACAAATATAATCCCACTACCACCAGTACCA
GGTAATTACCGGCCTTTTTGCATCATTCGAAGCAGTACCATCACATATGA
AAACAACAGTGTATGCCGCTCAAGTCGGCTTTTAAACTTTTTTCTTTTTT
TGTGCCGATCCCCGGACTTCCGGTACTACCAAATTTCTAAAGCACGCACC
GCTCCTGCGGCGTACATTAGTGTCACACCTTTGCTCTTCATCCGTGCTGT
GACCCCCTCTTTCCGCTTTGCAAACGCACGTCTGTCTGTGAATCGACTGT
CGTGCGTCGCCCAGTGCCAGGCGTGACACCCGGCTACGGGGACGAGGTGA
TCTTTGCCGATGGCACCTTCGTCGACGGCAGCACGCTCGAGCTCAGCGCG
GACGGGCCCCTTCGACCTCCGTTCAATGTCTTCGCGCAGGGATGCACCCA
TTGGACCCACTGGGCGTTGATCATAGAACAGGCCTTGGTGGACATGGGTT
TGGTTGAGTCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11084:2780..3893-

>mRNA_M-pyrifera_M_contig11084.2281.1 ID=mRNA_M-pyrifera_M_contig11084.2281.1|Name=mRNA_M-pyrifera_M_contig11084.2281.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig11084:2780..3893- (Macrocystis pyrifera P11B4 male)
CTCGGAGATCGGGACAGGTTGGTGAAGTTCTGCGAAGCAGTGCAGCTTTT
CAGCCCTGTCAACTCCTACGTGCGACCGGCTCGGAGATCGGGACAGGTTG
GTGAAGTTCTGCGAAGCAGTGCAGCTTTTCAGCCCTGTCAACTCCTACGT
GCGACCGGTGCCAGGCGTGACACCCGGCTACGGGGACGAGGTGATCTTTG
CCGATGGCACCTTCGTCGACGGCAGCACGCTCGAGCTCAGCGCGGACGGG
CCCCTTCGACCTCCGTTCAATGTCTTCGCGCAGGGATGCACCCATTGGAC
CCACTGGGCGTTGATCATAGAACAGGCCTTGGTGGACATGGGTTTGGTTG
AGTCATAATGCCAGGCGTGACACCCGGCTACGGGGACGAGGTGATCTTTG
CCGATGGCACCTTCGTCGACGGCAGCACGCTCGAGCTCAGCGCGGACGGG
CCCCTTCGACCTCCGTTCAATGTCTTCGCGCAGGGATGCACCCATTGGAC
CCACTGGGCGTTGATCATAGAACAGGCCTTGGTGGACATGGGTTTGGTTG
AGTCATAA
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