mRNA_M-pyrifera_M_contig110741.2251.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110741.2251.1
Unique NamemRNA_M-pyrifera_M_contig110741.2251.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Match: D7FLH1_ECTSI (Protein YIF1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.250e-15
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 QVLTEVMSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK 132
            +VLTEV SSC+VTQLLEVLLIRLGLYLLNSPAV LDLVAYTGYK
Sbjct:  189 EVLTEVTSSCIVTQLLEVLLIRLGLYLLNSPAVVLDLVAYTGYK 232
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BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Match: A0A6H5JNN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.260e-15
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 QVLTEVMSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK 132
            +VLTEV SSC+VTQLLEVLLIRLGLYLLNSPAV LDL+AYTGYK
Sbjct:  315 EVLTEVTSSCIVTQLLEVLLIRLGLYLLNSPAVVLDLIAYTGYK 358
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BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Match: A0A835YSN9_9STRA (Protein YIF1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.820e-10
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QVLTEVMSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK 132
            +VL EV SS +V QLLEVLL+RLGLYLL +PA  LDLVA+TGYK
Sbjct:  117 EVLVEVTSSAMVVQLLEVLLVRLGLYLLGAPAAMLDLVAFTGYK 160
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BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Match: W7TGL4_9STRA (Protein YIF1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGL4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.720e-9
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 QVLTEVMSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK 132
            +VL EV SSCLV QLLE+ +IRLGLYLL +PA  LDL+A TGYK
Sbjct:  239 EVLVEVTSSCLVMQLLEIAVIRLGLYLLQAPATLLDLLAVTGYK 282
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BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Match: K0R137_THAOC (Protein YIF1 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R137_THAOC)

HSP 1 Score: 53.1 bits (126), Expect = 6.570e-7
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 QVLTEVMSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK 132
            +V+ ++ S CLVTQ+LE++ IR+G YL+ +P   LDL  YTGYK
Sbjct:  215 EVMPDICSKCLVTQILEMIAIRIGFYLMEAPVGVLDLACYTGYK 258
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BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Match: A0A024UUY6_9STRA (Protein YIF1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUY6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.240e-6
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    4 VLTEVMSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK 132
            V+T+V +SC + QLLE+ L++LGLYLLNS    LDLV++TGYK
Sbjct:  232 VITDVSTSCCLLQLLEICLMKLGLYLLNSQINWLDLVSFTGYK 274
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BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Match: A0A3R6YG55_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YG55_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    4 VLTEVMSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK 132
            V+T+V +SC + QLLE+ L++LGLYLLNS    LDLV++TGYK
Sbjct:  330 VITDVSTSCCLLQLLEICLMKLGLYLLNSQINWLDLVSFTGYK 372
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BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Match: A0A6A5A968_9STRA (Protein YIF1 n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A968_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.710e-6
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 VLTEVMSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK 132
            V+TEV + C + QL+E+ L++LGLYLLNS    LDLV++TGYK
Sbjct:  138 VITEVSTYCCLMQLVEICLMKLGLYLLNSQINWLDLVSFTGYK 180
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BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Match: W4F9U6_9STRA (Protein YIF1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4F9U6_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.150e-6
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 VLTEVMSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK 132
            V+TEV + C + QL+E+ L++LGLYLLNS    LDLV++TGYK
Sbjct:  239 VITEVSTYCCLMQLVEICLMKLGLYLLNSQINWLDLVSFTGYK 281
[Close]
BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Match: A0A397AV18_9STRA (Protein YIF1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AV18_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.150e-6
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 VLTEVMSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK 132
            V+TEV + C + QL+E+ L++LGLYLLNS    LDLV++TGYK
Sbjct:  254 VITEVSTYCCLMQLVEICLMKLGLYLLNSQINWLDLVSFTGYK 296
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110741.2251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FLH1_ECTSI1.250e-1590.91Protein YIF1 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JNN8_9PHAE3.260e-1588.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSN9_9STRA1.820e-1072.73Protein YIF1 n=1 Tax=Tribonema minus TaxID=303371 ... [more]
W7TGL4_9STRA1.720e-970.45Protein YIF1 n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
K0R137_THAOC6.570e-752.27Protein YIF1 n=1 Tax=Thalassiosira oceanica TaxID=... [more]
A0A024UUY6_9STRA1.240e-660.47Protein YIF1 n=1 Tax=Aphanomyces invadans TaxID=15... [more]
A0A3R6YG55_9STRA1.250e-660.47Rab-GAP TBC domain-containing protein n=1 Tax=Apha... [more]
A0A6A5A968_9STRA7.710e-658.14Protein YIF1 n=3 Tax=Aphanomyces astaci TaxID=1120... [more]
W4F9U6_9STRA8.150e-658.14Protein YIF1 n=2 Tax=Aphanomyces astaci TaxID=1120... [more]
A0A397AV18_9STRA8.150e-658.14Protein YIF1 n=2 Tax=Aphanomyces astaci TaxID=1120... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110741contigM-pyrifera_M_contig110741:266..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue7.6e-10
Seed eggNOG ortholog2880.D7FLH1
Preferred nameYIF1B
KEGG koko:K08023,ko:K20362
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0000902,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009306,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0023052,GO:0030134,GO:0030135,GO:0030173,GO:0030968,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032940,GO:0032989,GO:0033036,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0097708,GO:0098588,GO:0098791,GO:0098827
EggNOG free text desc.ER to Golgi vesicle-mediated transport
EggNOG OGsCOG5197@1,KOG3094@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size135
Cds size117
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.111292-UTR-M-pyrifera_M_contig110741:265..2831622815619.111292-UTR-M-pyrifera_M_contig110741:265..283Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110741 266..283 +
1692277490.4040403-UTR-M-pyrifera_M_contig110741:265..2831692277490.4040403-UTR-M-pyrifera_M_contig110741:265..283Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110741 266..283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.1237803-CDS-M-pyrifera_M_contig110741:283..4001622815619.1237803-CDS-M-pyrifera_M_contig110741:283..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110741 284..400 +
1692277490.417391-CDS-M-pyrifera_M_contig110741:283..4001692277490.417391-CDS-M-pyrifera_M_contig110741:283..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110741 284..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110741.2251.1prot_M-pyrifera_M_contig110741.2251.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110741 284..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110741.2251.1

>prot_M-pyrifera_M_contig110741.2251.1 ID=prot_M-pyrifera_M_contig110741.2251.1|Name=mRNA_M-pyrifera_M_contig110741.2251.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
MSSCLVTQLLEVLLIRLGLYLLNSPAVALDLVAYTGYK*
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mRNA from alignment at M-pyrifera_M_contig110741:266..400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110741.2251.1 ID=mRNA_M-pyrifera_M_contig110741.2251.1|Name=mRNA_M-pyrifera_M_contig110741.2251.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig110741:266..400+ (Macrocystis pyrifera P11B4 male)
CAGGTGCTCACGGAGGTAATGAGCTCTTGCTTGGTGACGCAGCTGCTGGA
GGTCCTCTTGATCCGGCTGGGGCTGTATCTGCTCAACAGCCCCGCCGTCG
CCCTCGACCTCGTCGCCTACACCGGCTACAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110741:266..400+

>mRNA_M-pyrifera_M_contig110741.2251.1 ID=mRNA_M-pyrifera_M_contig110741.2251.1|Name=mRNA_M-pyrifera_M_contig110741.2251.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig110741:266..400+ (Macrocystis pyrifera P11B4 male)
ATGAGCTCTTGCTTGGTGACGCAGCTGCTGGAGGTCCTCTTGATCCGGCT
GGGGCTGTATCTGCTCAACAGCCCCGCCGTCGCCCTCGACCTCGTCGCCT
ACACCGGCTACAAGTGAATGAGCTCTTGCTTGGTGACGCAGCTGCTGGAG
GTCCTCTTGATCCGGCTGGGGCTGTATCTGCTCAACAGCCCCGCCGTCGC
CCTCGACCTCGTCGCCTACACCGGCTACAAGTGA
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