mRNA_M-pyrifera_M_contig110653.2240.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110653.2240.1
Unique NamemRNA_M-pyrifera_M_contig110653.2240.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Match: UPI00198FA014 (PQQ-dependent sugar dehydrogenase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI00198FA014)

HSP 1 Score: 275 bits (703), Expect = 3.680e-90
Identity = 121/149 (81.21%), Postives = 133/149 (89.26%), Query Frame = 1 
Query:    1 QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNPWRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWPRGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI 447
            QD++NLLS ILRIDVDHAEG +NYRIP DNPFVD +GARGEIWAYG RNPWR+S D +TGDLW GDVGWELWE+LDRVERGGNYGW+VMEG Q TN EWPRGPTP LPPTI+HPHSESSSITDGLTYYG+RL EL+  H+YGDYDTGK 
Sbjct:  214 QDVSNLLSAILRIDVDHAEGGKNYRIPADNPFVDLKGARGEIWAYGFRNPWRISIDKKTGDLWAGDVGWELWELLDRVERGGNYGWSVMEGRQPTNTEWPRGPTPILPPTIDHPHSESSSITDGLTYYGTRLKELNGHHIYGDYDTGKF 362
[Close]
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Match: A0A2E8CZN7_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8CZN7_9PLAN)

HSP 1 Score: 281 bits (718), Expect = 1.990e-86
Identity = 123/149 (82.55%), Postives = 136/149 (91.28%), Query Frame = 1 
Query:    1 QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNPWRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWPRGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI 447
            QD++NLLS ILR+DVDHA GE NYRIP DNPFVD +GARGEIWAYGLRNPWRMSFD +TGDLWVGDVGWELWEMLDRV+RGGNYGW+V EG QST+PE+PRGPTP LPPTI+HPHSESSS+T+GLTYYG RL ELH TH+YGDYDTGK 
Sbjct:  213 QDVSNLLSAILRLDVDHANGETNYRIPADNPFVDLDGARGEIWAYGLRNPWRMSFDRETGDLWVGDVGWELWEMLDRVQRGGNYGWSVTEGRQSTHPEFPRGPTPVLPPTIDHPHSESSSVTEGLTYYGPRLKELHGTHIYGDYDTGKF 361
[Close]
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Match: UPI0019A3B977 (PQQ-dependent sugar dehydrogenase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI0019A3B977)

HSP 1 Score: 280 bits (716), Expect = 3.250e-86
Identity = 124/149 (83.22%), Postives = 134/149 (89.93%), Query Frame = 1 
Query:    1 QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNPWRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWPRGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI 447
            QD++NLLSCILRIDVDH +  +NYRIP DNPFVD +GARGEIWAYG RNPWRMSFD +TGDLWVGDVGWELWEMLDRVERGGNYGW+VMEG QSTNPEWPRGPTP LPPTI+ PHSESSSITDGLTYYGSRL +LH  H+Y DYDTGK 
Sbjct:  194 QDVSNLLSCILRIDVDHTDDGKNYRIPADNPFVDLKGARGEIWAYGFRNPWRMSFDRKTGDLWVGDVGWELWEMLDRVERGGNYGWSVMEGRQSTNPEWPRGPTPILPPTIDVPHSESSSITDGLTYYGSRLKDLHGHHVYSDYDTGKF 342
[Close]
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Match: A0A2E7LDZ5_9PLAN (Cytochrome c domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7LDZ5_9PLAN)

HSP 1 Score: 276 bits (706), Expect = 1.140e-84
Identity = 123/149 (82.55%), Postives = 132/149 (88.59%), Query Frame = 1 
Query:    1 QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNPWRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWPRGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI 447
            QD++NL+S ILRIDVDH  GE NYRIP DNPFV+ E ARGEIWAYG RNPWRMSFD  TGDLWVGDVGWELWEMLDRVERGGNYGW+V EGNQS NPEWPRGPTP LPPTI+HPHSESSSIT+GLTYYG+RL  L  THLYGD+DTGKI
Sbjct:  219 QDVSNLMSSILRIDVDHTVGENNYRIPKDNPFVNLENARGEIWAYGFRNPWRMSFDGHTGDLWVGDVGWELWEMLDRVERGGNYGWSVREGNQSINPEWPRGPTPILPPTIDHPHSESSSITEGLTYYGTRLPSLSGTHLYGDFDTGKI 367
[Close]
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Match: UPI0019CC80E2 (PQQ-dependent sugar dehydrogenase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019CC80E2)

HSP 1 Score: 270 bits (691), Expect = 1.560e-84
Identity = 119/149 (79.87%), Postives = 130/149 (87.25%), Query Frame = 1 
Query:    1 QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNPWRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWPRGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI 447
            QD++NLLS ILRIDVDHA+G +NYRIP DNPFVD +GARGEIWAYG RNPWR+S D +TGDLW GDVGWELWE+LDRVERGGNYGW+VMEG Q TN EWPRGPTP LPPTI HPHSESSSIT+GLTYYG RL EL   H+YGDYDTGK 
Sbjct:    9 QDVSNLLSAILRIDVDHADGGKNYRIPADNPFVDLKGARGEIWAYGFRNPWRISVDKKTGDLWAGDVGWELWELLDRVERGGNYGWSVMEGRQPTNTEWPRGPTPILPPTIEHPHSESSSITEGLTYYGPRLKELQGHHIYGDYDTGKF 157
[Close]
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Match: A0A3L7UHC2_9BACT (Cytochrome c domain-containing protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A3L7UHC2_9BACT)

HSP 1 Score: 274 bits (700), Expect = 8.110e-84
Identity = 123/149 (82.55%), Postives = 134/149 (89.93%), Query Frame = 1 
Query:    1 QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNPWRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWPRGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI 447
            QD++NLLS ILRIDV+HA+  +NYRIP DNPFVD +GARGEIWAYG RNPWR+S D +TGDLWVGDVGWELWEMLDRVERGGNYGW+V+EG QSTNPEWPRGPTP LPPTI+ PHSESSSITDGLTYYGSRL EL   HLYGDYDTGKI
Sbjct:  213 QDVSNLLSSILRIDVNHADDGKNYRIPADNPFVDLKGARGEIWAYGFRNPWRISIDQKTGDLWVGDVGWELWEMLDRVERGGNYGWSVVEGRQSTNPEWPRGPTPILPPTIDVPHSESSSITDGLTYYGSRLKELQGHHLYGDYDTGKI 361
[Close]
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Match: A0A2E6AJZ6_9PLAN (Cytochrome c domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E6AJZ6_9PLAN)

HSP 1 Score: 269 bits (688), Expect = 3.790e-82
Identity = 118/149 (79.19%), Postives = 132/149 (88.59%), Query Frame = 1 
Query:    1 QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNPWRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWPRGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI 447
            QD+++LLS ILRIDVD  E ++NYRIP DNPFV  E  R EIWAYG RNPWRMSFD++TGDLWVGDVGWELWEMLDRVE+GGNYGW+ +EG QSTNPEW RGPTP LPPT++HPHSESSSITDGLTYYGSRL EL+ TH+YGDYDTGKI
Sbjct:  207 QDVSDLLSSILRIDVDQTEEDRNYRIPPDNPFVGRENTRXEIWAYGFRNPWRMSFDAETGDLWVGDVGWELWEMLDRVEKGGNYGWSXVEGRQSTNPEWERGPTPILPPTLDHPHSESSSITDGLTYYGSRLEELYGTHIYGDYDTGKI 355
[Close]
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Match: A0A2E1KQI3_9PLAN (Cytochrome c domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E1KQI3_9PLAN)

HSP 1 Score: 268 bits (684), Expect = 1.650e-81
Identity = 119/149 (79.87%), Postives = 130/149 (87.25%), Query Frame = 1 
Query:    1 QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNPWRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWPRGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI 447
            QDI+NL+S ILRIDVDH   ++NY IP DNPFV+   ARGEIWAYG RNPWRMSFD QTGDLWVGDVGWELWEMLDRVERGGNYGW+V EG QS NPEWPRGPTP LPPTI+HPHSESSSIT+GLTYYG+RL +L  THLYGD+DTGK 
Sbjct:  220 QDISNLMSAILRIDVDHTAADRNYLIPADNPFVELPTARGEIWAYGFRNPWRMSFDRQTGDLWVGDVGWELWEMLDRVERGGNYGWSVTEGRQSINPEWPRGPTPVLPPTIDHPHSESSSITEGLTYYGTRLPDLRGTHLYGDFDTGKF 368
[Close]
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Match: A0A2E7DAT1_9PLAN (Cytochrome c domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7DAT1_9PLAN)

HSP 1 Score: 267 bits (683), Expect = 1.950e-81
Identity = 121/149 (81.21%), Postives = 129/149 (86.58%), Query Frame = 1 
Query:    1 QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNPWRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWPRGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI 447
            QD++NLLS ILRIDVD  EG +NYRIP DNPFV  EGARGEIWAYG RNPWRMSFDS+TGDLWVGDVGWELWEMLDRVERGGNYGW+VMEG    NPE+PRGPT  LPPTI+HPHSESSSITDGLTYYG RL ELH  H+Y DYDTGK 
Sbjct:  212 QDVSNLLSAILRIDVDQTEGGKNYRIPNDNPFVTLEGARGEIWAYGFRNPWRMSFDSKTGDLWVGDVGWELWEMLDRVERGGNYGWSVMEGRIPANPEFPRGPTTILPPTIDHPHSESSSITDGLTYYGKRLAELHGHHVYSDYDTGKF 360
[Close]
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Match: UPI00029A896E (PQQ-dependent sugar dehydrogenase n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029A896E)

HSP 1 Score: 263 bits (671), Expect = 1.090e-79
Identity = 116/149 (77.85%), Postives = 131/149 (87.92%), Query Frame = 1 
Query:    1 QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNPWRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWPRGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI 447
            QD+++LLS ILRIDVDH E  +NYRIP DNPFV+  GARGEIWAYGLRNPWRMSFD +TGDLWVGDVGWELWEMLDR+ERGGNYGWAV+EG  +T+PEWPRGPTP LPPTI+  H ESSSITDGLTYYG+RL EL+ TH+Y DYDTG+ 
Sbjct:  212 QDLSDLLSSILRIDVDHPELGRNYRIPADNPFVETPGARGEIWAYGLRNPWRMSFDRKTGDLWVGDVGWELWEMLDRIERGGNYGWAVLEGRMATHPEWPRGPTPILPPTIDLSHDESSSITDGLTYYGTRLKELYGTHIYSDYDTGRF 360
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110653.2240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00198FA0143.680e-9081.21PQQ-dependent sugar dehydrogenase n=1 Tax=Pirellul... [more]
A0A2E8CZN7_9PLAN1.990e-8682.55Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI0019A3B9773.250e-8683.22PQQ-dependent sugar dehydrogenase n=1 Tax=Planctom... [more]
A0A2E7LDZ5_9PLAN1.140e-8482.55Cytochrome c domain-containing protein n=1 Tax=Pla... [more]
UPI0019CC80E21.560e-8479.87PQQ-dependent sugar dehydrogenase n=1 Tax=Pirellul... [more]
A0A3L7UHC2_9BACT8.110e-8482.55Cytochrome c domain-containing protein n=2 Tax=Pla... [more]
A0A2E6AJZ6_9PLAN3.790e-8279.19Cytochrome c domain-containing protein n=1 Tax=Pla... [more]
A0A2E1KQI3_9PLAN1.650e-8179.87Cytochrome c domain-containing protein n=1 Tax=Pla... [more]
A0A2E7DAT1_9PLAN1.950e-8181.21Cytochrome c domain-containing protein n=1 Tax=Pla... [more]
UPI00029A896E1.090e-7977.85PQQ-dependent sugar dehydrogenase n=1 Tax=Schlesne... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110653contigM-pyrifera_M_contig110653:138..584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score263.8
Seed ortholog evalue4.7e-68
Seed eggNOG ortholog1123242.JH636435_gene1205
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glucose / Sorbosone dehydrogenase
EggNOG OGs2IXS5@203682,COG2133@1,COG2133@2
COG Functional cat.G
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.4627821-CDS-M-pyrifera_M_contig110653:137..5841622815618.4627821-CDS-M-pyrifera_M_contig110653:137..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110653 138..584 -
1692277490.1005845-CDS-M-pyrifera_M_contig110653:137..5841692277490.1005845-CDS-M-pyrifera_M_contig110653:137..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110653 138..584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110653.2240.1prot_M-pyrifera_M_contig110653.2240.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110653 138..584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110653.2240.1

>prot_M-pyrifera_M_contig110653.2240.1 ID=prot_M-pyrifera_M_contig110653.2240.1|Name=mRNA_M-pyrifera_M_contig110653.2240.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
QDITNLLSCILRIDVDHAEGEQNYRIPTDNPFVDHEGARGEIWAYGLRNP
WRMSFDSQTGDLWVGDVGWELWEMLDRVERGGNYGWAVMEGNQSTNPEWP
RGPTPFLPPTINHPHSESSSITDGLTYYGSRLNELHSTHLYGDYDTGKI
back to top

mRNA from alignment at M-pyrifera_M_contig110653:138..584-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110653.2240.1 ID=mRNA_M-pyrifera_M_contig110653.2240.1|Name=mRNA_M-pyrifera_M_contig110653.2240.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig110653:138..584- (Macrocystis pyrifera P11B4 male)
CAGGATATCACGAACCTGTTGTCATGCATCCTGCGGATCGACGTCGACCA
TGCCGAGGGCGAACAGAACTACCGCATTCCGACAGACAATCCGTTCGTTG
ATCATGAGGGAGCCCGCGGCGAAATCTGGGCCTATGGTCTTCGCAATCCC
TGGCGGATGAGTTTCGATTCCCAGACTGGTGATTTGTGGGTCGGTGATGT
GGGCTGGGAGTTATGGGAGATGCTCGATCGCGTCGAGCGAGGCGGCAACT
ATGGCTGGGCCGTGATGGAGGGGAATCAATCTACCAACCCGGAATGGCCA
CGCGGACCGACCCCCTTTCTGCCTCCCACCATCAACCATCCCCACTCGGA
GTCCTCCTCCATCACCGACGGCTTGACCTACTATGGTTCGCGGCTCAACG
AACTCCACAGCACACATCTCTACGGCGACTATGACACCGGCAAGATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110653:138..584-

>mRNA_M-pyrifera_M_contig110653.2240.1 ID=mRNA_M-pyrifera_M_contig110653.2240.1|Name=mRNA_M-pyrifera_M_contig110653.2240.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig110653:138..584- (Macrocystis pyrifera P11B4 male)
CAGGATATCACGAACCTGTTGTCATGCATCCTGCGGATCGACGTCGACCA
TGCCGAGGGCGAACAGAACTACCGCATTCCGACAGACAATCCGTTCGTTG
ATCATGAGGGAGCCCGCGGCGAAATCTGGGCCTATGGTCTTCGCAATCCC
TGGCGGATGAGTTTCGATTCCCAGACTGGTGATTTGTGGGTCGGTGATGT
GGGCTGGGAGTTATGGGAGATGCTCGATCGCGTCGAGCGAGGCGGCAACT
ATGGCTGGGCCGTGATGGAGGGGAATCAATCTACCAACCCGGAATGGCCA
CGCGGACCGACCCCCTTTCTGCCTCCCACCATCAACCATCCCCACTCGGA
GTCCTCCTCCATCACCGACGGCTTGACCTACTATGGTTCGCGGCTCAACG
AACTCCACAGCACACATCTCTACGGCGACTATGACACCGGCAAGATCCAG
GATATCACGAACCTGTTGTCATGCATCCTGCGGATCGACGTCGACCATGC
CGAGGGCGAACAGAACTACCGCATTCCGACAGACAATCCGTTCGTTGATC
ATGAGGGAGCCCGCGGCGAAATCTGGGCCTATGGTCTTCGCAATCCCTGG
CGGATGAGTTTCGATTCCCAGACTGGTGATTTGTGGGTCGGTGATGTGGG
CTGGGAGTTATGGGAGATGCTCGATCGCGTCGAGCGAGGCGGCAACTATG
GCTGGGCCGTGATGGAGGGGAATCAATCTACCAACCCGGAATGGCCACGC
GGACCGACCCCCTTTCTGCCTCCCACCATCAACCATCCCCACTCGGAGTC
CTCCTCCATCACCGACGGCTTGACCTACTATGGTTCGCGGCTCAACGAAC
TCCACAGCACACATCTCTACGGCGACTATGACACCGGCAAGATC
back to top