mRNA_M-pyrifera_M_contig110821.2280.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110821.2280.1
Unique NamemRNA_M-pyrifera_M_contig110821.2280.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110821.2280.1 vs. uniprot
Match: A0A2E7K8R2_9PLAN (BON domain-containing protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K8R2_9PLAN)

HSP 1 Score: 129 bits (323), Expect = 4.980e-35
Identity = 104/108 (96.30%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:    1 MLNKFFTSSMITAGFACAVMLQTQICQGQVQTLSTSGGSQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGMGTPQNLNSQNNFIGRSDAAQNAFIGRNNAQ 324
            MLNKFFTSSMITAGFACAVMLQTQICQGQVQTLSTSGGSQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGMGTPQNLNSQNNFIGRSDAAQNA    NNAQ
Sbjct:    1 MLNKFFTSSMITAGFACAVMLQTQICQGQVQTLSTSGGSQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGMGTPQNLNSQNNFIGRSDAAQNAXXXXNNAQ 108
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BLAST of mRNA_M-pyrifera_M_contig110821.2280.1 vs. uniprot
Match: A0A518FWK0_9PLAN (BON domain-containing protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FWK0_9PLAN)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-13
Identity = 61/95 (64.21%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 MLNKFFTSSMITAGFACAVMLQTQICQGQVQTLSTSGGSQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGMGTPQNLNSQNNFIGRSD 285
            M   FFTS +ITAG  C    Q Q C GQVQTLS+SG SQS+  XXXXXXXXXXXXXXXXX            LSSG GTPQNLN+QN+FIGRSD
Sbjct:    1 MSRHFFTSLIITAGCVCVSHFQPQCCLGQVQTLSSSGNSQSTRSXXXXXXXXXXXXXXXXXLAQSPLNNTQTPLSSGTGTPQNLNAQNSFIGRSD 95
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110821.2280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E7K8R2_9PLAN4.980e-3596.30BON domain-containing protein n=8 Tax=Gimesia TaxI... [more]
A0A518FWK0_9PLAN1.300e-1364.21BON domain-containing protein n=3 Tax=Gimesia pana... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110821contigM-pyrifera_M_contig110821:1..324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.394052-CDS-M-pyrifera_M_contig110821:0..3241622815620.394052-CDS-M-pyrifera_M_contig110821:0..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110821 1..324 -
1692277490.9042542-CDS-M-pyrifera_M_contig110821:0..3241692277490.9042542-CDS-M-pyrifera_M_contig110821:0..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110821 1..324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110821.2280.1prot_M-pyrifera_M_contig110821.2280.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110821 1..324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110821.2280.1

>prot_M-pyrifera_M_contig110821.2280.1 ID=prot_M-pyrifera_M_contig110821.2280.1|Name=mRNA_M-pyrifera_M_contig110821.2280.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MLNKFFTSSMITAGFACAVMLQTQICQGQVQTLSTSGGSQSSRGGNQSLG
GSTSGLGGSSGTAQTPLNNLQTPLSSGMGTPQNLNSQNNFIGRSDAAQNA
FIGRNNAQ
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mRNA from alignment at M-pyrifera_M_contig110821:1..324-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110821.2280.1 ID=mRNA_M-pyrifera_M_contig110821.2280.1|Name=mRNA_M-pyrifera_M_contig110821.2280.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig110821:1..324- (Macrocystis pyrifera P11B4 male)
ATGTTGAATAAATTCTTCACAAGTTCAATGATCACAGCGGGTTTTGCGTG
TGCGGTCATGCTCCAGACACAAATCTGTCAGGGGCAGGTGCAGACGCTTT
CTACCAGTGGTGGCTCACAATCATCACGGGGGGGGAATCAATCTTTGGGA
GGATCCACATCCGGGTTGGGGGGAAGTTCAGGGACAGCACAGACTCCTCT
GAACAATCTGCAGACACCGCTCTCATCTGGAATGGGGACGCCACAGAATC
TGAACTCTCAGAACAATTTTATTGGCCGCTCTGATGCTGCGCAGAATGCA
TTTATTGGTCGCAATAATGCCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110821:1..324-

>mRNA_M-pyrifera_M_contig110821.2280.1 ID=mRNA_M-pyrifera_M_contig110821.2280.1|Name=mRNA_M-pyrifera_M_contig110821.2280.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig110821:1..324- (Macrocystis pyrifera P11B4 male)
ATGTTGAATAAATTCTTCACAAGTTCAATGATCACAGCGGGTTTTGCGTG
TGCGGTCATGCTCCAGACACAAATCTGTCAGGGGCAGGTGCAGACGCTTT
CTACCAGTGGTGGCTCACAATCATCACGGGGGGGGAATCAATCTTTGGGA
GGATCCACATCCGGGTTGGGGGGAAGTTCAGGGACAGCACAGACTCCTCT
GAACAATCTGCAGACACCGCTCTCATCTGGAATGGGGACGCCACAGAATC
TGAACTCTCAGAACAATTTTATTGGCCGCTCTGATGCTGCGCAGAATGCA
TTTATTGGTCGCAATAATGCCCAGATGTTGAATAAATTCTTCACAAGTTC
AATGATCACAGCGGGTTTTGCGTGTGCGGTCATGCTCCAGACACAAATCT
GTCAGGGGCAGGTGCAGACGCTTTCTACCAGTGGTGGCTCACAATCATCA
CGGGGGGGGAATCAATCTTTGGGAGGATCCACATCCGGGTTGGGGGGAAG
TTCAGGGACAGCACAGACTCCTCTGAACAATCTGCAGACACCGCTCTCAT
CTGGAATGGGGACGCCACAGAATCTGAACTCTCAGAACAATTTTATTGGC
CGCTCTGATGCTGCGCAGAATGCATTTATTGGTCGCAATAATGCCCAG
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