mRNA_M-pyrifera_M_contig110642.2236.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110642.2236.1
Unique NamemRNA_M-pyrifera_M_contig110642.2236.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Match: A0A518ACA4_9PLAN (Inner membrane protein YqiK n=11 Tax=Gimesia TaxID=1649453 RepID=A0A518ACA4_9PLAN)

HSP 1 Score: 287 bits (735), Expect = 7.220e-91
Identity = 152/160 (95.00%), Postives = 157/160 (98.12%), Query Frame = 1
Query:    1 HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKVSSFMKAKVES 480
            HEEFKIK+NK KDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQ+FISRFGMSFED KNLS+AALISQL+VQAESDEDRSTLNRLLATVKNLGISD+KVSSFM AKVES
Sbjct:  541 HEEFKIKINKEKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQSFISRFGMSFEDVKNLSVAALISQLVVQAESDEDRSTLNRLLATVKNLGISDRKVSSFMNAKVES 700          
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Match: A0A517VJF1_9PLAN (Inner membrane protein YqiK n=9 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VJF1_9PLAN)

HSP 1 Score: 281 bits (719), Expect = 1.670e-88
Identity = 148/159 (93.08%), Postives = 156/159 (98.11%), Query Frame = 1
Query:    1 HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKVSSFMKAKVE 477
            HEEFKI+LNK K+IELAAI+AQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFED KNLSIAALISQ+LVQAE +EDRSTLNRLLATVKNLGI+D+KVSSF+KAKVE
Sbjct:  540 HEEFKIRLNKDKEIELAAIAAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDVKNLSIAALISQMLVQAEGEEDRSTLNRLLATVKNLGIADKKVSSFLKAKVE 698          
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Match: A0A517VSM3_9PLAN (Inner membrane protein YqiK n=4 Tax=Gimesia TaxID=1649453 RepID=A0A517VSM3_9PLAN)

HSP 1 Score: 270 bits (691), Expect = 3.380e-84
Identity = 139/157 (88.54%), Postives = 152/157 (96.82%), Query Frame = 1
Query:    1 HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKVSSFMKAK 471
            HEEFKI++NK KDIELAAI AQ++IAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGK++DRFVHNSET+TDIKNTFFNGNPDYFEDQLQTFISRFGMSFED KNLS+AALISQL+VQ +SDED+S LNRLLATVKNLGIS+QKVSSF+KAK
Sbjct:  558 HEEFKIQINKDKDIELAAIDAQKDIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKAVDRFVHNSETMTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDVKNLSVAALISQLIVQTDSDEDKSVLNRLLATVKNLGISEQKVSSFIKAK 714          
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Match: A0A5C6BHT5_9PLAN (Inner membrane protein YqiK n=4 Tax=Symmachiella TaxID=2795780 RepID=A0A5C6BHT5_9PLAN)

HSP 1 Score: 226 bits (575), Expect = 2.540e-67
Identity = 111/153 (72.55%), Postives = 137/153 (89.54%), Query Frame = 1
Query:    1 HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKVSSF 459
            HEEFK++LNK KDIE+AAISAQQEIAE+QAGIVGEALKSARIDIVGGETTFFDKIVDSIK+GKS+DRFVHNSE LTD+KN+FFNGNP+YF D+LQ F+ +F MSF+D K+LS+AALI ++L   +SDE +S LNR+L+ VK +GI+D+KV++ 
Sbjct:  531 HEEFKLRLNKEKDIEIAAISAQQEIAESQAGIVGEALKSARIDIVGGETTFFDKIVDSIKAGKSVDRFVHNSEVLTDVKNSFFNGNPEYFRDKLQEFVDQFNMSFDDVKDLSVAALIGKMLTLTDSDESKSELNRMLSAVKGMGIADKKVNTL 683          
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Match: A0A5Q4H2F6_9PLAN (Flotillin family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A5Q4H2F6_9PLAN)

HSP 1 Score: 207 bits (528), Expect = 1.620e-60
Identity = 106/153 (69.28%), Postives = 131/153 (85.62%), Query Frame = 1
Query:    1 HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKVSSF 459
            HEEFK+ LNK KDIELAAI AQ+EIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGK++DR+VHNSETLTD+KNTFFNGNPDYF D+L+  + +F +S ED K+LSIAALI++++   +SD+ +S L+RLL   K +G++D K ++ 
Sbjct:  536 HEEFKLHLNKQKDIELAAIGAQREIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKAVDRWVHNSETLTDVKNTFFNGNPDYFRDRLEQLLGQFHLSAEDVKDLSIAALIAKMMGLTDSDQVKSELSRLLDMAKRVGMADSKAAAL 688          
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Match: A0A7C7X7U9_9PLAN (Flotillin family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7X7U9_9PLAN)

HSP 1 Score: 203 bits (516), Expect = 1.050e-58
Identity = 103/160 (64.38%), Postives = 131/160 (81.88%), Query Frame = 1
Query:    1 HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKVSSFMKAKVES 480
            HEEFK++LNK KDIE+A I AQ++IA+AQA IVGEALK ARIDIVGGETTFFD+IVDS+K+GKSIDR VHNSETLTD+KNTFFNGNPDYF D++Q  +  F +S +D K+LSIAALI++LL   ++DE RS L RLL   +++G++D++VS+    K  S
Sbjct:  543 HEEFKLRLNKTKDIEIAGIEAQKDIADAQATIVGEALKQARIDIVGGETTFFDRIVDSVKAGKSIDRLVHNSETLTDVKNTFFNGNPDYFRDKVQQLVEEFDLSTDDVKDLSIAALIAKLLGLTKADETRSELQRLLGMAQSIGLADRQVSTLNLGKETS 702          
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Match: A0A2E8FLC9_9PLAN (Flotillin n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8FLC9_9PLAN)

HSP 1 Score: 199 bits (505), Expect = 5.050e-57
Identity = 97/153 (63.40%), Postives = 129/153 (84.31%), Query Frame = 1
Query:    1 HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKVSSF 459
            HEEFK++LNK KDIE+AAI AQQ+IAEAQA IVGEALK+ARIDIVGGETTFFDKIVDS+K+GKS+DR++ NSE LTD+KNTFFNG+ +YF  QL+ F ++FG+SFED K+LS+AAL+ +++  A+SD D+S L  LL   +  G++++K++S 
Sbjct:  558 HEEFKLQLNKDKDIEIAAIGAQQQIAEAQAEIVGEALKTARIDIVGGETTFFDKIVDSVKAGKSVDRYISNSEVLTDVKNTFFNGDNEYFSAQLRAFATQFGVSFEDVKDLSVAALVGRMITMADSDSDKSKLEDLLRVFRGTGLANEKIASL 710          
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Match: A0A518AQE3_9BACT (Inner membrane protein YqiK n=2 Tax=Aeoliella mucimassa TaxID=2527972 RepID=A0A518AQE3_9BACT)

HSP 1 Score: 198 bits (503), Expect = 7.540e-57
Identity = 98/153 (64.05%), Postives = 129/153 (84.31%), Query Frame = 1
Query:    1 HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKVSSF 459
            HEEFK++LNK KDIE+AAI AQQEIAEAQ+ +VGEALKSARIDIVGGE+ FFDKIVDS+K GK++DRF+HNSE LTD+KNTFFNGN +YF+++ Q  + +F +S +D K+LSI+ALI ++L   ++DE RS LNRLL TV  LG+SD+++++ 
Sbjct:  542 HEEFKLRLNKDKDIEIAAIQAQQEIAEAQSTLVGEALKSARIDIVGGESEFFDKIVDSVKGGKAVDRFIHNSEVLTDVKNTFFNGNSEYFKEKTQQLVDQFNLSPDDVKDLSISALILKMLGMTDADETRSELNRLLDTVHQLGVSDKRLAAL 694          
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Match: A0A2D6SZF0_9PLAN (Flotillin n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SZF0_9PLAN)

HSP 1 Score: 193 bits (490), Expect = 5.230e-55
Identity = 101/154 (65.58%), Postives = 129/154 (83.77%), Query Frame = 1
Query:    1 HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPD-YFEDQLQTFISRFGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKVSSF 459
            HEEFKI+LNK KDIE+AAI+AQ EIAEAQ+ IVGEALKSARIDIVGGET FFDKIVDSIK GKS+DRFV+NS+ LTDIK+TFF+G     F+D+L+ F+S FGMSFED K++S+AALIS++L+Q+ES E +  L  L+  +K  G++D++V+S 
Sbjct:  536 HEEFKIRLNKDKDIEIAAIAAQTEIAEAQSTIVGEALKSARIDIVGGETVFFDKIVDSIKGGKSVDRFVNNSQVLTDIKDTFFDGGEGGEFKDKLREFVSHFGMSFEDVKDMSVAALISKMLLQSESSEQKGDLQGLMKFIKGAGLADRRVASL 689          
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Match: A0A2E7RZR6_9PLAN (Flotillin n=5 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7RZR6_9PLAN)

HSP 1 Score: 193 bits (490), Expect = 6.620e-55
Identity = 97/153 (63.40%), Postives = 126/153 (82.35%), Query Frame = 1
Query:    1 HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETTFFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISRFGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKVSSF 459
            HEEFK++LNK KDIE+AAI AQQ IAEAQA IVGEALK++ IDIVGGETTFFDKIVDSIK+GKS+DRFV NS+ LTD+KNTFFNG+ +YF  QL+ F  +FG+SFED K+LS+AAL+ +L+  A++++D+S L  LL   +  G++ QKV++ 
Sbjct:  557 HEEFKLQLNKDKDIEIAAIDAQQNIAEAQAEIVGEALKNSTIDIVGGETTFFDKIVDSIKAGKSVDRFVGNSDVLTDVKNTFFNGDNEYFAAQLRQFTGQFGVSFEDVKDLSVAALVGRLITMADNEDDKSRLEDLLRVFRGAGVASQKVATL 709          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110642.2236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518ACA4_9PLAN7.220e-9195.00Inner membrane protein YqiK n=11 Tax=Gimesia TaxID... [more]
A0A517VJF1_9PLAN1.670e-8893.08Inner membrane protein YqiK n=9 Tax=Planctomycetac... [more]
A0A517VSM3_9PLAN3.380e-8488.54Inner membrane protein YqiK n=4 Tax=Gimesia TaxID=... [more]
A0A5C6BHT5_9PLAN2.540e-6772.55Inner membrane protein YqiK n=4 Tax=Symmachiella T... [more]
A0A5Q4H2F6_9PLAN1.620e-6069.28Flotillin family protein n=1 Tax=Planctomycetaceae... [more]
A0A7C7X7U9_9PLAN1.050e-5864.38Flotillin family protein n=1 Tax=Planctomycetaceae... [more]
A0A2E8FLC9_9PLAN5.050e-5763.40Flotillin n=1 Tax=Planctomycetaceae bacterium TaxI... [more]
A0A518AQE3_9BACT7.540e-5764.05Inner membrane protein YqiK n=2 Tax=Aeoliella muci... [more]
A0A2D6SZF0_9PLAN5.230e-5565.58Flotillin n=1 Tax=Planctomycetaceae bacterium TaxI... [more]
A0A2E7RZR6_9PLAN6.620e-5563.40Flotillin n=5 Tax=Planctomycetaceae bacterium TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110642contigM-pyrifera_M_contig110642:110..592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score283.5
Seed ortholog evalue6.2e-74
Seed eggNOG ortholog344747.PM8797T_19692
Preferred nameyqiK
KEGG koko:K07192
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Band 7 protein
EggNOG OGs2IXVC@203682,COG2268@1,COG2268@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Exons1
Model size483
Cds size483
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.3042157-CDS-M-pyrifera_M_contig110642:109..5921622815618.3042157-CDS-M-pyrifera_M_contig110642:109..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110642 110..592 -
1692277490.0396338-CDS-M-pyrifera_M_contig110642:109..5921692277490.0396338-CDS-M-pyrifera_M_contig110642:109..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110642 110..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110642.2236.1prot_M-pyrifera_M_contig110642.2236.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110642 110..592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110642.2236.1

>prot_M-pyrifera_M_contig110642.2236.1 ID=prot_M-pyrifera_M_contig110642.2236.1|Name=mRNA_M-pyrifera_M_contig110642.2236.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
HEEFKIKLNKAKDIELAAISAQQEIAEAQAGIVGEALKSARIDIVGGETT
FFDKIVDSIKSGKSIDRFVHNSETLTDIKNTFFNGNPDYFEDQLQTFISR
FGMSFEDAKNLSIAALISQLLVQAESDEDRSTLNRLLATVKNLGISDQKV
SSFMKAKVES*
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mRNA from alignment at M-pyrifera_M_contig110642:110..592-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110642.2236.1 ID=mRNA_M-pyrifera_M_contig110642.2236.1|Name=mRNA_M-pyrifera_M_contig110642.2236.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig110642:110..592- (Macrocystis pyrifera P11B4 male)
CACGAAGAATTCAAGATCAAACTCAACAAGGCGAAAGATATCGAACTGGC AGCGATTTCGGCTCAACAGGAGATCGCCGAGGCTCAGGCCGGTATTGTCG GCGAGGCTCTCAAGTCGGCCCGGATCGACATCGTGGGTGGCGAAACCACC TTCTTCGATAAGATTGTGGACTCGATCAAGAGTGGTAAATCCATCGATCG CTTCGTGCACAACAGTGAAACCCTGACGGATATCAAGAACACGTTCTTCA ACGGAAATCCGGACTACTTTGAAGACCAGCTCCAGACCTTTATCTCCCGG TTTGGCATGTCCTTCGAAGATGCCAAGAACCTGTCGATTGCCGCTTTGAT CTCACAGCTGCTCGTTCAGGCCGAGAGCGATGAAGACCGTTCGACGCTGA ACCGCCTGCTGGCGACCGTCAAAAATCTCGGAATCTCCGACCAGAAGGTA TCCTCCTTTATGAAAGCCAAGGTGGAATCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110642:110..592-

>mRNA_M-pyrifera_M_contig110642.2236.1 ID=mRNA_M-pyrifera_M_contig110642.2236.1|Name=mRNA_M-pyrifera_M_contig110642.2236.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig110642:110..592- (Macrocystis pyrifera P11B4 male)
CACGAAGAATTCAAGATCAAACTCAACAAGGCGAAAGATATCGAACTGGC
AGCGATTTCGGCTCAACAGGAGATCGCCGAGGCTCAGGCCGGTATTGTCG
GCGAGGCTCTCAAGTCGGCCCGGATCGACATCGTGGGTGGCGAAACCACC
TTCTTCGATAAGATTGTGGACTCGATCAAGAGTGGTAAATCCATCGATCG
CTTCGTGCACAACAGTGAAACCCTGACGGATATCAAGAACACGTTCTTCA
ACGGAAATCCGGACTACTTTGAAGACCAGCTCCAGACCTTTATCTCCCGG
TTTGGCATGTCCTTCGAAGATGCCAAGAACCTGTCGATTGCCGCTTTGAT
CTCACAGCTGCTCGTTCAGGCCGAGAGCGATGAAGACCGTTCGACGCTGA
ACCGCCTGCTGGCGACCGTCAAAAATCTCGGAATCTCCGACCAGAAGGTA
TCCTCCTTTATGAAAGCCAAGGTGGAATCGTAACACGAAGAATTCAAGAT
CAAACTCAACAAGGCGAAAGATATCGAACTGGCAGCGATTTCGGCTCAAC
AGGAGATCGCCGAGGCTCAGGCCGGTATTGTCGGCGAGGCTCTCAAGTCG
GCCCGGATCGACATCGTGGGTGGCGAAACCACCTTCTTCGATAAGATTGT
GGACTCGATCAAGAGTGGTAAATCCATCGATCGCTTCGTGCACAACAGTG
AAACCCTGACGGATATCAAGAACACGTTCTTCAACGGAAATCCGGACTAC
TTTGAAGACCAGCTCCAGACCTTTATCTCCCGGTTTGGCATGTCCTTCGA
AGATGCCAAGAACCTGTCGATTGCCGCTTTGATCTCACAGCTGCTCGTTC
AGGCCGAGAGCGATGAAGACCGTTCGACGCTGAACCGCCTGCTGGCGACC
GTCAAAAATCTCGGAATCTCCGACCAGAAGGTATCCTCCTTTATGAAAGC
CAAGGTGGAATCGTAA
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