mRNA_M-pyrifera_M_contig110754.2255.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110754.2255.1
Unique NamemRNA_M-pyrifera_M_contig110754.2255.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Match: A0A3D5RVR9_9BACT (Uncharacterized protein n=2 Tax=Cytophagales TaxID=768507 RepID=A0A3D5RVR9_9BACT)

HSP 1 Score: 156 bits (395), Expect = 2.620e-45
Identity = 71/128 (55.47%), Postives = 95/128 (74.22%), Query Frame = 1
Query:    1 HFISQINDIEYSDIAPIVDVEAGSISGSISKQKMHQDILSFIKQIELSLNRTPIIYTNTAFANEYLNNPDFANYELWLAEYT-KNQPKVPDTWKDKGYLIWQNSQSYNDFTTTTDFDVFRGRLNELLR 381
            HF+S + D+E SDIAP+VDVE G +S +  K  M +D+ +F+ ++E  L R PIIY + +FAN YLN+P F+NYELWLAEYT ++QP VPD WK KGYLIWQ S+SY  ++  +D D F GRLN+L+R
Sbjct:  128 HFLSALVDLENSDIAPVVDVEEGGLSTTPDKSTMQKDLKAFLVKLETQLRRKPIIYCDPSFANTYLNDPSFSNYELWLAEYTNRDQPTVPDVWKSKGYLIWQKSESYTVYSDKSDLDEFNGRLNDLIR 255          
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Match: A0A2A4YU67_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2A4YU67_9FLAO)

HSP 1 Score: 146 bits (369), Expect = 2.610e-41
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 HFISQINDIEYSDIAPIVDVEAGSISGSISKQKMHQDILSFIKQIELSLNRTPIIYTNTAFANEYLNNPDFANYELWLAEYTKN--QPKVPDTWKDKGYLIWQNSQSYNDFTTTTDFDVFRGRLNELLR 381
            HF + I+DI+  DIAPI+D+E GS+S  +S ++M +DIL F+K++E   NR PI+YT+ AFA EYL + +FANY+LWLAEYT +   P VPD WK+KGY IWQ S SY+  T T D D + G L+E+++
Sbjct:  134 HFCTTISDIDAKDIAPILDIEQGSMSKDVSGEQMAEDILVFLKEVEKKTNRKPILYTDYAFAQEYLKSYEFANYDLWLAEYTTDGDTPMVPDVWKEKGYKIWQKSASYHIDTKTVDLDQYSGPLSEIVK 262          
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Match: A0A269PIK7_9GAMM (Uncharacterized protein n=1 Tax=Pseudoalteromonas sp. NBT06-2 TaxID=2025950 RepID=A0A269PIK7_9GAMM)

HSP 1 Score: 131 bits (330), Expect = 3.340e-35
Identity = 59/126 (46.83%), Postives = 85/126 (67.46%), Query Frame = 1
Query:    1 HFISQINDIEYSDIAPIVDVEAGSISGSISKQKMHQDILSFIKQIELSLNRTPIIYTNTAFANEYLNNPDFANYELWLAEYTKNQ-PKVPDTWKDKGYLIWQNSQSYNDFTTTTDFDVFRGRLNEL 375
            HF++ +     +DI PIVD+EA  +S     + + QD+LSF+  +E+   R P+IY+N AFA ++LNN +F+ Y LW+A+YTK + P VP+TWK KG LIWQ+S SY   +   DFDVF G+L+ L
Sbjct:  155 HFVNTVGKWHANDIPPIVDIEAAGVSSDTQIKNLQQDLLSFLNYVEVHTKRLPMIYSNYAFAQQWLNNTEFSRYPLWIADYTKAKTPNVPNTWKQKGALIWQHSDSYQLDSDDVDFDVFHGKLSNL 280          
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Match: UPI001AD6EB08 (hypothetical protein n=1 Tax=Pseudoalteromonas xiamenensis TaxID=882626 RepID=UPI001AD6EB08)

HSP 1 Score: 128 bits (322), Expect = 2.330e-34
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    1 HFISQINDIEYSDIAPIVDVEAGSISGSISKQKMHQDILSFIKQIELSLNRTPIIYTNTAFANEYLNNPDFANYELWLAEYTK-NQPKVPDTWKDKGYLIWQNSQSYNDFTTTTDFDVFRGRLNEL 375
            HFI+ +     SDI PIVDVE  S+S   S  ++H+D+LSF+  +E +  R P+IY+NT FA  +LNN +F  Y LWLA+YTK  +P VP+ W+ +G  IWQ S +Y   +T  D+DVFRG L++L
Sbjct:  117 HFINTVGQWTDSDITPIVDVEQYSVSHDKSVSQLHEDLLSFLDYVESNTGRLPMIYSNTKFAQMWLNNSEFGRYPLWLADYTKAKKPVVPEVWQHQGLFIWQRSDTYKLESTEVDYDVFRGELSQL 242          
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Match: A0A5N5ZFP7_9FLAO (Uncharacterized protein n=1 Tax=Kordia sp. TARA_039_SRF TaxID=2530203 RepID=A0A5N5ZFP7_9FLAO)

HSP 1 Score: 124 bits (311), Expect = 1.260e-32
Identity = 54/126 (42.86%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    1 HFISQINDIEYSDIAPIVDVEAGSISGSISKQKMHQDILSFIKQIELSLNRTPIIYTNTAFANEYLNNPDFANYELWLAEY-TKNQPKVPDTWKDKGYLIWQNSQSYNDFTTTTDFDVFRGRLNEL 375
            HF++ +  +E +DI PI+D+E   I  S + + + + +LS +++I+ ++N TPIIY+NT+FAN+YLNN  FANY LW+A+Y  K  P +P  WK KG+  WQ + +Y+    T D DVF G + +L
Sbjct:  126 HFLNTLKGLEPTDIPPIIDIEESGIDKSYAVEDVQESVLSLLQEIDKAINATPIIYSNTSFANKYLNNEAFANYPLWVADYDAKANPDIPSAWKTKGFTFWQKTDNYDLNGFTDDADVFNGDMEQL 251          
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Match: UPI0003FC7CBA (hypothetical protein n=2 Tax=Tenacibaculum ovolyticum TaxID=104270 RepID=UPI0003FC7CBA)

HSP 1 Score: 123 bits (309), Expect = 1.660e-32
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 HFISQINDIEYSDIAPIVDVEAGSISGSISKQKMHQDILSFIKQIELSLNRTPIIYTNTAFANEYLNNPDFANYELWLAEYT-KNQPKVPDTWKDKGYLIWQNSQSYNDFTTTTDFDVFRGRLNE 372
            HF + I  I+ SDI PI+D EAG I  S S +++   +  FI Q+E +L+R PIIYT+    N+YLN+  FANY+LW+A Y  +  P +P+TWK+KG+LIWQ S SY     T D D+F G L E
Sbjct:  108 HFTNTIGSIKKSDIPPIIDFEAGGIDVSQSVEEVQHTLKIFINQLEKTLDRKPIIYTSVFTGNKYLNDSFFANYKLWIANYNGEKSPDLPNTWKEKGWLIWQRSDSYKLDGVTDDLDMFNGSLEE 232          
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Match: A0A238VBT0_9FLAO (Glycosyl hydrolases family 25 n=1 Tax=Lutibacter flavus TaxID=691689 RepID=A0A238VBT0_9FLAO)

HSP 1 Score: 124 bits (312), Expect = 8.100e-32
Identity = 58/130 (44.62%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 HFISQINDIEYSDIAPIVDVEAGSISGS--ISKQKMHQDILSFIKQIELSLNRTPIIYTNTAFANEYLNNPDFANYELWLAEYT-KNQPKVPDTWKDKGYLIWQNSQSYNDFTTTTDFDVFRGRLNELLR 381
            H++S +     +DIAPI+D+E GS+S +  I+ +K+ +D+L F++ IE    R P++YTN  FAN YL +  F+ Y LWL EYT KNQP +P TW+DKG+ IWQ S++Y+  +T  D D+F G + +L +
Sbjct:  238 HYLSVVGVWRTNDIAPIIDIEDGSLSTTKQINIEKLQKDVLKFLEHIEKETKRIPMLYTNLYFANMYLKDKAFSKYPLWLGEYTSKNQPILPKTWQDKGFKIWQKSENYHFKSTKEDLDIFYGDIKDLYK 367          
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Match: A0A2T6BSB4_9FLAO (Lysozyme n=1 Tax=Kordia periserrulae TaxID=701523 RepID=A0A2T6BSB4_9FLAO)

HSP 1 Score: 121 bits (303), Expect = 1.970e-31
Identity = 54/126 (42.86%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 HFISQINDIEYSDIAPIVDVEAGSISGSISKQKMHQDILSFIKQIELSLNRTPIIYTNTAFANEYLNNPDFANYELWLAEY-TKNQPKVPDTWKDKGYLIWQNSQSYNDFTTTTDFDVFRGRLNEL 375
            HF++ +  +E +DI PI+D+E   I  S + + + + ILS +++I+ ++N TPIIY+NT+FAN+YLNN  FANY LW+A+Y  K  P +P  WK KG+  WQ + +Y+      D DVF G   +L
Sbjct:  126 HFLNTLKGLEPTDIPPIIDIEQSGIDKSYAVEDVQESILSLLQEIDKTINTTPIIYSNTSFANKYLNNEMFANYPLWIADYDAKANPDIPSAWKTKGFTFWQKTDNYDLDGFQDDADVFNGDTEQL 251          
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Match: UPI001655EAFF (hypothetical protein n=1 Tax=Kordia aestuariivivens TaxID=2759037 RepID=UPI001655EAFF)

HSP 1 Score: 118 bits (296), Expect = 2.090e-30
Identity = 57/126 (45.24%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    1 HFISQINDIEYSDIAPIVDVEAGSISGSISKQKMHQDILSFIKQIELSLNRTPIIYTNTAFANEYLNNPDFANYELWLAEYT-KNQPKVPDTWKDKGYLIWQNSQSYNDFTTTTDFDVFRGRLNEL 375
            +F++ I  I+ +D+ PI+D E   I  S S   +  ++  FI +IE  L RTPIIYT+    N+YLN+  FA Y LW+A Y  K  P +PDTWK+KG+ +WQ S  Y    TT DFDVF G L +L
Sbjct:  124 NFLNAIATIDPTDLPPIIDFEEAGIDASQSVPDVQSNLKIFINEIEKKLKRTPIIYTDIPVGNKYLNDASFAKYPLWIANYDGKETPDLPDTWKEKGWKMWQKSDHYKTDGTTDDFDVFNGSLQDL 249          
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Match: A0A099Y372_9FLAO (Glycoside hydrolase, GH25 family n=1 Tax=Polaribacter sp. Hel1_85 TaxID=1250005 RepID=A0A099Y372_9FLAO)

HSP 1 Score: 116 bits (291), Expect = 1.040e-29
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    4 FISQINDIEYSDIAPIVDVEAGSISGSISKQKMHQDILSFIKQIELSLNRTPIIYTNTAFANEYLNNPDFANYELWLAEYT-KNQPKVPDTWKDKGYLIWQNSQSYNDFTTTTDFDVFRGRLNE 372
            +++ +N  E +DI PI+D E   I  + S + +  ++LSFIK++E   N  PIIYT+    N YLNN  F+ Y LW+A+Y  K QP +P+TWK KGYLIWQ + +Y     T D D+F G L +
Sbjct:  120 YLNTVNSFETNDIPPIIDFEEAGIDKTQSIETIQTNLLSFIKEVEKKGNVIPIIYTDINCGNTYLNNSVFSKYPLWIADYNGKKQPDLPNTWKTKGYLIWQKTDNYKIVNATDDADIFNGNLTK 243          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110754.2255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5RVR9_9BACT2.620e-4555.47Uncharacterized protein n=2 Tax=Cytophagales TaxID... [more]
A0A2A4YU67_9FLAO2.610e-4152.71Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]
A0A269PIK7_9GAMM3.340e-3546.83Uncharacterized protein n=1 Tax=Pseudoalteromonas ... [more]
UPI001AD6EB082.330e-3447.62hypothetical protein n=1 Tax=Pseudoalteromonas xia... [more]
A0A5N5ZFP7_9FLAO1.260e-3242.86Uncharacterized protein n=1 Tax=Kordia sp. TARA_03... [more]
UPI0003FC7CBA1.660e-3248.00hypothetical protein n=2 Tax=Tenacibaculum ovolyti... [more]
A0A238VBT0_9FLAO8.100e-3244.62Glycosyl hydrolases family 25 n=1 Tax=Lutibacter f... [more]
A0A2T6BSB4_9FLAO1.970e-3142.86Lysozyme n=1 Tax=Kordia periserrulae TaxID=701523 ... [more]
UPI001655EAFF2.090e-3045.24hypothetical protein n=1 Tax=Kordia aestuariiviven... [more]
A0A099Y372_9FLAO1.040e-2943.55Glycoside hydrolase, GH25 family n=1 Tax=Polaribac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110754contigM-pyrifera_M_contig110754:3..386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score118.6
Seed ortholog evalue2.1e-24
Seed eggNOG ortholog1233951.IO90_10360
Preferred nameacm
KEGG koko:K07273
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycoside Hydrolase
EggNOG OGs1I18E@117743,4NKHF@976,COG3757@1,COG3757@2
COG Functional cat.M
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.3301628-CDS-M-pyrifera_M_contig110754:2..3861622815619.3301628-CDS-M-pyrifera_M_contig110754:2..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110754 3..386 +
1692277490.4820392-CDS-M-pyrifera_M_contig110754:2..3861692277490.4820392-CDS-M-pyrifera_M_contig110754:2..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110754 3..386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110754.2255.1prot_M-pyrifera_M_contig110754.2255.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110754 3..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110754.2255.1

>prot_M-pyrifera_M_contig110754.2255.1 ID=prot_M-pyrifera_M_contig110754.2255.1|Name=mRNA_M-pyrifera_M_contig110754.2255.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
HFISQINDIEYSDIAPIVDVEAGSISGSISKQKMHQDILSFIKQIELSLN
RTPIIYTNTAFANEYLNNPDFANYELWLAEYTKNQPKVPDTWKDKGYLIW
QNSQSYNDFTTTTDFDVFRGRLNELLR*
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mRNA from alignment at M-pyrifera_M_contig110754:3..386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110754.2255.1 ID=mRNA_M-pyrifera_M_contig110754.2255.1|Name=mRNA_M-pyrifera_M_contig110754.2255.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig110754:3..386+ (Macrocystis pyrifera P11B4 male)
CATTTTATTAGTCAAATAAATGATATTGAGTATTCAGATATAGCACCGAT TGTTGATGTAGAGGCTGGAAGTATAAGTGGCTCCATATCTAAGCAGAAGA TGCATCAAGATATATTGAGTTTTATTAAACAGATAGAATTATCATTAAAT CGTACCCCAATTATTTATACTAATACTGCCTTTGCTAATGAGTATTTAAA TAATCCTGATTTTGCGAATTATGAGTTATGGTTAGCTGAATACACCAAAA ACCAACCAAAAGTGCCTGATACTTGGAAGGATAAAGGTTATCTAATTTGG CAAAATAGTCAGAGCTATAACGATTTTACTACTACTACAGATTTTGATGT GTTTAGAGGTAGATTAAATGAACTACTGAGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110754:3..386+

>mRNA_M-pyrifera_M_contig110754.2255.1 ID=mRNA_M-pyrifera_M_contig110754.2255.1|Name=mRNA_M-pyrifera_M_contig110754.2255.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig110754:3..386+ (Macrocystis pyrifera P11B4 male)
CATTTTATTAGTCAAATAAATGATATTGAGTATTCAGATATAGCACCGAT
TGTTGATGTAGAGGCTGGAAGTATAAGTGGCTCCATATCTAAGCAGAAGA
TGCATCAAGATATATTGAGTTTTATTAAACAGATAGAATTATCATTAAAT
CGTACCCCAATTATTTATACTAATACTGCCTTTGCTAATGAGTATTTAAA
TAATCCTGATTTTGCGAATTATGAGTTATGGTTAGCTGAATACACCAAAA
ACCAACCAAAAGTGCCTGATACTTGGAAGGATAAAGGTTATCTAATTTGG
CAAAATAGTCAGAGCTATAACGATTTTACTACTACTACAGATTTTGATGT
GTTTAGAGGTAGATTAAATGAACTACTGAGATAACATTTTATTAGTCAAA
TAAATGATATTGAGTATTCAGATATAGCACCGATTGTTGATGTAGAGGCT
GGAAGTATAAGTGGCTCCATATCTAAGCAGAAGATGCATCAAGATATATT
GAGTTTTATTAAACAGATAGAATTATCATTAAATCGTACCCCAATTATTT
ATACTAATACTGCCTTTGCTAATGAGTATTTAAATAATCCTGATTTTGCG
AATTATGAGTTATGGTTAGCTGAATACACCAAAAACCAACCAAAAGTGCC
TGATACTTGGAAGGATAAAGGTTATCTAATTTGGCAAAATAGTCAGAGCT
ATAACGATTTTACTACTACTACAGATTTTGATGTGTTTAGAGGTAGATTA
AATGAACTACTGAGATAA
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