mRNA_M-pyrifera_M_contig110609.2226.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110609.2226.1
Unique NamemRNA_M-pyrifera_M_contig110609.2226.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110609.2226.1 vs. uniprot
Match: UPI000D64FBF5 (hypothetical protein n=1 Tax=Hyphobacterium indicum TaxID=2162714 RepID=UPI000D64FBF5)

HSP 1 Score: 54.7 bits (130), Expect = 4.140e-7
Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:   73 NGNA-QSIATACMDTTNMPDAICTCVGNRAVEDLDENAQLFLHALIVGDKGAADTLRPQLPADQLIAASMFMVSTPQDCAR 312
            +GNA      AC+  +N   ++CTC+  +A EDL +N++ FL A +  +  A   +R ++  +++  A+MFM +    CAR
Sbjct:   60 SGNAGDDFVAACLSASNQSVSMCTCLSEKADEDLSDNSREFLIATLNEESEAVMEMRTRMDMEEMATAAMFMANASTQCAR 140
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110609.2226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000D64FBF54.140e-732.10hypothetical protein n=1 Tax=Hyphobacterium indicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110609contigM-pyrifera_M_contig110609:141..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.8590693-CDS-M-pyrifera_M_contig110609:140..4551622815617.8590693-CDS-M-pyrifera_M_contig110609:140..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110609 141..455 -
1692277489.865854-CDS-M-pyrifera_M_contig110609:140..4551692277489.865854-CDS-M-pyrifera_M_contig110609:140..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110609 141..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110609.2226.1prot_M-pyrifera_M_contig110609.2226.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110609 141..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110609.2226.1

>prot_M-pyrifera_M_contig110609.2226.1 ID=prot_M-pyrifera_M_contig110609.2226.1|Name=mRNA_M-pyrifera_M_contig110609.2226.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MNLRIGLIAALVAGLGGPVYAQDGNGNAQSIATACMDTTNMPDAICTCVG
NRAVEDLDENAQLFLHALIVGDKGAADTLRPQLPADQLIAASMFMVSTPQ
DCAR*
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mRNA from alignment at M-pyrifera_M_contig110609:141..455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110609.2226.1 ID=mRNA_M-pyrifera_M_contig110609.2226.1|Name=mRNA_M-pyrifera_M_contig110609.2226.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig110609:141..455- (Macrocystis pyrifera P11B4 male)
ATGAATTTGAGAATTGGACTTATCGCTGCATTGGTCGCGGGTTTGGGTGG
CCCGGTGTATGCGCAAGATGGTAATGGGAATGCCCAGTCGATCGCAACGG
CGTGCATGGATACAACCAATATGCCCGACGCCATATGCACATGTGTGGGC
AATCGGGCGGTCGAGGATCTGGATGAAAACGCCCAGCTTTTCTTGCACGC
ATTGATCGTTGGCGACAAAGGTGCGGCGGATACATTGCGCCCGCAACTTC
CGGCTGATCAGTTGATTGCCGCCAGCATGTTTATGGTTTCGACTCCGCAG
GATTGTGCCCGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110609:141..455-

>mRNA_M-pyrifera_M_contig110609.2226.1 ID=mRNA_M-pyrifera_M_contig110609.2226.1|Name=mRNA_M-pyrifera_M_contig110609.2226.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig110609:141..455- (Macrocystis pyrifera P11B4 male)
ATGAATTTGAGAATTGGACTTATCGCTGCATTGGTCGCGGGTTTGGGTGG
CCCGGTGTATGCGCAAGATGGTAATGGGAATGCCCAGTCGATCGCAACGG
CGTGCATGGATACAACCAATATGCCCGACGCCATATGCACATGTGTGGGC
AATCGGGCGGTCGAGGATCTGGATGAAAACGCCCAGCTTTTCTTGCACGC
ATTGATCGTTGGCGACAAAGGTGCGGCGGATACATTGCGCCCGCAACTTC
CGGCTGATCAGTTGATTGCCGCCAGCATGTTTATGGTTTCGACTCCGCAG
GATTGTGCCCGTTGAATGAATTTGAGAATTGGACTTATCGCTGCATTGGT
CGCGGGTTTGGGTGGCCCGGTGTATGCGCAAGATGGTAATGGGAATGCCC
AGTCGATCGCAACGGCGTGCATGGATACAACCAATATGCCCGACGCCATA
TGCACATGTGTGGGCAATCGGGCGGTCGAGGATCTGGATGAAAACGCCCA
GCTTTTCTTGCACGCATTGATCGTTGGCGACAAAGGTGCGGCGGATACAT
TGCGCCCGCAACTTCCGGCTGATCAGTTGATTGCCGCCAGCATGTTTATG
GTTTCGACTCCGCAGGATTGTGCCCGTTGA
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