mRNA_M-pyrifera_M_contig110654.2241.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110654.2241.1
Unique NamemRNA_M-pyrifera_M_contig110654.2241.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Match: A0A2D6U7Z2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U7Z2_9ACTN)

HSP 1 Score: 138 bits (348), Expect = 1.990e-36
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:  292 LFAPFRGWLVQPDWAPRVVAGAYDAKTPDERRAIIESNPYSYFGVTRSAGDLAPGDVPDSEELLRRGAETLRRILDVGAFAPSERAAFYAYRLSYRDHTQ 591
            LF PF GWL++P+WA RV+AGAYD K+P ERR I+ +N YSY GVTRS  DLAPGD  D   LLRRGA+TL  ILD  AFAP++ AA +AYRL+Y  H+Q
Sbjct:    6 LFEPFAGWLIRPEWAARVIAGAYDTKSPAERREIVSTNXYSYLGVTRSXEDLAPGDDADEAXLLRRGADTLXTILDAXAFAPTDHAALFAYRLTYAGHSQ 105          
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Match: A0A358A4G8_9ACTN (Uncharacterized protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A4G8_9ACTN)

HSP 1 Score: 135 bits (339), Expect = 2.300e-34
Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:  292 LFAPFRGWLVQPDWAPRVVAGAYDAKTPDERRAIIESNPYSYFGVTRSAGDLAPGDVPDSEELLRRGAETLRRILDVGAFAPSERAAFYAYRLSYRDHTQ 591
            LF PF GWL++P+WA RV+AGAYD K+P ERR I+ +NPYSY GVTRSA DL  GD     ELLRRGA+TL  ILD  AFAP+  AA +AYRL+Y  H+Q
Sbjct:    6 LFEPFAGWLIRPEWAARVIAGAYDTKSPAERREIVSTNPYSYLGVTRSAEDLPLGDDAGEAELLRRGADTLITILDADAFAPTGHAALFAYRLTYAGHSQ 105          
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Match: A0A7K1Z601_9ACTN (DUF1015 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z601_9ACTN)

HSP 1 Score: 121 bits (304), Expect = 2.790e-29
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  280 VNAPLFAPFRGWLVQPDWAPRVVAGAYDAKTPDERRAIIESNPYSYFGVTRSAGDLAPGDVPDSEELLRRGAETLRRILDVGAFAPSERAAFYAYRLSYRDHT 588
            ++APL APFRGWL++P+W+ RV+AGAYD+KT  +RRAI+E NP SY GVTRS  DL  G      +LL   +ETL RIL   AF PS+ A+F+AYRLS  D T
Sbjct:    1 MSAPLLAPFRGWLIRPEWSSRVIAGAYDSKTAAQRRAIVEQNPLSYLGVTRSHEDLIEGC--SDADLLSLSSETLERILKADAFTPSDHASFFAYRLSSPDKT 101          
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Match: A0A2E8L7U4_9ACTN (D-3-phosphoglycerate dehydrogenase n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L7U4_9ACTN)

HSP 1 Score: 116 bits (291), Expect = 1.580e-27
Identity = 59/93 (63.44%), Postives = 75/93 (80.65%), Query Frame = 2
Query:    2 YRSGSVINCVNMAAAPPRAATISIRHLDRVGVLAAVLAILRRSDLNVSPMSNRVFAGATAAVASIDVGNVPSDEVLTEIRAHEHVINVSVTLA 280
            YR+G  +NCVN+   P RAAT+++RH DRVGVLA VL ILR+ +LNVS M NRVFAG+ AAVASIDVG++PSD+++ E++A E VI VSVT A
Sbjct:  309 YRAGDPVNCVNLDPVPVRAATLTVRHHDRVGVLANVLQILRKEELNVSNMQNRVFAGSKAAVASIDVGHLPSDKIVDEVQALEDVIYVSVTPA 401          
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Match: A0A3M2GUI5_ACTSX (D-3-phosphoglycerate dehydrogenase n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GUI5_ACTSX)

HSP 1 Score: 112 bits (279), Expect = 8.070e-26
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 2
Query:    2 YRSGSVINCVNMAAAPPRAATISIRHLDRVGVLAAVLAILRRSDLNVSPMSNRVFAGATAAVASIDVGNVPSDEVLTEIRAHEHVINVSVT 274
            YRSG V+NCVN+AAAPPR  T+ +RHLDRVGVLAAV  +LRR D+NV  MSNRVF GA AAVASIDV N P+ E+L E+ +   VI V+ T
Sbjct:  308 YRSGQVVNCVNLAAAPPRTGTLVVRHLDRVGVLAAVFDLLRRHDVNVETMSNRVFEGAVAAVASIDV-NGPAAELLPELASLPDVIGVTFT 397          
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Match: A0A6B1ED94_9ACTN (D-3-phosphoglycerate dehydrogenase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1ED94_9ACTN)

HSP 1 Score: 105 bits (262), Expect = 2.150e-23
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 2
Query:    2 YRSGSVINCVNMAAAPPRAATISIRHLDRVGVLAAVLAILRRSDLNVSPMSNRVFAGATAAVASIDVGNVPSDEVLTEIRAHEHVINVSV 271
            YR+GSVINCVN+   P R AT+SIRH DRVGVLAAVL  LRR  LNV+ M NR+FAG+ AA A+IDV     D +L  +RA   VI VSV
Sbjct:  308 YRTGSVINCVNLEQTPKRTATLSIRHYDRVGVLAAVLEELRRGHLNVATMQNRIFAGSVAAAATIDVAGAVEDSLLDAVRALPDVIQVSV 397          
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Match: A0A6B0ZFE3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0ZFE3_9ACTN)

HSP 1 Score: 103 bits (258), Expect = 7.910e-23
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 2
Query:    2 YRSGSVINCVNMAAAPPRAATISIRHLDRVGVLAAVLAILRRSDLNVSPMSNRVFAGATAAVASIDVGNVPSDEVLTEIRAHEHVINVSV 271
            YR+GS+ NCVN+  AP R AT+S+RH DRVGVLA+VL  LR  DLNV+ MSNR+FAG+ AA A+IDV    S+E+L  +RA   VI VSV
Sbjct:  308 YRTGSIANCVNLEQAPHRTATLSVRHYDRVGVLASVLEELRGGDLNVANMSNRIFAGSIAAAATIDVAGDISEELLDAVRALPDVIQVSV 397          
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Match: A0A6B0WKY7_9ACTN (D-3-phosphoglycerate dehydrogenase n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WKY7_9ACTN)

HSP 1 Score: 99.4 bits (246), Expect = 3.890e-21
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 2
Query:    2 YRSGSVINCVNMAAAPPRAATISIRHLDRVGVLAAVLAILRRSDLNVSPMSNRVFAGATAAVASIDVGNVPSDEVLTEIRAHEHVINVS 268
            YR+GS+INCVN+  AP R AT+S+RH DRVGVLA+VL  +R   LNV+ MSNR+FAG+ AAVA+IDV      ++L  +RA   VI VS
Sbjct:  308 YRTGSIINCVNLEQAPHRTATLSVRHYDRVGVLASVLQEIRGCSLNVANMSNRIFAGSQAAVATIDVFGAVDQQLLDAVRALPDVIQVS 396          
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Match: A0A381T1X3_9ZZZZ (ACT domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381T1X3_9ZZZZ)

HSP 1 Score: 92.8 bits (229), Expect = 6.830e-21
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 2
Query:    2 YRSGSVINCVNMAAAPPRAATISIRHLDRVGVLAAVLAILRRSDLNVSPMSNRVFAGATAAVASIDVGNVPSDEVLTEIRAHEHVINVSVT 274
            YR GS++NCVNMA     A+TI++RH DRVGVLAAV  +LR + +NV  M N+VF G+ AAVA +DV    ++EV++++   +HVI V  T
Sbjct:   29 YRRGSLLNCVNMADDRVGASTITLRHYDRVGVLAAVFGVLREAHVNVQTMQNKVFNGSNAAVAIVDVSGEITEEVVSQLSQLDHVIQVQAT 119          
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Match: A0A382E2X8_9ZZZZ (ACT domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382E2X8_9ZZZZ)

HSP 1 Score: 92.4 bits (228), Expect = 1.780e-20
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 2
Query:    2 YRSGSVINCVNMAAAPPRAATISIRHLDRVGVLAAVLAILRRSDLNVSPMSNRVFAGATAAVASIDVGNVPSDEVLTEIRAHEHVINVSVT 274
            +R G+VINCVN+A     ++T++IRH D+VGVLA V AILR+ +LNV  M N++F G+ AA+A IDV    S+  LT++R  +H+I+V ++
Sbjct:   49 FREGNVINCVNIAKERVGSSTLTIRHYDKVGVLAEVFAILRKEELNVETMENKIFEGSKAALAIIDVSGNVSENALTQLREIDHIIHVQLS 139          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110654.2241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6U7Z2_9ACTN1.990e-3663.00Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A358A4G8_9ACTN2.300e-3463.00Uncharacterized protein n=6 Tax=Acidimicrobiaceae ... [more]
A0A7K1Z601_9ACTN2.790e-2957.28DUF1015 domain-containing protein n=2 Tax=Acidimic... [more]
A0A2E8L7U4_9ACTN1.580e-2763.44D-3-phosphoglycerate dehydrogenase n=6 Tax=Acidimi... [more]
A0A3M2GUI5_ACTSX8.070e-2664.84D-3-phosphoglycerate dehydrogenase n=1 Tax=Actinom... [more]
A0A6B1ED94_9ACTN2.150e-2361.11D-3-phosphoglycerate dehydrogenase n=2 Tax=Acidimi... [more]
A0A6B0ZFE3_9ACTN7.910e-2360.00Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6B0WKY7_9ACTN3.890e-2157.30D-3-phosphoglycerate dehydrogenase n=4 Tax=Acidimi... [more]
A0A381T1X3_9ZZZZ6.830e-2150.55ACT domain-containing protein (Fragment) n=1 Tax=m... [more]
A0A382E2X8_9ZZZZ1.780e-2048.35ACT domain-containing protein (Fragment) n=1 Tax=m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110654contigM-pyrifera_M_contig110654:2..592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.4
Seed ortholog evalue8.5e-09
Seed eggNOG ortholog1122947.FR7_1399
Preferred namegdh
KEGG rclassRC00006,RC02799
KEGG koko:K00262
KEGG ReactionR00248
KEGG Pathwayko00220,ko00250,ko00910,ko01100,map00220,map00250,map00910,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1015)
EggNOG OGs1TQSW@1239,4H3CQ@909932,COG4198@1,COG4198@2
EC1.4.1.4
COG Functional cat.S
Best tax levelNegativicutes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size591
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.5028315-CDS-M-pyrifera_M_contig110654:1..5921622815618.5028315-CDS-M-pyrifera_M_contig110654:1..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110654 2..592 +
1692277490.1122885-CDS-M-pyrifera_M_contig110654:1..5921692277490.1122885-CDS-M-pyrifera_M_contig110654:1..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110654 2..592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110654.2241.1prot_M-pyrifera_M_contig110654.2241.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110654 2..592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110654.2241.1

>prot_M-pyrifera_M_contig110654.2241.1 ID=prot_M-pyrifera_M_contig110654.2241.1|Name=mRNA_M-pyrifera_M_contig110654.2241.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
LPVRQCDQLRQHGCRTAPRRDHLDSPPRSRRCPGRCARHPPPLRPQRVAH
VQPRLRRSNRRGGEHRRRQRSERRGPHRDPRPRTRDQRVGHARVNAPLFA
PFRGWLVQPDWAPRVVAGAYDAKTPDERRAIIESNPYSYFGVTRSAGDLA
PGDVPDSEELLRRGAETLRRILDVGAFAPSERAAFYAYRLSYRDHTQ
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mRNA from alignment at M-pyrifera_M_contig110654:2..592+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110654.2241.1 ID=mRNA_M-pyrifera_M_contig110654.2241.1|Name=mRNA_M-pyrifera_M_contig110654.2241.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=591bp|location=Sequence derived from alignment at M-pyrifera_M_contig110654:2..592+ (Macrocystis pyrifera P11B4 male)
CTACCGGTCCGGCAGTGTGATCAATTGCGTCAACATGGCTGCCGCACCGC CCCGCGCCGCGACCATCTCGATTCGCCACCTCGATCGCGTCGGTGTCCTG GCCGCTGTGCTCGCCATCCTCCGCCGCTCCGACCTCAACGTGTCGCCCAT GTCCAACCGCGTCTTCGCCGGAGCAACCGCCGCGGTGGCGAGCATCGACG TCGGCAACGTTCCGAGCGACGAGGTCCTCACCGAGATCCGCGCCCACGAA CACGTGATCAACGTGTCGGTCACGCTCGCGTGAACGCACCCCTCTTCGCT CCCTTCCGAGGGTGGTTGGTCCAACCGGACTGGGCCCCTCGCGTCGTTGC CGGGGCCTACGACGCCAAGACACCCGACGAGCGTCGCGCCATCATCGAGA GCAACCCCTACAGCTACTTCGGCGTCACCCGATCAGCCGGCGACCTCGCG CCCGGTGATGTGCCCGACAGCGAGGAACTGCTGCGCCGCGGCGCCGAGAC GTTGCGCCGCATCCTCGACGTGGGCGCCTTCGCCCCTTCCGAGCGCGCCG CGTTCTATGCCTATCGGCTGAGCTATCGCGACCACACCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110654:2..592+

>mRNA_M-pyrifera_M_contig110654.2241.1 ID=mRNA_M-pyrifera_M_contig110654.2241.1|Name=mRNA_M-pyrifera_M_contig110654.2241.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig110654:2..592+ (Macrocystis pyrifera P11B4 male)
CTACCGGTCCGGCAGTGTGATCAATTGCGTCAACATGGCTGCCGCACCGC
CCCGCGCCGCGACCATCTCGATTCGCCACCTCGATCGCGTCGGTGTCCTG
GCCGCTGTGCTCGCCATCCTCCGCCGCTCCGACCTCAACGTGTCGCCCAT
GTCCAACCGCGTCTTCGCCGGAGCAACCGCCGCGGTGGCGAGCATCGACG
TCGGCAACGTTCCGAGCGACGAGGTCCTCACCGAGATCCGCGCCCACGAA
CACGTGATCAACGTGTCGGTCACGCTCGCGTGAACGCACCCCTCTTCGCT
CCCTTCCGAGGGTGGTTGGTCCAACCGGACTGGGCCCCTCGCGTCGTTGC
CGGGGCCTACGACGCCAAGACACCCGACGAGCGTCGCGCCATCATCGAGA
GCAACCCCTACAGCTACTTCGGCGTCACCCGATCAGCCGGCGACCTCGCG
CCCGGTGATGTGCCCGACAGCGAGGAACTGCTGCGCCGCGGCGCCGAGAC
GTTGCGCCGCATCCTCGACGTGGGCGCCTTCGCCCCTTCCGAGCGCGCCG
CGTTCTATGCCTATCGGCTGAGCTATCGCGACCACACCCAGCTACCGGTC
CGGCAGTGTGATCAATTGCGTCAACATGGCTGCCGCACCGCCCCGCGCCG
CGACCATCTCGATTCGCCACCTCGATCGCGTCGGTGTCCTGGCCGCTGTG
CTCGCCATCCTCCGCCGCTCCGACCTCAACGTGTCGCCCATGTCCAACCG
CGTCTTCGCCGGAGCAACCGCCGCGGTGGCGAGCATCGACGTCGGCAACG
TTCCGAGCGACGAGGTCCTCACCGAGATCCGCGCCCACGAACACGTGATC
AACGTGTCGGTCACGCTCGCGTGAACGCACCCCTCTTCGCTCCCTTCCGA
GGGTGGTTGGTCCAACCGGACTGGGCCCCTCGCGTCGTTGCCGGGGCCTA
CGACGCCAAGACACCCGACGAGCGTCGCGCCATCATCGAGAGCAACCCCT
ACAGCTACTTCGGCGTCACCCGATCAGCCGGCGACCTCGCGCCCGGTGAT
GTGCCCGACAGCGAGGAACTGCTGCGCCGCGGCGCCGAGACGTTGCGCCG
CATCCTCGACGTGGGCGCCTTCGCCCCTTCCGAGCGCGCCGCGTTCTATG
CCTATCGGCTGAGCTATCGCGACCACACCCAG
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