mRNA_M-pyrifera_M_contig110767.2261.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110767.2261.1
Unique NamemRNA_M-pyrifera_M_contig110767.2261.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Match: A0A4Q2DDZ2_9AGAR (Uncharacterized protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DDZ2_9AGAR)

HSP 1 Score: 77.4 bits (189), Expect = 4.620e-16
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 SGQNFRGRPGASATNRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQTLG 159
            SGQN++ +      N V +KVGMVGDSQ+GKTSLMVKYV+G+FDEDYIQTLG
Sbjct:   16 SGQNYQPQENGDEKNSVVIKVGMVGDSQIGKTSLMVKYVEGSFDEDYIQTLG 67
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BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Match: A0A0C2WPS7_9AGAM (Uncharacterized protein n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2WPS7_9AGAM)

HSP 1 Score: 74.7 bits (182), Expect = 7.580e-15
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   46 NRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQTLGPPSLSL 177
            N V VKVGMVGDSQ+GKTSLMVKYV+G+FDEDYIQTLG P L L
Sbjct:   22 NSVVVKVGMVGDSQIGKTSLMVKYVEGSFDEDYIQTLGSPLLLL 65
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BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Match: J0WW14_AURST (Small monomeric GTPase n=2 Tax=Auriculariales TaxID=5226 RepID=J0WW14_AURST)

HSP 1 Score: 73.6 bits (179), Expect = 1.510e-14
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    4 SGQNFRGRPGASATNRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQTLG 159
            SGQ     P     N V +KVGMVGDSQ+GKTSLMVKYV+G+FDEDYIQTLG
Sbjct:   12 SGQGSLPEPTGDDKNSVVIKVGMVGDSQIGKTSLMVKYVEGSFDEDYIQTLG 63
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BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Match: A0A662X1M3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1M3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.940e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   34 ASATNRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQTLG 159
            AS+ N V VKVGMVGD+QVGKTSLMVKYV+G FDEDYI TLG
Sbjct:   42 ASSRNNVVVKVGMVGDAQVGKTSLMVKYVEGKFDEDYIHTLG 83
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BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Match: A0A662Y344_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y344_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.230e-14
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   31 GASATNRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQTLGPPSL 171
            GAS+ N V VKVGMVGD+QVGKTSLMVKYV+G FDEDYI TLG P +
Sbjct:  443 GASSRNNVIVKVGMVGDAQVGKTSLMVKYVEGKFDEDYIHTLGTPRI 489
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BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Match: A0A075B1Y5_ROZAC (Septum-promoting GTP-binding protein 1 n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B1Y5_ROZAC)

HSP 1 Score: 72.8 bits (177), Expect = 2.400e-14
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    4 SGQNFRGRPGASATNRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQTLG 159
            S Q ++G  G +  N V VKVGMVGDSQ+GKTSLMVKYV+G FDEDYIQTLG
Sbjct:    3 SNQEYKGA-GEAKKNTVFVKVGMVGDSQIGKTSLMVKYVEGTFDEDYIQTLG 53
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BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Match: A0A2P6NHR5_9EUKA (Spg1, Ras superfamily GTPase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NHR5_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 2.640e-14
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   22 GRPGASATNRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQTLG 159
            G+ G    N V VKVGMVGDSQ+GKTSLMVKYV+G FDEDYIQTLG
Sbjct:   31 GKAGEGKKNSVVVKVGMVGDSQIGKTSLMVKYVEGTFDEDYIQTLG 76
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BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Match: A0A7S3DCN0_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DCN0_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 3.470e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   31 GASATNRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQTLG 159
            G S   +V VKVG+VGDSQ+GKTSLMVKYV+GNFDEDYIQTLG
Sbjct:    5 GESQKEQVVVKVGVVGDSQIGKTSLMVKYVEGNFDEDYIQTLG 47
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BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Match: A0A8H4V410_9HYPO (Uncharacterized protein (Fragment) n=1 Tax=Fusarium sp. NRRL 66182 TaxID=2692428 RepID=A0A8H4V410_9HYPO)

HSP 1 Score: 72.0 bits (175), Expect = 5.330e-14
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   22 GRPGASATNRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQTLG 159
            G P ++  N V +KVGMVGD+Q+GKTSLMVKYV+G++DEDYIQTLG
Sbjct:   93 GEPSSNGRNHVVIKVGMVGDAQIGKTSLMVKYVEGSWDEDYIQTLG 138
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BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Match: A0A7S4IRV2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IRV2_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 5.690e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:   34 ASATNRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQTLG 159
            +  + +VTVKVGMVGDSQVGK+SLMVKYVDG+FDEDYIQTLG
Sbjct:   22 SKGSKQVTVKVGMVGDSQVGKSSLMVKYVDGSFDEDYIQTLG 63
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110767.2261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Q2DDZ2_9AGAR4.620e-1669.23Uncharacterized protein n=1 Tax=Candolleomyces abe... [more]
A0A0C2WPS7_9AGAM7.580e-1581.82Uncharacterized protein n=1 Tax=Serendipita vermif... [more]
J0WW14_AURST1.510e-1469.23Small monomeric GTPase n=2 Tax=Auriculariales TaxI... [more]
A0A662X1M3_9STRA1.940e-1480.95Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662Y344_9STRA2.230e-1476.60Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A075B1Y5_ROZAC2.400e-1471.15Septum-promoting GTP-binding protein 1 n=1 Tax=Roz... [more]
A0A2P6NHR5_9EUKA2.640e-1476.09Spg1, Ras superfamily GTPase n=1 Tax=Planoprotoste... [more]
A0A7S3DCN0_9EUKA3.470e-1479.07Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A8H4V410_9HYPO5.330e-1469.57Uncharacterized protein (Fragment) n=1 Tax=Fusariu... [more]
A0A7S4IRV2_9EUKA5.690e-1480.95Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110767contigM-pyrifera_M_contig110767:40..216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.6
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog160860.XP_007354239.1
Preferred nameTEM1
KEGG koko:K06682
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000075,GO:0000166,GO:0000226,GO:0000278,GO:0000280,GO:0000910,GO:0001100,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005816,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007093,GO:0007096,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007346,GO:0008104,GO:0008150,GO:0009987,GO:0010458,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0010973,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022402,GO:0023052,GO:0030071,GO:0031028,GO:0031577,GO:0031578,GO:0031991,GO:0032465,GO:0032467,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032954,GO:0032955,GO:0032956,GO:0032970,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034613,GO:0035556,GO:0035639,GO:0036094,GO:0040001,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044732,GO:0044770,GO:0044772,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045930,GO:0045931,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051293,GO:0051301,GO:0051302,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060341,GO:0065007,GO:0070727,GO:0071174,GO:0071840,GO:0090068,GO:0097159,GO:0097367,GO:0110020,GO:0140014,GO:1901265,GO:1901363,GO:1901891,GO:1901893,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902363,GO:1902412,GO:1902542,GO:1902850,GO:1903047,GO:1903436,GO:1903438,GO:1903490,GO:1903827,GO:1905818,GO:1905819,GO:2000816,GO:2001251
EggNOG free text desc.Gtr1/RagA G protein conserved region
EggNOG OGs226CR@155619,38E17@33154,3H157@355688,3NYD0@4751,3UZYP@5204,COG1100@1,KOG1673@2759
COG Functional cat.U
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.5792816-CDS-M-pyrifera_M_contig110767:39..2161622815619.5792816-CDS-M-pyrifera_M_contig110767:39..216Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110767 40..216 -
1692277490.5610023-CDS-M-pyrifera_M_contig110767:39..2161692277490.5610023-CDS-M-pyrifera_M_contig110767:39..216Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110767 40..216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110767.2261.1prot_M-pyrifera_M_contig110767.2261.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110767 40..216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110767.2261.1

>prot_M-pyrifera_M_contig110767.2261.1 ID=prot_M-pyrifera_M_contig110767.2261.1|Name=mRNA_M-pyrifera_M_contig110767.2261.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MSGQNFRGRPGASATNRVTVKVGMVGDSQVGKTSLMVKYVDGNFDEDYIQ
TLGPPSLSL
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mRNA from alignment at M-pyrifera_M_contig110767:40..216-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110767.2261.1 ID=mRNA_M-pyrifera_M_contig110767.2261.1|Name=mRNA_M-pyrifera_M_contig110767.2261.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig110767:40..216- (Macrocystis pyrifera P11B4 male)
ATGTCTGGGCAGAACTTTCGGGGCAGGCCAGGCGCCAGCGCCACGAACCG
CGTGACGGTCAAGGTGGGAATGGTGGGCGACTCTCAAGTCGGTAAGACGA
GCTTGATGGTGAAGTACGTGGACGGAAACTTCGACGAAGACTACATCCAG
ACGCTCGGTCCGCCCTCCCTCTCCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110767:40..216-

>mRNA_M-pyrifera_M_contig110767.2261.1 ID=mRNA_M-pyrifera_M_contig110767.2261.1|Name=mRNA_M-pyrifera_M_contig110767.2261.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig110767:40..216- (Macrocystis pyrifera P11B4 male)
ATGTCTGGGCAGAACTTTCGGGGCAGGCCAGGCGCCAGCGCCACGAACCG
CGTGACGGTCAAGGTGGGAATGGTGGGCGACTCTCAAGTCGGTAAGACGA
GCTTGATGGTGAAGTACGTGGACGGAAACTTCGACGAAGACTACATCCAG
ACGCTCGGTCCGCCCTCCCTCTCCCTCATGTCTGGGCAGAACTTTCGGGG
CAGGCCAGGCGCCAGCGCCACGAACCGCGTGACGGTCAAGGTGGGAATGG
TGGGCGACTCTCAAGTCGGTAAGACGAGCTTGATGGTGAAGTACGTGGAC
GGAAACTTCGACGAAGACTACATCCAGACGCTCGGTCCGCCCTCCCTCTC
CCTC
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