mRNA_M-pyrifera_M_contig110758.2258.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110758.2258.1
Unique NamemRNA_M-pyrifera_M_contig110758.2258.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Match: A0A7S4MSG1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MSG1_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 2.490e-17
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   10 DHLLQHSYSFWFNRRVQG--ARTQENYEKNIKRVATFSSVELFWAYYNHMVHP 162
            +H ++H+YSFW+NRR  G  ARTQENYEKNI+++ TF +VE FW+YYNHM+ P
Sbjct:   28 EHPIEHTYSFWYNRRPTGQEARTQENYEKNIRKIGTFCTVEQFWSYYNHMIRP 80
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BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Match: A0A7S4NXA4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NXA4_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 7.940e-16
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    7 DDHLLQHSYSFWFNRRVQGARTQENYEKNIKRVATFSSVELFWAYYNHMVHP 162
            + H L+  ++FW+N+R+ GART ENYEK+IK + TF SVE+FWA+YNHM+ P
Sbjct:   21 EKHPLKDGWTFWYNQRMSGARTPENYEKHIKNIGTFRSVEMFWAFYNHMIRP 72
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BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Match: A0A6B2LJ37_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LJ37_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 5.180e-14
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    4 PDDHLLQHSYSFWFNRRVQGARTQENYEKNIKRVATFSSVELFWAYYNHMVHP 162
            P  H L+  YSFWF +R QG R+QENYEK+IK++ TF +VE FWAYYNH++ P
Sbjct:    9 PKYHPLKQPYSFWFMKR-QGQRSQENYEKSIKQIGTFGTVEDFWAYYNHLLRP 60
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BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Match: A0A8B8VVL1_BALMU (eukaryotic translation initiation factor 4E type 2-like n=2 Tax=Balaenoptera musculus TaxID=9771 RepID=A0A8B8VVL1_BALMU)

HSP 1 Score: 70.5 bits (171), Expect = 2.460e-13
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 GPDDHLLQHSYSFWFNRRVQGARTQ-ENYEKNIKRVATFSSVELFWAYYNHMVHP 162
            GP +H LQ++Y+FW++RR  G  T  ++YE+NIK++  F+SVE FW +Y+HMVHP
Sbjct:   50 GPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGFFASVEQFWRFYSHMVHP 104
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BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Match: A0A2K6EHP3_PROCO (Uncharacterized protein n=3 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6EHP3_PROCO)

HSP 1 Score: 70.1 bits (170), Expect = 2.950e-13
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 GPDDHLLQHSYSFWFNRRVQGARTQ-ENYEKNIKRVATFSSVELFWAYYNHMVHP 162
            GP +H L ++Y+FW++RR  G  T  ++YE+NI+++ TF+SVE FW YY+HMVHP
Sbjct:   50 GPAEHPLWYNYTFWYSRRTPGHPTSSQSYEQNIEQIGTFASVEQFWRYYSHMVHP 104
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BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Match: A0A2P6NRV1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NRV1_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 4.310e-13
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   10 DHLLQHSYSFWFNRRVQGARTQENYEKNIKRVATFSSVELFWAYYNHMVHP 162
            +H L H++SFWF R+ QG+R  E YEKNIK++ TF++VE FW YY HM  P
Sbjct:   39 EHPLFHTWSFWFLRKSQGSRAMETYEKNIKQIGTFNTVEGFWGYYTHMQRP 89
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BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Match: T1J4S8_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J4S8_STRMM)

HSP 1 Score: 67.8 bits (164), Expect = 2.420e-12
Identity = 27/55 (49.09%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 GPDDHLLQHSYSFWFNRRVQGARTQENYEKNIKRVATFSSVELFWAYYNHMVHPA 165
            G  +H LQ++YS W+++R  G +   +Y++N+KRVATF+SVE FWAYY+H++ P+
Sbjct:   45 GIGEHRLQYAYSLWYSKRTPGTKAM-SYDQNLKRVATFASVEQFWAYYSHLIRPS 98
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BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Match: A0A3Q7TY49_VULVU (eukaryotic translation initiation factor 4E type 2-like isoform X1 n=1 Tax=Vulpes vulpes TaxID=9627 RepID=A0A3Q7TY49_VULVU)

HSP 1 Score: 62.4 bits (150), Expect = 1.740e-10
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 GPDDHLLQHSYSFWFNRRVQGARTQENYEKNIKRVATFSSVELFWAYYNHMVHP 162
            GP +H LQ++Y+FW++RR  G  T     ++ +++ TF+SVE FW +Y+HMVHP
Sbjct:   50 GPAEHPLQYNYTFWYSRRTPGCPTSS---QSFEQIGTFASVEQFWRFYSHMVHP 100
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BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Match: UPI000D733B32 (eukaryotic translation initiation factor 4E type 2-like isoform X1 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D733B32)

HSP 1 Score: 62.4 bits (150), Expect = 2.210e-10
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 GPDDHLLQHSYSFWFNRRVQGARTQENYEKNIKRVATFSSVELFWAYYNHMVHPA 165
            GP +H LQ +YS WF++R  G +T   + +++K VA+F+SVE FWA Y+H+  P+
Sbjct:   32 GPGEHPLQFNYSIWFSKRTPGNKTSTTFGQHLKFVASFASVEQFWAVYSHLARPS 86
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BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Match: A0A8I3PX40_CANLF (Uncharacterized protein n=2 Tax=Canidae TaxID=9608 RepID=A0A8I3PX40_CANLF)

HSP 1 Score: 62.8 bits (151), Expect = 2.550e-10
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 GPDDHLLQHSYSFWFNRRVQGARTQ-ENYEKNIKRVATFSSVELFWAYYNHMVHP 162
            GP +H LQ++Y+FW++R      T  ++Y++NIK +  F+SVE FW +Y+HMVHP
Sbjct:   58 GPAEHTLQYNYTFWYSRIAPRHPTSSQSYKQNIKLIGAFASVEQFWRFYSHMVHP 112
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110758.2258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MSG1_9EUKA2.490e-1762.26Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4NXA4_9EUKA7.940e-1657.69Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A6B2LJ37_9EUKA5.180e-1460.38Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A8B8VVL1_BALMU2.460e-1352.73eukaryotic translation initiation factor 4E type 2... [more]
A0A2K6EHP3_PROCO2.950e-1352.73Uncharacterized protein n=3 Tax=Propithecus coquer... [more]
A0A2P6NRV1_9EUKA4.310e-1356.86Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
T1J4S8_STRMM2.420e-1249.09Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
A0A3Q7TY49_VULVU1.740e-1046.30eukaryotic translation initiation factor 4E type 2... [more]
UPI000D733B322.210e-1045.45eukaryotic translation initiation factor 4E type 2... [more]
A0A8I3PX40_CANLF2.550e-1047.27Uncharacterized protein n=2 Tax=Canidae TaxID=9608... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110758contigM-pyrifera_M_contig110758:377..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score72.0
Seed ortholog evalue9.7e-11
Seed eggNOG ortholog9315.ENSMEUP00000014166
Preferred nameEIF4E2
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000339,GO:0001701,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0019538,GO:0019899,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031625,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0043009,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112,GO:2000113
EggNOG free text desc.Eukaryotic translation initiation factor 4E family member 2
EggNOG OGs38GD4@33154,3BGXI@33208,3CYQH@33213,3J7RV@40674,4810N@7711,496DP@7742,4K3I5@9263,COG5053@1,KOG1669@2759
COG Functional cat.J
Best tax levelMetatheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.4562395-CDS-M-pyrifera_M_contig110758:376..5411622815619.4562395-CDS-M-pyrifera_M_contig110758:376..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110758 377..541 +
1692277490.5289402-CDS-M-pyrifera_M_contig110758:376..5411692277490.5289402-CDS-M-pyrifera_M_contig110758:376..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110758 377..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110758.2258.1prot_M-pyrifera_M_contig110758.2258.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110758 377..541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110758.2258.1

>prot_M-pyrifera_M_contig110758.2258.1 ID=prot_M-pyrifera_M_contig110758.2258.1|Name=mRNA_M-pyrifera_M_contig110758.2258.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
GPDDHLLQHSYSFWFNRRVQGARTQENYEKNIKRVATFSSVELFWAYYNH
MVHPA
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mRNA from alignment at M-pyrifera_M_contig110758:377..541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110758.2258.1 ID=mRNA_M-pyrifera_M_contig110758.2258.1|Name=mRNA_M-pyrifera_M_contig110758.2258.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig110758:377..541+ (Macrocystis pyrifera P11B4 male)
GGGCCAGACGACCACCTCCTGCAGCACAGCTACAGCTTCTGGTTCAACAG
GCGCGTACAGGGCGCGAGGACTCAGGAAAACTACGAGAAGAACATCAAGC
GGGTGGCCACATTCTCCTCTGTGGAGCTCTTCTGGGCCTACTACAACCAC
ATGGTACACCCCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110758:377..541+

>mRNA_M-pyrifera_M_contig110758.2258.1 ID=mRNA_M-pyrifera_M_contig110758.2258.1|Name=mRNA_M-pyrifera_M_contig110758.2258.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig110758:377..541+ (Macrocystis pyrifera P11B4 male)
GGGCCAGACGACCACCTCCTGCAGCACAGCTACAGCTTCTGGTTCAACAG
GCGCGTACAGGGCGCGAGGACTCAGGAAAACTACGAGAAGAACATCAAGC
GGGTGGCCACATTCTCCTCTGTGGAGCTCTTCTGGGCCTACTACAACCAC
ATGGTACACCCCGCGGGGCCAGACGACCACCTCCTGCAGCACAGCTACAG
CTTCTGGTTCAACAGGCGCGTACAGGGCGCGAGGACTCAGGAAAACTACG
AGAAGAACATCAAGCGGGTGGCCACATTCTCCTCTGTGGAGCTCTTCTGG
GCCTACTACAACCACATGGTACACCCCGCG
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