mRNA_M-pyrifera_M_contig110614.2228.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110614.2228.1
Unique NamemRNA_M-pyrifera_M_contig110614.2228.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Match: A0A137PEG4_CONC2 (Profilin n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PEG4_CONC2)

HSP 1 Score: 94.7 bits (234), Expect = 1.620e-23
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGFNNPMAIQGSGVMIGGTKY 204
            MSWQ+YVD  L+GTG  +KAAIIGHDGNTWA SAGF +SP EGAA+A G+ +  +I+GSG+ + G KY
Sbjct:    1 MSWQAYVDTSLIGTGKVSKAAIIGHDGNTWATSAGFTVSPAEGAAIANGYTDANSIRGSGIHLNGEKY 68
[Close]
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Match: A0A7S3NSF8_EUPCR (Profilin n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3NSF8_EUPCR)

HSP 1 Score: 92.4 bits (228), Expect = 2.560e-22
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGFNNPMAIQGSGVMIGGTKYM 207
            MSWQSYVD  LVGTG  A AAIIGHDGNTWA SAGF +SP EG  +A+ F NP  I  +G+++ G KY+
Sbjct:   26 MSWQSYVDSNLVGTGKIASAAIIGHDGNTWATSAGFAVSPAEGKKVASAFANPSDIIATGIVLAGNKYL 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Match: PROF2_ACACA (Profilin-2 n=2 Tax=Acanthamoeba castellanii TaxID=5755 RepID=PROF2_ACACA)

HSP 1 Score: 88.2 bits (217), Expect = 6.170e-21
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGFNNPMAIQGSGVMIGGTKYM 207
            MSWQ+YVD  LVGTG   +AAIIGHDGNTWA SAGF +SP  GAALA  F +  AI+ +G  + GT+Y+
Sbjct:    1 MSWQTYVDTNLVGTGAVTQAAIIGHDGNTWATSAGFAVSPANGAALANAFKDATAIRSNGFELAGTRYV 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Match: A0A7S1E4L2_HEMAN (Profilin n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1E4L2_HEMAN)

HSP 1 Score: 86.3 bits (212), Expect = 4.250e-20
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGFNNPMAIQGSGVMIGGTKYM 207
            MSWQ YVDQQLV +G+ +K AIIG DG+ WAIS GF L P E AA+AA   NP ++ G GV I G KYM
Sbjct:    8 MSWQGYVDQQLVASGHVSKGAIIGLDGSQWAISPGFNLDPSEAAAIAAAARNPSSVLGGGVNIMGVKYM 76
[Close]
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Match: A0A1Y2CFL0_9BASI (Profilin n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2CFL0_9BASI)

HSP 1 Score: 83.6 bits (205), Expect = 4.070e-19
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGFNNPMAIQGSGVMIGGTKYM 207
            MSWQ+YVD  L+GTG  AKAAI+G  G  WA SAG++LSP+E AA+ A F++P   QG+GV   G K+M
Sbjct:    1 MSWQTYVDSNLLGTGKIAKAAILGQQGGVWAQSAGYELSPEEQAAIVAAFSDPTNAQGNGVRAQGVKFM 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Match: A0A7S0T333_9CHLO (Profilin n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T333_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 7.270e-19
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGFNNPMAIQGSGVMIGGTKYM 207
            MSWQSYVD  L+GTG+  KAAI G DG  WA SAGF +SP+E A + AG  +P  IQ  G+ IGG K+M
Sbjct:   10 MSWQSYVDDHLIGTGHVTKAAICGVDGALWASSAGFDVSPEEVAKIVAGMADPSGIQAGGIYIGGEKWM 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Match: A0A409X304_PSICY (Profilin n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409X304_PSICY)

HSP 1 Score: 81.6 bits (200), Expect = 2.330e-18
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGFNNPMAIQGSGVMIGGTKY 204
            MSWQ+YVD  L+GTG  AKAAIIG  G  WA S GF +SP+E  A+ AGF  P AIQ SGV + G K+
Sbjct:    1 MSWQTYVDSNLLGTGKVAKAAIIGLAGGVWASSPGFTISPEEQKAIIAGFGTPDAIQASGVRLAGQKF 68
[Close]
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Match: A0A507DR95_9FUNG (Profilin n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DR95_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 6.030e-18
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGFNNPMAIQGSGVMIGGTKYM 207
            MSWQ YVD  L+GTG   KAAI G DG+ WA SAGF + P E AA+  GF +P  ++ SG+ I G KYM
Sbjct:    1 MSWQQYVDSNLLGTGKVQKAAIHGLDGSLWATSAGFSVGPAEAAAIVKGFTDPSGLRASGIFIVGEKYM 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Match: A0A0P1BPM4_9BASI (Profilin n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A0P1BPM4_9BASI)

HSP 1 Score: 80.5 bits (197), Expect = 6.630e-18
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGFNNPMAIQGSGVMIGGTKY 204
            MSWQ YVD  LVGTGN   AAI+G  G  WA SAGF ++PQE  A+ +GF++P  +Q  G+  GG KY
Sbjct:    1 MSWQGYVDTNLVGTGNVTAAAILGLKGGVWASSAGFTITPQEQQAIVSGFDDPSPLQAGGIHAGGKKY 68
[Close]
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Match: A0A316VJX6_9BASI (Profilin n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VJX6_9BASI)

HSP 1 Score: 80.5 bits (197), Expect = 6.630e-18
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGFNNPMAIQGSGVMIGGTKY 204
            MSWQSYVD  LVGTG    AAI+GH G  WA SAGF+ + QE  AL +GF++P  +Q  G+ + G KY
Sbjct:    1 MSWQSYVDTNLVGTGEVTSAAIVGHKGGVWASSAGFQPNQQEITALVSGFDDPSPLQAGGIHVNGVKY 68
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110614.2228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A137PEG4_CONC21.620e-2363.24Profilin n=1 Tax=Conidiobolus coronatus (strain AT... [more]
A0A7S3NSF8_EUPCR2.560e-2262.32Profilin n=1 Tax=Euplotes crassus TaxID=5936 RepID... [more]
PROF2_ACACA6.170e-2160.87Profilin-2 n=2 Tax=Acanthamoeba castellanii TaxID=... [more]
A0A7S1E4L2_HEMAN4.250e-2060.87Profilin n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7... [more]
A0A1Y2CFL0_9BASI4.070e-1956.52Profilin n=1 Tax=Leucosporidium creatinivorum TaxI... [more]
A0A7S0T333_9CHLO7.270e-1957.97Profilin n=1 Tax=Mantoniella antarctica TaxID=8184... [more]
A0A409X304_PSICY2.330e-1858.82Profilin n=1 Tax=Psilocybe cyanescens TaxID=93625 ... [more]
A0A507DR95_9FUNG6.030e-1855.07Profilin n=1 Tax=Powellomyces hirtus TaxID=109895 ... [more]
A0A0P1BPM4_9BASI6.630e-1854.41Profilin n=2 Tax=Ceraceosorus TaxID=401624 RepID=A... [more]
A0A316VJX6_9BASI6.630e-1854.41Profilin n=1 Tax=Meira miltonrushii TaxID=1280837 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110614contigM-pyrifera_M_contig110614:391..597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score81.3
Seed ortholog evalue2e-13
Seed eggNOG ortholog946362.XP_004988807.1
Preferred namePFY1
KEGG koko:K05759
KEGG Pathwayko04013,ko04015,ko04810,ko05131,ko05132,map04013,map04015,map04810,map05131,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0000281,GO:0000746,GO:0000747,GO:0000755,GO:0000910,GO:0000912,GO:0000915,GO:0003674,GO:0003779,GO:0003785,GO:0005085,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005937,GO:0005938,GO:0006810,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008064,GO:0008092,GO:0008104,GO:0008150,GO:0008154,GO:0008289,GO:0009653,GO:0009987,GO:0010638,GO:0010639,GO:0010927,GO:0015629,GO:0016020,GO:0016043,GO:0019897,GO:0019898,GO:0019899,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030154,GO:0030239,GO:0030427,GO:0030479,GO:0030832,GO:0030833,GO:0030834,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0031097,GO:0031333,GO:0032091,GO:0032153,GO:0032155,GO:0032231,GO:0032233,GO:0032271,GO:0032272,GO:0032502,GO:0032505,GO:0032506,GO:0032507,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0033036,GO:0033043,GO:0034613,GO:0034622,GO:0035091,GO:0042692,GO:0042989,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043254,GO:0043292,GO:0043332,GO:0043393,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044449,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045185,GO:0046907,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051020,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051130,GO:0051146,GO:0051179,GO:0051234,GO:0051235,GO:0051258,GO:0051285,GO:0051286,GO:0051301,GO:0051493,GO:0051494,GO:0051495,GO:0051641,GO:0051649,GO:0051651,GO:0051704,GO:0055001,GO:0055002,GO:0055120,GO:0061061,GO:0061640,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070064,GO:0070727,GO:0070925,GO:0071689,GO:0071840,GO:0071944,GO:0090066,GO:0090337,GO:0090338,GO:0097435,GO:0098772,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901981,GO:1902407,GO:1902410,GO:1902903,GO:1902904,GO:1902905,GO:1902936,GO:1903047,GO:1903475,GO:1904529,GO:1904530,GO:1904616,GO:1904617,GO:2000812
EggNOG free text desc.Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations
EggNOG OGs3A5ND@33154,KOG1755@1,KOG1755@2759
Ec32 ortholog descriptionprofilin
Ec32 orthologEc-12_005550.1
COG Functional cat.Z
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Exons1
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.940065-CDS-M-pyrifera_M_contig110614:390..5971622815617.940065-CDS-M-pyrifera_M_contig110614:390..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110614 391..597 +
1692277489.8969104-CDS-M-pyrifera_M_contig110614:390..5971692277489.8969104-CDS-M-pyrifera_M_contig110614:390..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110614 391..597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110614.2228.1prot_M-pyrifera_M_contig110614.2228.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110614 391..597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110614.2228.1

>prot_M-pyrifera_M_contig110614.2228.1 ID=prot_M-pyrifera_M_contig110614.2228.1|Name=mRNA_M-pyrifera_M_contig110614.2228.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
MSWQSYVDQQLVGTGNCAKAAIIGHDGNTWAISAGFKLSPQEGAALAAGF
NNPMAIQGSGVMIGGTKYM
back to top

mRNA from alignment at M-pyrifera_M_contig110614:391..597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110614.2228.1 ID=mRNA_M-pyrifera_M_contig110614.2228.1|Name=mRNA_M-pyrifera_M_contig110614.2228.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig110614:391..597+ (Macrocystis pyrifera P11B4 male)
ATGTCGTGGCAGTCATACGTCGACCAGCAGCTCGTTGGAACCGGAAACTG
CGCCAAGGCCGCCATCATTGGCCATGACGGAAACACCTGGGCCATTTCCG
CTGGCTTCAAGCTCTCCCCCCAGGAGGGTGCCGCTCTTGCCGCTGGCTTC
AACAACCCCATGGCCATCCAGGGCTCCGGAGTCATGATTGGAGGAACCAA
GTACATG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110614:391..597+

>mRNA_M-pyrifera_M_contig110614.2228.1 ID=mRNA_M-pyrifera_M_contig110614.2228.1|Name=mRNA_M-pyrifera_M_contig110614.2228.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig110614:391..597+ (Macrocystis pyrifera P11B4 male)
ATGTCGTGGCAGTCATACGTCGACCAGCAGCTCGTTGGAACCGGAAACTG
CGCCAAGGCCGCCATCATTGGCCATGACGGAAACACCTGGGCCATTTCCG
CTGGCTTCAAGCTCTCCCCCCAGGAGGGTGCCGCTCTTGCCGCTGGCTTC
AACAACCCCATGGCCATCCAGGGCTCCGGAGTCATGATTGGAGGAACCAA
GTACATGATGTCGTGGCAGTCATACGTCGACCAGCAGCTCGTTGGAACCG
GAAACTGCGCCAAGGCCGCCATCATTGGCCATGACGGAAACACCTGGGCC
ATTTCCGCTGGCTTCAAGCTCTCCCCCCAGGAGGGTGCCGCTCTTGCCGC
TGGCTTCAACAACCCCATGGCCATCCAGGGCTCCGGAGTCATGATTGGAG
GAACCAAGTACATG
back to top